Wall clock time and date at job start Tue Mar 31 2020 16:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46500 * 120.00457 * 2 1 4 4 C 1.52999 * 109.46858 * 270.00137 * 3 2 1 5 5 H 1.08998 * 112.79167 * 284.18775 * 4 3 2 6 6 C 1.53515 * 113.47466 * 153.37683 * 4 3 2 7 7 C 1.53509 * 83.57837 * 219.20833 * 6 4 3 8 8 N 1.47483 * 87.93118 * 26.02651 * 7 6 4 9 9 C 1.46899 * 110.99885 * 221.29872 * 8 7 6 10 10 C 1.53005 * 109.47133 * 294.82153 * 9 8 7 11 11 C 1.53000 * 109.47131 * 182.85916 * 10 9 8 12 12 C 1.52998 * 109.46687 * 180.02562 * 11 10 9 13 13 C 1.53008 * 109.46849 * 179.97438 * 12 11 10 14 14 F 1.39899 * 109.46748 * 179.97438 * 13 12 11 15 15 C 1.34777 * 119.99654 * 180.02562 * 2 1 3 16 16 O 1.21279 * 120.00220 * 179.97438 * 15 2 1 17 17 C 1.50704 * 119.99817 * 359.97438 * 15 2 1 18 18 S 1.81004 * 109.46649 * 180.02562 * 17 15 2 19 19 C 1.76202 * 99.99760 * 180.02562 * 18 17 15 20 20 H 1.08007 * 119.99663 * 0.02562 * 19 18 17 21 21 C 1.38794 * 120.00226 * 179.97438 * 19 18 17 22 22 N 1.31630 * 120.00360 * 179.97438 * 21 19 18 23 23 Si 1.86806 * 119.99929 * 359.97438 * 21 19 18 24 24 H 1.48506 * 109.46931 * 89.99897 * 23 21 19 25 25 H 1.48493 * 109.46984 * 209.99735 * 23 21 19 26 26 H 1.48503 * 109.46930 * 330.00098 * 23 21 19 27 27 H 1.09000 * 109.47421 * 89.99855 * 1 2 3 28 28 H 1.09000 * 109.47310 * 210.00315 * 1 2 3 29 29 H 1.09007 * 109.46864 * 329.99714 * 1 2 3 30 30 H 1.08997 * 109.47229 * 150.00113 * 3 2 1 31 31 H 1.09003 * 109.46808 * 29.99791 * 3 2 1 32 32 H 1.08998 * 114.16895 * 105.56036 * 6 4 3 33 33 H 1.09000 * 114.17187 * 332.85745 * 6 4 3 34 34 H 1.08999 * 113.47929 * 271.26143 * 7 6 4 35 35 H 1.09002 * 113.47524 * 140.78782 * 7 6 4 36 36 H 1.09002 * 109.46725 * 174.82761 * 9 8 7 37 37 H 1.08991 * 109.47525 * 54.82522 * 9 8 7 38 38 H 1.09002 * 109.46947 * 62.85817 * 10 9 8 39 39 H 1.09005 * 109.47043 * 302.86207 * 10 9 8 40 40 H 1.09002 * 109.47285 * 60.00108 * 11 10 9 41 41 H 1.08992 * 109.47047 * 300.00092 * 11 10 9 42 42 H 1.09004 * 109.47550 * 299.99420 * 12 11 10 43 43 H 1.08993 * 109.47466 * 60.00036 * 12 11 10 44 44 H 1.08992 * 109.47115 * 300.00098 * 13 12 11 45 45 H 1.09005 * 109.46563 * 59.99935 * 13 12 11 46 46 H 1.08995 * 109.47637 * 300.00352 * 17 15 2 47 47 H 1.09000 * 109.46950 * 60.00676 * 17 15 2 48 48 H 0.96999 * 120.00621 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 -1.4425 5 1 3.2505 1.1439 -1.9227 6 6 2.6016 3.2301 -1.5995 7 6 1.7996 3.0021 -2.8884 8 7 1.2250 1.8005 -2.2550 9 6 1.1442 0.6888 -3.2118 10 6 0.1560 1.0443 -4.3245 11 6 0.0180 -0.1411 -5.2819 12 6 -0.9697 0.2147 -6.3949 13 6 -1.1073 -0.9705 -7.3527 14 9 -2.0109 -0.6453 -8.3701 15 6 2.1388 -1.1672 -0.0005 16 8 3.3516 -1.1674 -0.0010 17 6 1.3852 -2.4723 -0.0005 18 16 2.5614 -3.8481 -0.0005 19 6 1.4412 -5.2082 -0.0013 20 1 0.3759 -5.0304 -0.0020 21 6 1.9278 -6.5081 -0.0020 22 7 1.0910 -7.5242 -0.0021 23 14 3.7704 -6.8156 -0.0030 24 1 4.2592 -6.8977 1.3969 25 1 4.0587 -8.0927 -0.7036 26 1 4.4579 -5.7008 -0.7028 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 3.1500 1.1383 0.5138 31 1 1.6085 2.0284 0.5138 32 1 3.6261 3.5634 -1.7644 33 1 2.0743 3.8108 -0.8426 34 1 2.4232 2.7804 -3.7545 35 1 1.0644 3.7823 -3.0861 36 1 0.8037 -0.2096 -2.6969 37 1 2.1285 0.5089 -3.6438 38 1 0.5223 1.9128 -4.8719 39 1 -0.8160 1.2737 -3.8876 40 1 -0.3484 -1.0096 -4.7345 41 1 0.9898 -0.3704 -5.7187 42 1 -1.9418 0.4443 -5.9584 43 1 -0.6030 1.0830 -6.9422 44 1 -0.1353 -1.1997 -7.7892 45 1 -1.4739 -1.8391 -6.8056 46 1 0.7588 -2.5303 0.8896 47 1 0.7583 -2.5298 -0.8903 48 1 1.4311 -8.4326 -0.0023 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230814349.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:13 Heat of formation + Delta-G solvation = -88.860594 kcal Electronic energy + Delta-G solvation = -26702.218156 eV Core-core repulsion = 22832.465268 eV Total energy + Delta-G solvation = -3869.752888 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -48.58994 -41.61434 -40.33495 -36.87430 -36.37274 -34.68349 -33.10009 -31.69015 -29.43422 -28.94550 -27.86842 -27.24515 -25.45040 -24.34755 -22.62813 -21.92378 -20.93679 -20.45383 -19.51418 -18.06627 -17.52235 -17.34195 -17.20251 -17.11076 -16.93489 -16.51291 -16.20317 -16.05025 -15.77872 -15.60932 -15.03379 -14.88574 -14.56991 -14.36319 -14.20874 -13.78524 -13.58350 -13.41013 -13.36226 -13.21118 -13.03816 -12.96254 -12.79109 -12.71646 -12.43026 -12.34229 -12.09341 -11.95147 -11.88837 -11.81875 -11.51959 -11.39595 -11.35511 -11.18366 -10.89936 -10.54023 -10.00307 -9.51654 -9.01590 -8.52610 -6.23678 0.97095 1.29866 1.44812 1.53111 1.54917 2.11894 2.23788 2.67935 2.85696 2.98819 3.46494 3.57552 3.64944 3.81247 3.87359 3.90622 4.04522 4.12314 4.13664 4.20281 4.26940 4.31200 4.35741 4.39359 4.44884 4.46083 4.54140 4.60433 4.69954 4.79000 4.80494 4.82888 4.84279 4.89800 4.92064 5.00385 5.03407 5.15383 5.23835 5.32113 5.34693 5.44798 5.58479 5.69700 6.08552 6.10075 6.30918 6.92649 7.11836 8.59858 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.007704 B = 0.003523 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3633.719609 B = 7946.354800 C =10782.985775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.598 5.598 3 C 0.135 3.865 4 C 0.006 3.994 5 H 0.053 0.947 6 C -0.123 4.123 7 C 0.000 4.000 8 N -0.459 5.459 9 C 0.024 3.976 10 C -0.101 4.101 11 C -0.117 4.117 12 C -0.141 4.141 13 C 0.051 3.949 14 F -0.238 7.238 15 C 0.530 3.470 16 O -0.564 6.564 17 C -0.104 4.104 18 S -0.176 6.176 19 C -0.528 4.528 20 H 0.061 0.939 21 C 0.048 3.952 22 N -0.916 5.916 23 Si 0.913 3.087 24 H -0.262 1.262 25 H -0.258 1.258 26 H -0.238 1.238 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.097 0.903 30 H 0.068 0.932 31 H 0.111 0.889 32 H 0.084 0.916 33 H 0.111 0.889 34 H 0.065 0.935 35 H 0.099 0.901 36 H 0.059 0.941 37 H 0.024 0.976 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.085 0.915 45 H 0.081 0.919 46 H 0.108 0.892 47 H 0.105 0.895 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.962 25.227 -8.309 26.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.330 5.330 3 C 0.012 3.988 4 C -0.104 4.104 5 H 0.071 0.929 6 C -0.161 4.161 7 C -0.129 4.129 8 N -0.182 5.182 9 C -0.105 4.105 10 C -0.139 4.139 11 C -0.155 4.155 12 C -0.179 4.179 13 C -0.004 4.004 14 F -0.219 7.219 15 C 0.317 3.683 16 O -0.443 6.443 17 C -0.255 4.255 18 S 0.051 5.949 19 C -0.675 4.675 20 H 0.079 0.921 21 C -0.157 4.157 22 N -0.554 5.554 23 Si 0.734 3.266 24 H -0.187 1.187 25 H -0.182 1.182 26 H -0.162 1.162 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.115 0.885 30 H 0.087 0.913 31 H 0.129 0.871 32 H 0.102 0.898 33 H 0.129 0.871 34 H 0.083 0.917 35 H 0.117 0.883 36 H 0.077 0.923 37 H 0.043 0.957 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.104 0.896 45 H 0.099 0.901 46 H 0.126 0.874 47 H 0.123 0.877 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.953 25.047 -8.030 26.375 hybrid contribution -0.220 -1.276 -0.521 1.396 sum -2.173 23.770 -8.551 25.355 Atomic orbital electron populations 1.21990 0.77182 1.03923 1.02902 1.47693 1.08290 1.04597 1.72445 1.21595 0.97503 0.84210 0.95503 1.23810 0.92494 0.98294 0.95838 0.92930 1.23193 1.01571 0.93052 0.98328 1.23714 0.98052 0.94562 0.96569 1.68910 1.31150 1.03512 1.14578 1.22612 0.98194 0.95526 0.94152 1.21417 0.99537 0.98007 0.94912 1.21436 0.99335 0.98612 0.96158 1.22056 1.01010 0.98214 0.96647 1.22237 0.92238 0.99197 0.86688 1.92723 1.71165 1.94585 1.63447 1.19986 0.87243 0.85353 0.75688 1.90664 1.15256 1.87452 1.50965 1.23264 1.01694 0.93950 1.06601 1.84688 1.13809 0.98900 1.97546 1.22434 0.94313 0.92489 1.58296 0.92060 1.25525 1.02621 0.94724 0.92856 1.70010 1.36755 0.99535 1.49129 0.85896 0.80337 0.80077 0.80240 1.18697 1.18247 1.16172 0.91749 0.91502 0.88456 0.91330 0.87110 0.89753 0.87086 0.91712 0.88300 0.92277 0.95749 0.91129 0.90860 0.92005 0.91746 0.90680 0.90410 0.89649 0.90108 0.87381 0.87693 0.91345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.55 9.79 127.77 1.25 2.80 16 2 N -0.60 -15.01 2.78 -846.74 -2.35 -17.36 16 3 C 0.13 2.78 5.60 86.38 0.48 3.26 16 4 C 0.01 0.12 3.37 42.19 0.14 0.27 16 5 H 0.05 1.33 7.62 -2.39 -0.02 1.31 16 6 C -0.12 -1.48 8.00 30.94 0.25 -1.23 16 7 C 0.00 0.00 6.62 83.58 0.55 0.55 16 8 N -0.46 -7.80 5.50 -902.08 -4.97 -12.77 16 9 C 0.02 0.47 4.71 86.31 0.41 0.88 16 10 C -0.10 -1.51 5.15 30.60 0.16 -1.35 16 11 C -0.12 -1.77 5.21 30.59 0.16 -1.61 16 12 C -0.14 -1.94 5.67 30.60 0.17 -1.76 16 13 C 0.05 0.78 7.55 71.98 0.54 1.32 16 14 F -0.24 -4.98 17.36 44.97 0.78 -4.20 16 15 C 0.53 18.74 7.69 87.66 0.67 19.41 16 16 O -0.56 -24.31 15.44 -3.03 -0.05 -24.35 16 17 C -0.10 -4.04 4.71 71.24 0.34 -3.70 16 18 S -0.18 -8.97 18.55 -56.49 -1.05 -10.02 16 19 C -0.53 -30.79 10.04 67.95 0.68 -30.10 16 20 H 0.06 3.77 8.03 -2.91 -0.02 3.75 16 21 C 0.05 2.83 5.50 84.86 0.47 3.30 16 22 N -0.92 -55.71 13.97 21.65 0.30 -55.41 16 23 Si 0.91 45.01 27.74 68.60 1.90 46.91 16 24 H -0.26 -12.64 7.11 99.48 0.71 -11.93 16 25 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 26 H -0.24 -11.73 6.74 99.48 0.67 -11.06 16 27 H 0.06 1.20 6.46 -2.39 -0.02 1.19 16 28 H 0.07 1.31 6.44 -2.39 -0.02 1.30 16 29 H 0.10 1.32 7.89 -2.38 -0.02 1.30 16 30 H 0.07 1.68 7.42 -2.39 -0.02 1.66 16 31 H 0.11 1.61 7.63 -2.39 -0.02 1.59 16 32 H 0.08 0.90 8.14 -2.39 -0.02 0.89 16 33 H 0.11 1.01 7.94 -2.39 -0.02 0.99 16 34 H 0.06 0.86 7.84 -2.39 -0.02 0.84 16 35 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.06 1.41 6.91 -2.39 -0.02 1.39 16 37 H 0.02 0.55 7.56 -2.39 -0.02 0.53 16 38 H 0.07 0.93 7.44 -2.39 -0.02 0.91 16 39 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 40 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 43 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 46 H 0.11 3.91 7.40 -2.40 -0.02 3.89 16 47 H 0.10 3.82 8.11 -2.39 -0.02 3.80 16 48 H 0.28 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -72.70 398.18 1.73 -70.97 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 0.88 Total: 14.20 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: 6.28 Total: -7.98 kcal Atomic # 7 Polarization: -78.52 SS G_CDS: -7.02 Total: -85.54 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: -0.05 Total: -24.35 kcal Atomic # 9 Polarization: -4.98 SS G_CDS: 0.78 Total: -4.20 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.90 Total: 46.91 kcal Atomic # 16 Polarization: -8.97 SS G_CDS: -1.05 Total: -10.02 kcal Total: -72.70 1.73 -70.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230814349.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.892 kcal (2) G-P(sol) polarization free energy of solvation -72.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds