Wall clock time and date at job start Tue Mar 31 2020 16:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46505 * 120.00091 * 2 1 4 4 C 1.52996 * 109.47145 * 275.40553 * 3 2 1 5 5 H 1.08997 * 112.73830 * 44.56568 * 4 3 2 6 6 C 1.53497 * 113.52093 * 273.77074 * 4 3 2 7 7 C 1.53751 * 83.25933 * 218.97660 * 6 4 3 8 8 N 1.47066 * 87.88863 * 26.23910 * 7 6 4 9 9 C 1.36933 * 136.05724 * 152.96572 * 8 7 6 10 10 H 1.08000 * 120.00482 * 174.82795 * 9 8 7 11 11 C 1.38815 * 119.99927 * 355.10102 * 9 8 7 12 12 N 1.31621 * 119.99929 * 359.72435 * 11 9 8 13 13 Si 1.86804 * 120.00076 * 179.72926 * 11 9 8 14 14 H 1.48501 * 109.47197 * 59.99729 * 13 11 9 15 15 H 1.48500 * 109.46911 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.46692 * 299.99897 * 13 11 9 17 17 C 1.34777 * 120.00434 * 179.97438 * 2 1 3 18 18 O 1.21277 * 120.00210 * 179.97438 * 17 2 1 19 19 C 1.50699 * 119.99797 * 0.02562 * 17 2 1 20 20 C 1.50697 * 109.47185 * 179.97438 * 19 17 2 21 21 C 1.32572 * 120.00072 * 127.38745 * 20 19 17 22 22 C 1.47813 * 119.99711 * 8.15980 * 21 20 19 23 23 C 1.39565 * 120.12862 * 218.09901 * 22 21 20 24 24 C 1.37962 * 119.90389 * 179.69819 * 23 22 21 25 25 C 1.38325 * 120.17318 * 0.58498 * 24 23 22 26 26 C 1.38540 * 120.26115 * 359.71116 * 25 24 23 27 27 F 1.35093 * 119.95953 * 180.02562 * 26 25 24 28 28 C 1.38231 * 120.08740 * 359.97438 * 26 25 24 29 29 H 1.09003 * 109.47488 * 85.76193 * 1 2 3 30 30 H 1.08999 * 109.47318 * 205.75911 * 1 2 3 31 31 H 1.09004 * 109.47204 * 325.76146 * 1 2 3 32 32 H 1.09001 * 109.47067 * 155.40238 * 3 2 1 33 33 H 1.09003 * 109.46833 * 35.40632 * 3 2 1 34 34 H 1.08996 * 114.20982 * 332.73562 * 6 4 3 35 35 H 1.09001 * 114.20088 * 105.35963 * 6 4 3 36 36 H 1.09002 * 113.46530 * 271.50198 * 7 6 4 37 37 H 1.09002 * 113.55452 * 140.99010 * 7 6 4 38 38 H 0.97002 * 120.00101 * 179.97438 * 12 11 9 39 39 H 1.09003 * 109.46964 * 300.00332 * 19 17 2 40 40 H 1.09009 * 109.47310 * 59.99468 * 19 17 2 41 41 H 1.07992 * 120.00159 * 307.37970 * 20 19 17 42 42 H 1.07991 * 120.00054 * 188.16246 * 21 20 19 43 43 H 1.08001 * 120.04439 * 359.97438 * 23 22 21 44 44 H 1.08003 * 119.91263 * 180.27934 * 24 23 22 45 45 H 1.08006 * 119.86974 * 179.74339 * 25 24 23 46 46 H 1.08002 * 120.08571 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3348 1.7784 -1.4360 5 1 1.4073 1.6963 -2.0027 6 6 3.5544 1.2092 -2.1740 7 6 3.6490 2.6349 -2.7419 8 7 2.9627 3.1050 -1.5292 9 6 2.9216 4.2681 -0.8077 10 1 2.2433 4.3619 0.0275 11 6 3.7477 5.3288 -1.1533 12 7 4.5744 5.2146 -2.1711 13 14 3.6863 6.9182 -0.1737 14 1 4.0331 6.6402 1.2432 15 1 4.6592 7.8867 -0.7402 16 1 2.3180 7.4911 -0.2452 17 6 2.1389 -1.1672 0.0005 18 8 3.3517 -1.1671 0.0001 19 6 1.3855 -2.4723 0.0005 20 6 2.3648 -3.6177 0.0005 21 6 2.2657 -4.5745 0.9127 22 6 1.0952 -4.6176 1.8143 23 6 1.2540 -4.9843 3.1515 24 6 0.1593 -5.0170 3.9905 25 6 -1.0970 -4.6990 3.5069 26 6 -1.2637 -4.3400 2.1792 27 9 -2.4934 -4.0301 1.7134 28 6 -0.1734 -4.2974 1.3307 29 1 -0.3634 0.0759 -1.0249 30 1 -0.3634 -0.9255 0.4466 31 1 -0.3634 0.8496 0.5782 32 1 3.1884 1.1162 0.4278 33 1 1.6537 2.0022 0.5954 34 1 4.3811 0.9288 -1.5213 35 1 3.3129 0.4470 -2.9149 36 1 3.0680 2.7786 -3.6529 37 1 4.6718 3.0011 -2.8315 38 1 5.1514 5.9559 -2.4129 39 1 0.7584 -2.5298 0.8903 40 1 0.7590 -2.5302 -0.8897 41 1 3.1472 -3.6591 -0.7426 42 1 3.0401 -5.3224 0.9971 43 1 2.2333 -5.2378 3.5301 44 1 0.2828 -5.2964 5.0265 45 1 -1.9513 -4.7302 4.1670 46 1 -0.3033 -4.0172 0.2958 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235489263.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:45:14 Heat of formation + Delta-G solvation = 30.608519 kcal Electronic energy + Delta-G solvation = -27915.869959 eV Core-core repulsion = 23915.853689 eV Total energy + Delta-G solvation = -4000.016270 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 2.85 seconds Orbital eigenvalues (eV) -49.20730 -40.11262 -39.33677 -37.88355 -35.43675 -35.10591 -32.16787 -31.09720 -30.83506 -29.08700 -27.85048 -27.52034 -26.06377 -23.49063 -23.32155 -22.89488 -22.11477 -19.86927 -19.15639 -18.97131 -17.32213 -17.12526 -16.65851 -16.60677 -16.27034 -16.03684 -15.85672 -15.71409 -14.87323 -14.76125 -14.42316 -13.92984 -13.86081 -13.62231 -13.38764 -13.29061 -12.89001 -12.69802 -12.60677 -12.35743 -12.20601 -12.02613 -11.93558 -11.78976 -11.44974 -11.11973 -11.01941 -10.79971 -10.70176 -10.39198 -10.13156 -9.81671 -9.73262 -9.67847 -9.40110 -9.13383 -8.73953 -8.60102 -8.24716 -6.82312 -5.71629 -3.05609 0.54311 0.81194 1.99213 2.81976 3.20507 3.32694 3.41219 3.45071 3.46619 3.86806 4.30643 4.40800 4.47870 4.59722 4.64204 4.73030 4.77450 4.94614 5.01274 5.17795 5.25118 5.31133 5.40243 5.43525 5.50978 5.52877 5.65595 5.67137 5.70724 5.73673 5.88948 5.92672 5.99847 6.06171 6.13926 6.28346 6.42130 6.45911 6.53179 6.57009 6.71011 6.82274 6.86546 7.30613 7.51492 7.62837 7.65677 8.04318 8.39120 9.06927 9.74517 10.70227 11.44816 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019027 B = 0.002411 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.247132 B =11610.475880 C =12085.554562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.611 5.611 3 C 0.115 3.885 4 C 0.131 3.869 5 H 0.039 0.961 6 C -0.155 4.155 7 C 0.147 3.853 8 N -0.601 5.601 9 C -0.219 4.219 10 H 0.078 0.922 11 C -0.007 4.007 12 N -0.918 5.918 13 Si 0.912 3.088 14 H -0.284 1.284 15 H -0.290 1.290 16 H -0.286 1.286 17 C 0.514 3.486 18 O -0.531 6.531 19 C -0.132 4.132 20 C -0.092 4.092 21 C -0.142 4.142 22 C -0.019 4.019 23 C -0.121 4.121 24 C -0.089 4.089 25 C -0.159 4.159 26 C 0.099 3.901 27 F -0.139 7.139 28 C -0.155 4.155 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.047 0.953 36 H 0.019 0.981 37 H 0.076 0.924 38 H 0.254 0.746 39 H 0.106 0.894 40 H 0.103 0.897 41 H 0.129 0.871 42 H 0.131 0.869 43 H 0.132 0.868 44 H 0.133 0.867 45 H 0.134 0.866 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.393 -23.755 8.599 27.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.345 5.345 3 C -0.008 4.008 4 C 0.023 3.977 5 H 0.057 0.943 6 C -0.194 4.194 7 C 0.021 3.979 8 N -0.327 5.327 9 C -0.346 4.346 10 H 0.096 0.904 11 C -0.204 4.204 12 N -0.565 5.565 13 Si 0.742 3.258 14 H -0.210 1.210 15 H -0.216 1.216 16 H -0.213 1.213 17 C 0.301 3.699 18 O -0.407 6.407 19 C -0.171 4.171 20 C -0.111 4.111 21 C -0.160 4.160 22 C -0.019 4.019 23 C -0.140 4.140 24 C -0.107 4.107 25 C -0.178 4.178 26 C 0.080 3.920 27 F -0.118 7.118 28 C -0.174 4.174 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.107 0.893 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.065 0.935 36 H 0.037 0.963 37 H 0.094 0.906 38 H 0.064 0.936 39 H 0.124 0.876 40 H 0.121 0.879 41 H 0.147 0.853 42 H 0.148 0.852 43 H 0.150 0.850 44 H 0.151 0.849 45 H 0.152 0.848 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -10.689 -23.345 8.669 27.100 hybrid contribution -0.575 1.122 0.298 1.296 sum -11.265 -22.222 8.968 26.479 Atomic orbital electron populations 1.21799 0.80082 1.02704 1.02057 1.47884 1.06723 1.06647 1.73217 1.21926 0.97571 0.82219 0.99107 1.22419 0.95142 0.86994 0.93133 0.94334 1.23661 0.98736 0.97265 0.99692 1.22173 0.98865 0.88037 0.88822 1.45597 1.51571 1.08449 1.27056 1.18825 1.17926 0.89164 1.08689 0.90432 1.24793 0.98682 0.98380 0.98503 1.69825 1.26352 1.31580 1.28704 0.86215 0.77190 0.83077 0.79351 1.21034 1.21552 1.21252 1.20368 0.88070 0.84877 0.76590 1.90711 1.13717 1.87155 1.49143 1.21296 0.98928 0.92012 1.04879 1.23013 0.98218 0.92639 0.97192 1.21578 0.96926 1.01365 0.96159 1.18944 0.92588 0.96653 0.93725 1.21380 0.99406 1.00409 0.92759 1.20975 0.91530 0.98040 1.00132 1.21207 0.99203 1.03242 0.94164 1.17605 0.80004 1.01363 0.93043 1.91515 1.40553 1.90589 1.89120 1.21445 0.91353 1.03774 1.00807 0.92413 0.91470 0.91033 0.89309 0.91142 0.89995 0.93459 0.96284 0.90615 0.93631 0.87599 0.87865 0.85317 0.85168 0.85032 0.84897 0.84822 0.84182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.83 10.35 59.84 0.62 1.44 16 2 N -0.61 -9.02 2.87 -181.57 -0.52 -9.54 16 3 C 0.11 2.15 5.45 -4.04 -0.02 2.12 16 4 C 0.13 2.77 4.30 -72.40 -0.31 2.46 16 5 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 6 C -0.16 -3.29 8.03 -26.08 -0.21 -3.50 16 7 C 0.15 3.65 7.53 -8.37 -0.06 3.59 16 8 N -0.60 -15.76 3.64 -176.84 -0.64 -16.40 16 9 C -0.22 -6.17 10.55 -15.06 -0.16 -6.33 16 10 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 11 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 12 N -0.92 -27.85 11.42 55.49 0.63 -27.21 16 13 Si 0.91 22.37 29.55 -169.99 -5.02 17.34 16 14 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 15 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 16 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 17 C 0.51 7.62 7.67 -10.99 -0.08 7.53 16 18 O -0.53 -9.92 15.53 5.56 0.09 -9.84 16 19 C -0.13 -1.35 2.95 -29.04 -0.09 -1.44 16 20 C -0.09 -0.92 8.70 -36.22 -0.32 -1.23 16 21 C -0.14 -1.23 9.79 -37.57 -0.37 -1.60 16 22 C -0.02 -0.16 5.14 -105.02 -0.54 -0.70 16 23 C -0.12 -0.92 9.78 -39.19 -0.38 -1.30 16 24 C -0.09 -0.60 10.03 -39.65 -0.40 -1.00 16 25 C -0.16 -1.20 10.02 -39.44 -0.40 -1.59 16 26 C 0.10 0.87 7.29 -39.47 -0.29 0.58 16 27 F -0.14 -1.34 17.26 2.25 0.04 -1.31 16 28 C -0.16 -1.32 7.30 -39.12 -0.29 -1.60 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.55 6.29 -51.93 -0.33 0.23 16 31 H 0.07 0.74 8.00 -51.93 -0.42 0.33 16 32 H 0.09 1.88 7.01 -51.93 -0.36 1.52 16 33 H 0.07 1.31 8.00 -51.93 -0.42 0.89 16 34 H 0.08 1.84 7.95 -51.93 -0.41 1.43 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.08 2.09 6.92 -51.93 -0.36 1.73 16 38 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.11 1.01 4.13 -51.93 -0.21 0.79 16 40 H 0.10 0.85 7.96 -51.92 -0.41 0.43 16 41 H 0.13 1.32 8.05 -52.49 -0.42 0.90 16 42 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 43 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 44 H 0.13 0.58 8.06 -52.48 -0.42 0.15 16 45 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 46 H 0.14 1.04 6.37 -52.49 -0.33 0.71 16 LS Contribution 383.60 15.07 5.78 5.78 Total: -1.00 -33.89 383.60 -9.64 -43.53 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -6.61 Total: 0.48 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -3.38 Total: -2.84 kcal Atomic # 7 Polarization: -52.63 SS G_CDS: -0.53 Total: -53.16 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.09 Total: -9.84 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.31 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.89 -9.64 -43.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235489263.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.141 kcal (2) G-P(sol) polarization free energy of solvation -33.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.85 seconds