Wall clock time and date at job start Tue Mar 31 2020 16:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46505 * 120.00091 * 2 1 4 4 C 1.52996 * 109.47145 * 275.40553 * 3 2 1 5 5 H 1.08997 * 112.73830 * 44.56568 * 4 3 2 6 6 C 1.53497 * 113.52093 * 273.77074 * 4 3 2 7 7 C 1.53751 * 83.25933 * 218.97660 * 6 4 3 8 8 N 1.47066 * 87.88863 * 26.23910 * 7 6 4 9 9 C 1.36933 * 136.05724 * 152.96572 * 8 7 6 10 10 H 1.08000 * 120.00482 * 174.82795 * 9 8 7 11 11 C 1.38815 * 119.99927 * 355.10102 * 9 8 7 12 12 N 1.31621 * 119.99929 * 359.72435 * 11 9 8 13 13 Si 1.86804 * 120.00076 * 179.72926 * 11 9 8 14 14 H 1.48501 * 109.47197 * 59.99729 * 13 11 9 15 15 H 1.48500 * 109.46911 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.46692 * 299.99897 * 13 11 9 17 17 C 1.34777 * 120.00434 * 179.97438 * 2 1 3 18 18 O 1.21277 * 120.00210 * 179.97438 * 17 2 1 19 19 C 1.50699 * 119.99797 * 0.02562 * 17 2 1 20 20 C 1.50697 * 109.47185 * 179.97438 * 19 17 2 21 21 C 1.32572 * 120.00072 * 127.38745 * 20 19 17 22 22 C 1.47813 * 119.99711 * 8.15980 * 21 20 19 23 23 C 1.39565 * 120.12862 * 218.09901 * 22 21 20 24 24 C 1.37962 * 119.90389 * 179.69819 * 23 22 21 25 25 C 1.38325 * 120.17318 * 0.58498 * 24 23 22 26 26 C 1.38540 * 120.26115 * 359.71116 * 25 24 23 27 27 F 1.35093 * 119.95953 * 180.02562 * 26 25 24 28 28 C 1.38231 * 120.08740 * 359.97438 * 26 25 24 29 29 H 1.09003 * 109.47488 * 85.76193 * 1 2 3 30 30 H 1.08999 * 109.47318 * 205.75911 * 1 2 3 31 31 H 1.09004 * 109.47204 * 325.76146 * 1 2 3 32 32 H 1.09001 * 109.47067 * 155.40238 * 3 2 1 33 33 H 1.09003 * 109.46833 * 35.40632 * 3 2 1 34 34 H 1.08996 * 114.20982 * 332.73562 * 6 4 3 35 35 H 1.09001 * 114.20088 * 105.35963 * 6 4 3 36 36 H 1.09002 * 113.46530 * 271.50198 * 7 6 4 37 37 H 1.09002 * 113.55452 * 140.99010 * 7 6 4 38 38 H 0.97002 * 120.00101 * 179.97438 * 12 11 9 39 39 H 1.09003 * 109.46964 * 300.00332 * 19 17 2 40 40 H 1.09009 * 109.47310 * 59.99468 * 19 17 2 41 41 H 1.07992 * 120.00159 * 307.37970 * 20 19 17 42 42 H 1.07991 * 120.00054 * 188.16246 * 21 20 19 43 43 H 1.08001 * 120.04439 * 359.97438 * 23 22 21 44 44 H 1.08003 * 119.91263 * 180.27934 * 24 23 22 45 45 H 1.08006 * 119.86974 * 179.74339 * 25 24 23 46 46 H 1.08002 * 120.08571 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3348 1.7784 -1.4360 5 1 1.4073 1.6963 -2.0027 6 6 3.5544 1.2092 -2.1740 7 6 3.6490 2.6349 -2.7419 8 7 2.9627 3.1050 -1.5292 9 6 2.9216 4.2681 -0.8077 10 1 2.2433 4.3619 0.0275 11 6 3.7477 5.3288 -1.1533 12 7 4.5744 5.2146 -2.1711 13 14 3.6863 6.9182 -0.1737 14 1 4.0331 6.6402 1.2432 15 1 4.6592 7.8867 -0.7402 16 1 2.3180 7.4911 -0.2452 17 6 2.1389 -1.1672 0.0005 18 8 3.3517 -1.1671 0.0001 19 6 1.3855 -2.4723 0.0005 20 6 2.3648 -3.6177 0.0005 21 6 2.2657 -4.5745 0.9127 22 6 1.0952 -4.6176 1.8143 23 6 1.2540 -4.9843 3.1515 24 6 0.1593 -5.0170 3.9905 25 6 -1.0970 -4.6990 3.5069 26 6 -1.2637 -4.3400 2.1792 27 9 -2.4934 -4.0301 1.7134 28 6 -0.1734 -4.2974 1.3307 29 1 -0.3634 0.0759 -1.0249 30 1 -0.3634 -0.9255 0.4466 31 1 -0.3634 0.8496 0.5782 32 1 3.1884 1.1162 0.4278 33 1 1.6537 2.0022 0.5954 34 1 4.3811 0.9288 -1.5213 35 1 3.3129 0.4470 -2.9149 36 1 3.0680 2.7786 -3.6529 37 1 4.6718 3.0011 -2.8315 38 1 5.1514 5.9559 -2.4129 39 1 0.7584 -2.5298 0.8903 40 1 0.7590 -2.5302 -0.8897 41 1 3.1472 -3.6591 -0.7426 42 1 3.0401 -5.3224 0.9971 43 1 2.2333 -5.2378 3.5301 44 1 0.2828 -5.2964 5.0265 45 1 -1.9513 -4.7302 4.1670 46 1 -0.3033 -4.0172 0.2958 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235489263.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:45:11 Heat of formation + Delta-G solvation = 12.118090 kcal Electronic energy + Delta-G solvation = -27916.671764 eV Core-core repulsion = 23915.853689 eV Total energy + Delta-G solvation = -4000.818075 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -49.85925 -41.20537 -40.17178 -39.54554 -36.49991 -36.02673 -34.27307 -31.83185 -31.46957 -30.22464 -29.90622 -28.46746 -27.17320 -25.40757 -24.35968 -23.49999 -23.47377 -21.06922 -20.69042 -19.96468 -18.77993 -18.06825 -17.93737 -17.30633 -17.13172 -17.09518 -16.87407 -16.58372 -16.44579 -15.95639 -15.74086 -15.27716 -15.04012 -14.72806 -14.28641 -14.20707 -14.01604 -13.87097 -13.75339 -13.46565 -13.31805 -13.13131 -12.96671 -12.90211 -12.81321 -12.62547 -12.54562 -12.42128 -12.26211 -11.80009 -11.73758 -11.68581 -11.22527 -10.91107 -10.81952 -10.66282 -9.75015 -9.59286 -9.24207 -8.90973 -7.88736 -5.24316 -0.06178 0.24091 1.30690 1.44426 1.48853 1.54614 1.69043 2.10144 2.48888 2.70849 3.27634 3.30667 3.42911 3.67683 3.70416 3.85819 3.89567 3.98956 4.11805 4.19762 4.24337 4.25154 4.33952 4.41071 4.43231 4.45454 4.53783 4.66945 4.76034 4.82063 4.84640 4.90044 4.93368 5.00945 5.06971 5.12002 5.16670 5.22184 5.33364 5.40723 5.47726 5.52029 5.61388 5.73747 5.76305 5.94587 5.96074 6.48011 6.89518 7.24450 7.60513 8.61891 9.28210 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019027 B = 0.002411 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.247132 B =11610.475880 C =12085.554562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.611 5.611 3 C 0.129 3.871 4 C 0.139 3.861 5 H 0.056 0.944 6 C -0.131 4.131 7 C 0.142 3.858 8 N -0.629 5.629 9 C -0.225 4.225 10 H 0.088 0.912 11 C -0.071 4.071 12 N -0.956 5.956 13 Si 0.981 3.019 14 H -0.275 1.275 15 H -0.296 1.296 16 H -0.274 1.274 17 C 0.507 3.493 18 O -0.577 6.577 19 C -0.117 4.117 20 C -0.117 4.117 21 C -0.126 4.126 22 C -0.037 4.037 23 C -0.125 4.125 24 C -0.088 4.088 25 C -0.161 4.161 26 C 0.081 3.919 27 F -0.148 7.148 28 C -0.159 4.159 29 H 0.069 0.931 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.021 0.979 37 H 0.040 0.960 38 H 0.248 0.752 39 H 0.118 0.882 40 H 0.128 0.872 41 H 0.120 0.880 42 H 0.145 0.855 43 H 0.146 0.854 44 H 0.159 0.841 45 H 0.149 0.851 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.549 -25.327 10.163 30.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.344 5.344 3 C 0.005 3.995 4 C 0.032 3.968 5 H 0.074 0.926 6 C -0.169 4.169 7 C 0.016 3.984 8 N -0.356 5.356 9 C -0.353 4.353 10 H 0.106 0.894 11 C -0.264 4.264 12 N -0.604 5.604 13 Si 0.809 3.191 14 H -0.201 1.201 15 H -0.222 1.222 16 H -0.200 1.200 17 C 0.297 3.703 18 O -0.456 6.456 19 C -0.155 4.155 20 C -0.136 4.136 21 C -0.144 4.144 22 C -0.037 4.037 23 C -0.143 4.143 24 C -0.106 4.106 25 C -0.180 4.180 26 C 0.062 3.938 27 F -0.126 7.126 28 C -0.177 4.177 29 H 0.088 0.912 30 H 0.114 0.886 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.038 0.962 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.136 0.864 40 H 0.146 0.854 41 H 0.138 0.862 42 H 0.162 0.838 43 H 0.164 0.836 44 H 0.176 0.824 45 H 0.167 0.833 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -12.909 -24.960 10.249 29.911 hybrid contribution 0.058 1.482 -0.141 1.490 sum -12.851 -23.478 10.107 28.610 Atomic orbital electron populations 1.22077 0.77228 1.04512 1.03287 1.47929 1.08345 1.05160 1.72967 1.21422 0.96788 0.84264 0.97032 1.22499 0.95214 0.84283 0.94835 0.92632 1.23388 0.98300 0.95755 0.99493 1.22143 0.96896 0.90310 0.89040 1.45925 1.52551 1.09673 1.27417 1.19278 1.17397 0.89844 1.08789 0.89389 1.25702 0.98815 1.01964 0.99888 1.70037 1.27530 1.32207 1.30673 0.85117 0.77319 0.78703 0.77989 1.20113 1.22241 1.19997 1.21234 0.87822 0.86096 0.75173 1.90693 1.15958 1.87855 1.51092 1.21271 0.98639 0.89116 1.06511 1.22957 0.98809 0.93487 0.98315 1.21756 0.96902 1.00871 0.94854 1.19049 0.92527 0.97769 0.94328 1.21660 1.00476 0.99683 0.92516 1.21291 0.90878 0.97160 1.01294 1.21495 1.00179 1.02348 0.93951 1.17815 0.79819 1.02429 0.93775 1.91492 1.41037 1.90813 1.89292 1.21542 0.91278 1.03678 1.01246 0.91201 0.88577 0.90655 0.92387 0.91041 0.91743 0.90589 0.96175 0.94145 0.94362 0.86437 0.85394 0.86219 0.83780 0.83622 0.82354 0.83318 0.83412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.30 10.35 127.77 1.32 2.62 16 2 N -0.61 -17.04 2.87 -846.76 -2.43 -19.47 16 3 C 0.13 4.79 5.45 86.38 0.47 5.26 16 4 C 0.14 5.78 4.30 41.79 0.18 5.96 16 5 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 6 C -0.13 -5.57 8.03 31.01 0.25 -5.32 16 7 C 0.14 7.26 7.53 83.27 0.63 7.88 16 8 N -0.63 -33.42 3.64 -713.39 -2.60 -36.02 16 9 C -0.23 -12.80 10.55 84.03 0.89 -11.92 16 10 H 0.09 4.67 7.83 -2.91 -0.02 4.65 16 11 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 12 N -0.96 -59.80 11.42 21.65 0.25 -59.56 16 13 Si 0.98 46.51 29.55 68.60 2.03 48.54 16 14 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 15 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 16 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 17 C 0.51 14.43 7.67 87.66 0.67 15.11 16 18 O -0.58 -21.67 15.53 -3.02 -0.05 -21.71 16 19 C -0.12 -2.14 2.95 29.10 0.09 -2.05 16 20 C -0.12 -2.18 8.70 24.53 0.21 -1.97 16 21 C -0.13 -1.95 9.79 23.65 0.23 -1.71 16 22 C -0.04 -0.54 5.14 -20.12 -0.10 -0.65 16 23 C -0.13 -1.57 9.78 22.52 0.22 -1.35 16 24 C -0.09 -0.94 10.03 22.22 0.22 -0.71 16 25 C -0.16 -2.01 10.02 22.36 0.22 -1.79 16 26 C 0.08 1.25 7.29 22.34 0.16 1.41 16 27 F -0.15 -2.59 17.26 44.97 0.78 -1.81 16 28 C -0.16 -2.34 7.30 22.57 0.16 -2.17 16 29 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.10 1.22 6.29 -2.39 -0.02 1.21 16 31 H 0.07 1.35 8.00 -2.39 -0.02 1.34 16 32 H 0.06 2.51 7.01 -2.39 -0.02 2.50 16 33 H 0.07 2.61 8.00 -2.39 -0.02 2.59 16 34 H 0.06 2.98 7.95 -2.39 -0.02 2.96 16 35 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 36 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.04 2.33 6.92 -2.39 -0.02 2.32 16 38 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 39 H 0.12 1.91 4.13 -2.39 -0.01 1.90 16 40 H 0.13 1.69 7.96 -2.38 -0.02 1.67 16 41 H 0.12 2.41 8.05 -2.91 -0.02 2.39 16 42 H 0.14 1.74 8.06 -2.92 -0.02 1.72 16 43 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 44 H 0.16 0.81 8.06 -2.91 -0.02 0.79 16 45 H 0.15 1.32 8.06 -2.91 -0.02 1.30 16 46 H 0.15 1.83 6.37 -2.91 -0.02 1.81 16 Total: -1.00 -75.54 383.60 5.25 -70.29 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 0.98 Total: 14.83 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: 6.30 Total: 4.92 kcal Atomic # 7 Polarization: -110.27 SS G_CDS: -4.79 Total: -115.05 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -0.05 Total: -21.71 kcal Atomic # 9 Polarization: -2.59 SS G_CDS: 0.78 Total: -1.81 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -75.54 5.25 -70.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235489263.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.405 kcal (2) G-P(sol) polarization free energy of solvation -75.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds