Wall clock time and date at job start Tue Mar 31 2020 16:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.46497 * 120.00219 * 2 1 4 4 C 1.53003 * 109.46935 * 275.21254 * 3 2 1 5 5 H 1.08998 * 112.74013 * 46.09866 * 4 3 2 6 6 C 1.53499 * 113.46960 * 275.35409 * 4 3 2 7 7 C 1.53683 * 83.28311 * 219.12572 * 6 4 3 8 8 N 1.47069 * 113.46637 * 176.84283 * 4 3 2 9 9 C 1.36931 * 136.05863 * 321.98962 * 8 4 3 10 10 H 1.07994 * 119.99979 * 5.37533 * 9 8 4 11 11 C 1.38813 * 119.99885 * 185.37424 * 9 8 4 12 12 N 1.31617 * 120.00211 * 0.02562 * 11 9 8 13 13 Si 1.86807 * 119.99973 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.46793 * 90.00095 * 13 11 9 15 15 H 1.48500 * 109.47078 * 210.00453 * 13 11 9 16 16 H 1.48494 * 109.47003 * 330.00587 * 13 11 9 17 17 C 1.34778 * 119.99973 * 179.97438 * 2 1 3 18 18 O 1.21279 * 120.00108 * 180.02562 * 17 2 1 19 19 C 1.50699 * 120.00036 * 359.97438 * 17 2 1 20 20 C 1.50707 * 109.47211 * 180.02562 * 19 17 2 21 21 C 1.32573 * 119.99698 * 127.26163 * 20 19 17 22 22 C 1.47791 * 120.00376 * 7.61211 * 21 20 19 23 23 C 1.39549 * 120.11342 * 218.71583 * 22 21 20 24 24 C 1.37938 * 119.87883 * 179.81118 * 23 22 21 25 25 C 1.38567 * 120.11673 * 0.44217 * 24 23 22 26 26 F 1.35105 * 119.88530 * 179.76886 * 25 24 23 27 27 C 1.38574 * 120.23329 * 359.78508 * 25 24 23 28 28 C 1.37919 * 120.11867 * 0.02562 * 27 25 24 29 29 H 1.09001 * 109.46943 * 95.09801 * 1 2 3 30 30 H 1.09005 * 109.47340 * 215.09785 * 1 2 3 31 31 H 1.08995 * 109.47431 * 335.09793 * 1 2 3 32 32 H 1.09001 * 109.47577 * 155.21368 * 3 2 1 33 33 H 1.08994 * 109.47310 * 35.21069 * 3 2 1 34 34 H 1.09008 * 114.20533 * 332.67996 * 6 4 3 35 35 H 1.09005 * 114.20784 * 105.50032 * 6 4 3 36 36 H 1.09001 * 113.46351 * 271.28676 * 7 6 4 37 37 H 1.08999 * 113.52485 * 140.85244 * 7 6 4 38 38 H 0.97004 * 120.00134 * 179.97438 * 12 11 9 39 39 H 1.08994 * 109.47460 * 300.00326 * 19 17 2 40 40 H 1.09007 * 109.46893 * 60.00543 * 19 17 2 41 41 H 1.07998 * 119.99538 * 307.26294 * 20 19 17 42 42 H 1.08007 * 119.99618 * 187.60857 * 21 20 19 43 43 H 1.07998 * 120.06384 * 0.02562 * 23 22 21 44 44 H 1.08007 * 119.93713 * 180.18714 * 24 23 22 45 45 H 1.08004 * 119.93855 * 179.97438 * 27 25 24 46 46 H 1.08001 * 120.06210 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3389 1.7758 -1.4366 5 1 1.4063 1.7176 -1.9977 6 6 3.5391 1.1751 -2.1815 7 6 3.6707 2.5982 -2.7467 8 7 2.9994 3.0864 -1.5326 9 6 2.9927 4.2492 -0.8095 10 1 2.4492 4.3025 0.1222 11 6 3.6846 5.3593 -1.2740 12 7 4.3466 5.2944 -2.4097 13 14 3.6749 6.9459 -0.2879 14 1 4.8143 6.9437 0.6644 15 1 3.8027 8.1027 -1.2102 16 1 2.4000 7.0523 0.4660 17 6 2.1388 -1.1672 0.0005 18 8 3.3516 -1.1672 0.0010 19 6 1.3853 -2.4723 0.0017 20 6 2.3646 -3.6178 0.0027 21 6 2.2670 -4.5725 0.9174 22 6 1.1041 -4.6065 1.8289 23 6 1.2745 -4.9597 3.1682 24 6 0.1865 -4.9860 4.0156 25 6 -1.0754 -4.6715 3.5371 26 9 -2.1385 -4.7033 4.3702 27 6 -1.2507 -4.3247 2.2069 28 6 -0.1690 -4.2915 1.3520 29 1 -0.3633 -0.0913 -1.0236 30 1 -0.3634 -0.8408 0.5909 31 1 -0.3634 0.9321 0.4327 32 1 3.1871 1.1169 0.4308 33 1 1.6521 2.0032 0.5925 34 1 4.3622 0.8738 -1.5335 35 1 3.2734 0.4215 -2.9229 36 1 3.0928 2.7589 -3.6568 37 1 4.7029 2.9364 -2.8377 38 1 4.8298 6.0703 -2.7345 39 1 0.7590 -2.5295 0.8919 40 1 0.7584 -2.5307 -0.8881 41 1 3.1459 -3.6609 -0.7416 42 1 3.0372 -5.3255 0.9963 43 1 2.2569 -5.2086 3.5413 44 1 0.3177 -5.2563 5.0531 45 1 -2.2364 -4.0808 1.8389 46 1 -0.3067 -4.0215 0.3154 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235797891.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:46:01 Heat of formation + Delta-G solvation = 28.856978 kcal Electronic energy + Delta-G solvation = -27738.962176 eV Core-core repulsion = 23738.869953 eV Total energy + Delta-G solvation = -4000.092223 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 2.32 seconds Orbital eigenvalues (eV) -49.20885 -40.13422 -39.35460 -37.89058 -35.36045 -35.05216 -32.18035 -31.67853 -30.57053 -28.92197 -27.85402 -27.47005 -26.05395 -23.45637 -23.34030 -23.04670 -22.09644 -19.78596 -19.16057 -18.95819 -17.85413 -17.15900 -16.68071 -16.52284 -16.15348 -15.97451 -15.77522 -15.58240 -14.82712 -14.65429 -14.23590 -13.97744 -13.93948 -13.69302 -13.46819 -13.31958 -13.10143 -12.90361 -12.67339 -12.42535 -12.20408 -12.02726 -11.92501 -11.43987 -11.39748 -11.26354 -11.04788 -10.81604 -10.74415 -10.37544 -10.03455 -9.82997 -9.77364 -9.65737 -9.46216 -9.32950 -8.76820 -8.45410 -8.25910 -6.83656 -5.74308 -3.06308 0.52348 0.83990 1.98653 2.81263 3.19044 3.32115 3.40345 3.44705 3.46751 3.90051 4.34100 4.38351 4.47522 4.48769 4.62160 4.68973 4.84858 4.96615 4.99479 5.16987 5.24981 5.29755 5.40938 5.44700 5.49957 5.55803 5.62053 5.65513 5.68149 5.73668 5.79171 5.92398 6.00747 6.04385 6.11650 6.29523 6.42947 6.44506 6.53220 6.55278 6.70630 6.79797 6.86152 7.29373 7.49519 7.61151 7.62033 8.00996 8.38307 9.06018 9.73169 10.69248 11.43816 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018927 B = 0.002329 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.984511 B =12020.809185 C =12775.101784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.611 5.611 3 C 0.114 3.886 4 C 0.131 3.869 5 H 0.039 0.961 6 C -0.158 4.158 7 C 0.156 3.844 8 N -0.601 5.601 9 C -0.218 4.218 10 H 0.079 0.921 11 C -0.007 4.007 12 N -0.918 5.918 13 Si 0.911 3.089 14 H -0.288 1.288 15 H -0.290 1.290 16 H -0.281 1.281 17 C 0.513 3.487 18 O -0.531 6.531 19 C -0.130 4.130 20 C -0.098 4.098 21 C -0.138 4.138 22 C -0.059 4.059 23 C -0.082 4.082 24 C -0.152 4.152 25 C 0.093 3.907 26 F -0.141 7.141 27 C -0.153 4.153 28 C -0.090 4.090 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.048 0.952 36 H 0.024 0.976 37 H 0.064 0.936 38 H 0.253 0.747 39 H 0.106 0.894 40 H 0.103 0.897 41 H 0.127 0.873 42 H 0.128 0.872 43 H 0.135 0.865 44 H 0.135 0.865 45 H 0.137 0.863 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.310 -23.583 7.724 27.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.345 5.345 3 C -0.009 4.009 4 C 0.023 3.977 5 H 0.056 0.944 6 C -0.196 4.196 7 C 0.030 3.970 8 N -0.327 5.327 9 C -0.346 4.346 10 H 0.097 0.903 11 C -0.204 4.204 12 N -0.565 5.565 13 Si 0.741 3.259 14 H -0.215 1.215 15 H -0.217 1.217 16 H -0.207 1.207 17 C 0.301 3.699 18 O -0.407 6.407 19 C -0.169 4.169 20 C -0.116 4.116 21 C -0.156 4.156 22 C -0.059 4.059 23 C -0.100 4.100 24 C -0.171 4.171 25 C 0.073 3.927 26 F -0.120 7.120 27 C -0.171 4.171 28 C -0.108 4.108 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.106 0.894 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.067 0.933 36 H 0.041 0.959 37 H 0.083 0.917 38 H 0.063 0.937 39 H 0.124 0.876 40 H 0.121 0.879 41 H 0.145 0.855 42 H 0.145 0.855 43 H 0.153 0.847 44 H 0.153 0.847 45 H 0.155 0.845 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -10.624 -23.182 7.834 26.677 hybrid contribution -0.468 1.077 0.553 1.298 sum -11.092 -22.106 8.388 26.116 Atomic orbital electron populations 1.21784 0.80092 1.02997 1.01670 1.47871 1.06720 1.06625 1.73278 1.21918 0.97567 0.82281 0.99104 1.22410 0.94990 0.87253 0.93058 0.94351 1.23682 0.98892 0.97316 0.99729 1.22003 0.98338 0.87427 0.89184 1.45624 1.49536 1.09977 1.27588 1.18873 1.27671 0.86922 1.01091 0.90276 1.24812 1.00599 0.97789 0.97203 1.69851 1.36260 1.29614 1.20786 0.86146 0.77736 0.83195 0.78839 1.21510 1.21658 1.20700 1.20386 0.88082 0.84903 0.76557 1.90711 1.13762 1.87159 1.49094 1.21274 0.98913 0.91932 1.04798 1.22977 0.98363 0.92731 0.97550 1.21558 0.97006 1.01098 0.95950 1.19192 0.93605 0.99358 0.93770 1.21171 0.98628 0.97820 0.92358 1.21115 0.91296 1.03324 1.01324 1.17817 0.83841 1.02613 0.88393 1.91505 1.55060 1.94132 1.71306 1.21104 1.00628 1.03332 0.92077 1.21328 0.91091 0.98196 1.00179 0.92523 0.91747 0.90709 0.89365 0.91188 0.89987 0.93347 0.95859 0.91721 0.93666 0.87602 0.87898 0.85464 0.85456 0.84719 0.84682 0.84504 0.84401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.78 10.19 59.84 0.61 1.39 16 2 N -0.61 -8.70 2.87 -181.58 -0.52 -9.22 16 3 C 0.11 2.09 5.42 -4.04 -0.02 2.07 16 4 C 0.13 2.73 4.31 -72.39 -0.31 2.42 16 5 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 6 C -0.16 -3.28 7.96 -26.12 -0.21 -3.49 16 7 C 0.16 3.86 7.28 -8.40 -0.06 3.80 16 8 N -0.60 -15.67 3.65 -176.73 -0.64 -16.31 16 9 C -0.22 -6.13 10.55 -15.06 -0.16 -6.29 16 10 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 11 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 12 N -0.92 -27.83 11.65 55.49 0.65 -27.19 16 13 Si 0.91 22.31 29.55 -169.99 -5.02 17.28 16 14 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 15 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 C 0.51 7.37 7.67 -10.99 -0.08 7.28 16 18 O -0.53 -9.74 15.46 5.56 0.09 -9.66 16 19 C -0.13 -1.24 3.09 -29.03 -0.09 -1.33 16 20 C -0.10 -0.93 8.71 -36.21 -0.32 -1.25 16 21 C -0.14 -1.15 9.78 -37.58 -0.37 -1.52 16 22 C -0.06 -0.48 5.13 -105.01 -0.54 -1.02 16 23 C -0.08 -0.63 9.78 -39.20 -0.38 -1.01 16 24 C -0.15 -1.19 10.01 -39.57 -0.40 -1.59 16 25 C 0.09 0.80 7.30 -39.34 -0.29 0.52 16 26 F -0.14 -1.36 17.26 2.25 0.04 -1.33 16 27 C -0.15 -1.14 10.01 -39.57 -0.40 -1.53 16 28 C -0.09 -0.65 7.31 -39.21 -0.29 -0.94 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.47 6.65 -51.93 -0.35 0.13 16 31 H 0.07 0.74 7.89 -51.93 -0.41 0.33 16 32 H 0.09 1.83 7.04 -51.93 -0.37 1.46 16 33 H 0.07 1.27 7.94 -51.93 -0.41 0.86 16 34 H 0.08 1.81 7.96 -51.92 -0.41 1.39 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.06 1.76 7.37 -51.93 -0.38 1.38 16 38 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.11 0.91 4.10 -51.93 -0.21 0.70 16 40 H 0.10 0.75 7.98 -51.93 -0.41 0.34 16 41 H 0.13 1.27 8.05 -52.49 -0.42 0.85 16 42 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 43 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 44 H 0.14 0.83 8.06 -52.48 -0.42 0.41 16 45 H 0.14 0.77 8.06 -52.48 -0.42 0.35 16 46 H 0.14 0.77 6.41 -52.49 -0.34 0.43 16 LS Contribution 384.12 15.07 5.79 5.79 Total: -1.00 -34.08 384.12 -9.67 -43.75 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -6.64 Total: -0.31 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: -3.39 Total: -2.80 kcal Atomic # 7 Polarization: -52.20 SS G_CDS: -0.52 Total: -52.72 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.09 Total: -9.66 kcal Atomic # 9 Polarization: -1.36 SS G_CDS: 0.04 Total: -1.33 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.08 -9.67 -43.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235797891.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.603 kcal (2) G-P(sol) polarization free energy of solvation -34.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.32 seconds