Wall clock time and date at job start Tue Mar 31 2020 16:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.46497 * 120.00219 * 2 1 4 4 C 1.53003 * 109.46935 * 275.21254 * 3 2 1 5 5 H 1.08998 * 112.74013 * 46.09866 * 4 3 2 6 6 C 1.53499 * 113.46960 * 275.35409 * 4 3 2 7 7 C 1.53683 * 83.28311 * 219.12572 * 6 4 3 8 8 N 1.47069 * 113.46637 * 176.84283 * 4 3 2 9 9 C 1.36931 * 136.05863 * 321.98962 * 8 4 3 10 10 H 1.07994 * 119.99979 * 5.37533 * 9 8 4 11 11 C 1.38813 * 119.99885 * 185.37424 * 9 8 4 12 12 N 1.31617 * 120.00211 * 0.02562 * 11 9 8 13 13 Si 1.86807 * 119.99973 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.46793 * 90.00095 * 13 11 9 15 15 H 1.48500 * 109.47078 * 210.00453 * 13 11 9 16 16 H 1.48494 * 109.47003 * 330.00587 * 13 11 9 17 17 C 1.34778 * 119.99973 * 179.97438 * 2 1 3 18 18 O 1.21279 * 120.00108 * 180.02562 * 17 2 1 19 19 C 1.50699 * 120.00036 * 359.97438 * 17 2 1 20 20 C 1.50707 * 109.47211 * 180.02562 * 19 17 2 21 21 C 1.32573 * 119.99698 * 127.26163 * 20 19 17 22 22 C 1.47791 * 120.00376 * 7.61211 * 21 20 19 23 23 C 1.39549 * 120.11342 * 218.71583 * 22 21 20 24 24 C 1.37938 * 119.87883 * 179.81118 * 23 22 21 25 25 C 1.38567 * 120.11673 * 0.44217 * 24 23 22 26 26 F 1.35105 * 119.88530 * 179.76886 * 25 24 23 27 27 C 1.38574 * 120.23329 * 359.78508 * 25 24 23 28 28 C 1.37919 * 120.11867 * 0.02562 * 27 25 24 29 29 H 1.09001 * 109.46943 * 95.09801 * 1 2 3 30 30 H 1.09005 * 109.47340 * 215.09785 * 1 2 3 31 31 H 1.08995 * 109.47431 * 335.09793 * 1 2 3 32 32 H 1.09001 * 109.47577 * 155.21368 * 3 2 1 33 33 H 1.08994 * 109.47310 * 35.21069 * 3 2 1 34 34 H 1.09008 * 114.20533 * 332.67996 * 6 4 3 35 35 H 1.09005 * 114.20784 * 105.50032 * 6 4 3 36 36 H 1.09001 * 113.46351 * 271.28676 * 7 6 4 37 37 H 1.08999 * 113.52485 * 140.85244 * 7 6 4 38 38 H 0.97004 * 120.00134 * 179.97438 * 12 11 9 39 39 H 1.08994 * 109.47460 * 300.00326 * 19 17 2 40 40 H 1.09007 * 109.46893 * 60.00543 * 19 17 2 41 41 H 1.07998 * 119.99538 * 307.26294 * 20 19 17 42 42 H 1.08007 * 119.99618 * 187.60857 * 21 20 19 43 43 H 1.07998 * 120.06384 * 0.02562 * 23 22 21 44 44 H 1.08007 * 119.93713 * 180.18714 * 24 23 22 45 45 H 1.08004 * 119.93855 * 179.97438 * 27 25 24 46 46 H 1.08001 * 120.06210 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3389 1.7758 -1.4366 5 1 1.4063 1.7176 -1.9977 6 6 3.5391 1.1751 -2.1815 7 6 3.6707 2.5982 -2.7467 8 7 2.9994 3.0864 -1.5326 9 6 2.9927 4.2492 -0.8095 10 1 2.4492 4.3025 0.1222 11 6 3.6846 5.3593 -1.2740 12 7 4.3466 5.2944 -2.4097 13 14 3.6749 6.9459 -0.2879 14 1 4.8143 6.9437 0.6644 15 1 3.8027 8.1027 -1.2102 16 1 2.4000 7.0523 0.4660 17 6 2.1388 -1.1672 0.0005 18 8 3.3516 -1.1672 0.0010 19 6 1.3853 -2.4723 0.0017 20 6 2.3646 -3.6178 0.0027 21 6 2.2670 -4.5725 0.9174 22 6 1.1041 -4.6065 1.8289 23 6 1.2745 -4.9597 3.1682 24 6 0.1865 -4.9860 4.0156 25 6 -1.0754 -4.6715 3.5371 26 9 -2.1385 -4.7033 4.3702 27 6 -1.2507 -4.3247 2.2069 28 6 -0.1690 -4.2915 1.3520 29 1 -0.3633 -0.0913 -1.0236 30 1 -0.3634 -0.8408 0.5909 31 1 -0.3634 0.9321 0.4327 32 1 3.1871 1.1169 0.4308 33 1 1.6521 2.0032 0.5925 34 1 4.3622 0.8738 -1.5335 35 1 3.2734 0.4215 -2.9229 36 1 3.0928 2.7589 -3.6568 37 1 4.7029 2.9364 -2.8377 38 1 4.8298 6.0703 -2.7345 39 1 0.7590 -2.5295 0.8919 40 1 0.7584 -2.5307 -0.8881 41 1 3.1459 -3.6609 -0.7416 42 1 3.0372 -5.3255 0.9963 43 1 2.2569 -5.2086 3.5413 44 1 0.3177 -5.2563 5.0531 45 1 -2.2364 -4.0808 1.8389 46 1 -0.3067 -4.0215 0.3154 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235797891.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:45:58 Heat of formation + Delta-G solvation = 10.073234 kcal Electronic energy + Delta-G solvation = -27739.776700 eV Core-core repulsion = 23738.869953 eV Total energy + Delta-G solvation = -4000.906747 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 4.21 seconds Orbital eigenvalues (eV) -49.86611 -41.17443 -40.18571 -39.52673 -36.45555 -35.87443 -34.27518 -32.24682 -31.38882 -30.02723 -29.87938 -28.33050 -27.10681 -25.40618 -24.26123 -23.79850 -23.32223 -21.06434 -20.60838 -19.84898 -18.74264 -18.49182 -17.92970 -17.45393 -17.25617 -16.89048 -16.64668 -16.53703 -16.31092 -15.83149 -15.72190 -15.15872 -14.83453 -14.68921 -14.39424 -14.20506 -13.98820 -13.87959 -13.79095 -13.71052 -13.43443 -13.08955 -13.00695 -12.97130 -12.81352 -12.66064 -12.48921 -12.23201 -11.93764 -11.90224 -11.82184 -11.66716 -11.17118 -10.88283 -10.83032 -10.52570 -10.01327 -9.56086 -9.08753 -8.90707 -7.90875 -5.24172 -0.08597 0.30026 1.31973 1.44563 1.47504 1.55476 1.74173 2.13821 2.49227 2.70586 3.30675 3.32657 3.44355 3.72144 3.76867 3.83570 3.88388 3.97743 4.04665 4.20953 4.28823 4.34669 4.36979 4.42358 4.45851 4.47959 4.59639 4.70085 4.81156 4.86413 4.88166 4.97667 5.00355 5.01447 5.08006 5.09744 5.19197 5.21157 5.22349 5.41645 5.48268 5.53699 5.65648 5.73921 5.80452 5.92368 5.95474 6.53016 6.89635 7.29463 7.60151 8.61940 9.28083 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018927 B = 0.002329 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.984511 B =12020.809185 C =12775.101784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.611 5.611 3 C 0.129 3.871 4 C 0.139 3.861 5 H 0.056 0.944 6 C -0.132 4.132 7 C 0.152 3.848 8 N -0.630 5.630 9 C -0.223 4.223 10 H 0.090 0.910 11 C -0.072 4.072 12 N -0.957 5.957 13 Si 0.980 3.020 14 H -0.288 1.288 15 H -0.295 1.295 16 H -0.263 1.263 17 C 0.506 3.494 18 O -0.579 6.579 19 C -0.115 4.115 20 C -0.119 4.119 21 C -0.124 4.124 22 C -0.073 4.073 23 C -0.088 4.088 24 C -0.158 4.158 25 C 0.073 3.927 26 F -0.151 7.151 27 C -0.152 4.152 28 C -0.089 4.089 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.020 0.980 37 H 0.029 0.971 38 H 0.247 0.753 39 H 0.121 0.879 40 H 0.134 0.866 41 H 0.117 0.883 42 H 0.138 0.862 43 H 0.147 0.853 44 H 0.146 0.854 45 H 0.156 0.844 46 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.696 -25.013 8.496 29.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.344 5.344 3 C 0.004 3.996 4 C 0.032 3.968 5 H 0.073 0.927 6 C -0.170 4.170 7 C 0.026 3.974 8 N -0.357 5.357 9 C -0.351 4.351 10 H 0.107 0.893 11 C -0.265 4.265 12 N -0.606 5.606 13 Si 0.808 3.192 14 H -0.215 1.215 15 H -0.222 1.222 16 H -0.188 1.188 17 C 0.296 3.704 18 O -0.459 6.459 19 C -0.154 4.154 20 C -0.137 4.137 21 C -0.142 4.142 22 C -0.073 4.073 23 C -0.106 4.106 24 C -0.177 4.177 25 C 0.054 3.946 26 F -0.130 7.130 27 C -0.170 4.170 28 C -0.107 4.107 29 H 0.092 0.908 30 H 0.115 0.885 31 H 0.093 0.907 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.038 0.962 37 H 0.047 0.953 38 H 0.056 0.944 39 H 0.139 0.861 40 H 0.152 0.848 41 H 0.135 0.865 42 H 0.156 0.844 43 H 0.165 0.835 44 H 0.164 0.836 45 H 0.173 0.827 46 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -13.073 -24.658 8.627 29.213 hybrid contribution 0.257 1.400 0.340 1.464 sum -12.816 -23.258 8.967 28.029 Atomic orbital electron populations 1.22102 0.77040 1.04541 1.03481 1.47930 1.08466 1.05041 1.72996 1.21407 0.96829 0.84444 0.96886 1.22494 0.95034 0.84404 0.94881 0.92697 1.23406 0.98459 0.95635 0.99514 1.21974 0.96228 0.89934 0.89270 1.45954 1.50795 1.11117 1.27817 1.19318 1.26638 0.87631 1.01511 0.89272 1.25704 1.00926 1.01291 0.98533 1.70048 1.37703 1.30122 1.22750 0.85058 0.78236 0.78698 0.77240 1.21490 1.22194 1.18794 1.21305 0.87831 0.86197 0.75112 1.90695 1.16140 1.87890 1.51165 1.21280 0.98590 0.88676 1.06824 1.22927 0.98903 0.93521 0.98396 1.21694 0.96989 1.00753 0.94791 1.19343 0.94019 0.99978 0.93946 1.21367 0.99222 0.97629 0.92391 1.21297 0.91177 1.03164 1.02054 1.18123 0.83882 1.03588 0.89047 1.91479 1.55510 1.94321 1.71707 1.21338 1.01651 1.02558 0.91485 1.21558 0.90480 0.97530 1.01098 0.90837 0.88453 0.90733 0.92472 0.91095 0.91574 0.90404 0.96179 0.95292 0.94366 0.86133 0.84843 0.86524 0.84410 0.83521 0.83636 0.82654 0.82321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.12 10.19 127.77 1.30 2.42 16 2 N -0.61 -16.01 2.87 -846.79 -2.43 -18.44 16 3 C 0.13 4.62 5.42 86.38 0.47 5.09 16 4 C 0.14 5.67 4.31 41.80 0.18 5.85 16 5 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 6 C -0.13 -5.47 7.96 30.99 0.25 -5.22 16 7 C 0.15 7.70 7.28 83.25 0.61 8.31 16 8 N -0.63 -33.20 3.65 -713.05 -2.60 -35.80 16 9 C -0.22 -12.61 10.55 84.03 0.89 -11.73 16 10 H 0.09 4.72 7.83 -2.91 -0.02 4.69 16 11 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 12 N -0.96 -59.80 11.65 21.65 0.25 -59.55 16 13 Si 0.98 46.40 29.55 68.60 2.03 48.43 16 14 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 15 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 16 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 17 C 0.51 13.55 7.67 87.66 0.67 14.22 16 18 O -0.58 -21.12 15.46 -3.02 -0.05 -21.17 16 19 C -0.12 -1.82 3.09 29.10 0.09 -1.73 16 20 C -0.12 -2.02 8.71 24.53 0.21 -1.81 16 21 C -0.12 -1.79 9.78 23.65 0.23 -1.56 16 22 C -0.07 -1.00 5.13 -20.12 -0.10 -1.10 16 23 C -0.09 -1.18 9.78 22.52 0.22 -0.96 16 24 C -0.16 -2.22 10.01 22.28 0.22 -1.99 16 25 C 0.07 1.12 7.30 22.43 0.16 1.29 16 26 F -0.15 -2.72 17.26 44.97 0.78 -1.95 16 27 C -0.15 -1.81 10.01 22.27 0.22 -1.58 16 28 C -0.09 -0.98 7.31 22.51 0.16 -0.82 16 29 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.10 0.94 6.65 -2.38 -0.02 0.92 16 31 H 0.07 1.23 7.89 -2.39 -0.02 1.21 16 32 H 0.06 2.41 7.04 -2.39 -0.02 2.39 16 33 H 0.07 2.51 7.94 -2.39 -0.02 2.49 16 34 H 0.07 2.97 7.96 -2.38 -0.02 2.95 16 35 H 0.08 2.77 8.14 -2.38 -0.02 2.75 16 36 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.03 1.65 7.37 -2.39 -0.02 1.63 16 38 H 0.25 15.00 8.31 -92.70 -0.77 14.23 16 39 H 0.12 1.58 4.10 -2.39 -0.01 1.57 16 40 H 0.13 1.30 7.98 -2.38 -0.02 1.28 16 41 H 0.12 2.23 8.05 -2.91 -0.02 2.20 16 42 H 0.14 1.63 8.06 -2.91 -0.02 1.60 16 43 H 0.15 1.51 8.06 -2.91 -0.02 1.48 16 44 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 45 H 0.16 1.20 8.06 -2.91 -0.02 1.18 16 46 H 0.16 1.03 6.41 -2.91 -0.02 1.02 16 Total: -1.00 -76.54 384.12 5.21 -71.33 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: 0.98 Total: 12.20 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: 6.26 Total: 4.95 kcal Atomic # 7 Polarization: -109.01 SS G_CDS: -4.78 Total: -113.79 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -0.05 Total: -21.17 kcal Atomic # 9 Polarization: -2.72 SS G_CDS: 0.78 Total: -1.95 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -76.54 5.21 -71.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235797891.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.405 kcal (2) G-P(sol) polarization free energy of solvation -76.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.21 seconds