Wall clock time and date at job start Tue Mar 31 2020 16:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46502 * 120.00306 * 2 1 4 4 C 1.52998 * 109.47012 * 270.27499 * 3 2 1 5 5 H 1.08991 * 112.74066 * 43.12268 * 4 3 2 6 6 C 1.53497 * 113.52024 * 272.32896 * 4 3 2 7 7 C 1.53752 * 83.26148 * 218.97697 * 6 4 3 8 8 N 1.47064 * 87.88493 * 26.24037 * 7 6 4 9 9 C 1.36937 * 136.05696 * 152.96635 * 8 7 6 10 10 H 1.08001 * 120.00024 * 176.66889 * 9 8 7 11 11 C 1.38809 * 119.99955 * 356.39281 * 9 8 7 12 12 N 1.31617 * 120.00254 * 0.27215 * 11 9 8 13 13 Si 1.86806 * 120.00063 * 180.27718 * 11 9 8 14 14 H 1.48500 * 109.46985 * 59.99526 * 13 11 9 15 15 H 1.48498 * 109.47010 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.46985 * 300.00002 * 13 11 9 17 17 C 1.34780 * 120.00056 * 179.97438 * 2 1 3 18 18 O 1.21279 * 120.00345 * 179.97438 * 17 2 1 19 19 C 1.50708 * 119.99779 * 0.02562 * 17 2 1 20 20 C 1.50701 * 109.46908 * 179.97438 * 19 17 2 21 21 C 1.32581 * 119.99860 * 125.00432 * 20 19 17 22 22 C 1.47778 * 119.99867 * 180.02562 * 21 20 19 23 23 C 1.39532 * 120.15675 * 359.97438 * 22 21 20 24 24 C 1.37956 * 119.88295 * 180.02562 * 23 22 21 25 25 C 1.38385 * 120.19560 * 0.02851 * 24 23 22 26 26 C 1.38270 * 120.31083 * 359.97313 * 25 24 23 27 27 C 1.38244 * 120.11722 * 359.71975 * 26 25 24 28 28 F 1.35104 * 120.10100 * 180.26993 * 27 26 25 29 29 H 1.09010 * 109.46879 * 93.32989 * 1 2 3 30 30 H 1.09002 * 109.47413 * 213.33113 * 1 2 3 31 31 H 1.09002 * 109.47148 * 333.33340 * 1 2 3 32 32 H 1.08999 * 109.47204 * 150.27022 * 3 2 1 33 33 H 1.08997 * 109.47086 * 30.27498 * 3 2 1 34 34 H 1.09009 * 114.20585 * 332.73778 * 6 4 3 35 35 H 1.09004 * 114.20699 * 105.35656 * 6 4 3 36 36 H 1.08992 * 113.46494 * 271.50857 * 7 6 4 37 37 H 1.08998 * 113.55255 * 140.98485 * 7 6 4 38 38 H 0.96998 * 120.00460 * 179.97438 * 12 11 9 39 39 H 1.08997 * 109.46727 * 299.99829 * 19 17 2 40 40 H 1.08998 * 109.46957 * 59.99820 * 19 17 2 41 41 H 1.08002 * 120.00239 * 304.99668 * 20 19 17 42 42 H 1.08002 * 119.99901 * 359.97438 * 21 20 19 43 43 H 1.08000 * 120.05870 * 0.03110 * 23 22 21 44 44 H 1.07996 * 119.89833 * 179.97438 * 24 23 22 45 45 H 1.07995 * 119.84372 * 179.97438 * 25 24 23 46 46 H 1.08003 * 119.94265 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4465 1.7138 -1.4425 5 1 1.5732 1.5815 -2.0809 6 6 3.7370 1.1421 -2.0458 7 6 3.8493 2.5416 -2.6727 8 7 3.0514 3.0502 -1.5469 9 6 2.9235 4.2445 -0.8891 10 1 2.1943 4.3507 -0.0995 11 6 3.7349 5.3168 -1.2333 12 7 4.6236 5.1874 -2.1955 13 14 3.5658 6.9436 -0.3308 14 1 3.8366 6.7382 1.1147 15 1 4.5396 7.9194 -0.8827 16 1 2.1869 7.4662 -0.5067 17 6 2.1389 -1.1672 0.0005 18 8 3.3516 -1.1673 0.0001 19 6 1.3853 -2.4724 0.0005 20 6 2.3646 -3.6178 0.0005 21 6 2.2947 -4.5497 0.9410 22 6 3.2554 -5.6726 0.9414 23 6 4.2369 -5.7556 -0.0469 24 6 5.1305 -6.8066 -0.0415 25 6 5.0558 -7.7787 0.9406 26 6 4.0864 -7.7044 1.9237 27 6 3.1883 -6.6534 1.9343 28 9 2.2447 -6.5782 2.8982 29 1 -0.3633 -0.0597 -1.0260 30 1 -0.3634 -0.8586 0.5647 31 1 -0.3633 0.9184 0.4612 32 1 3.1520 1.1371 0.5096 33 1 1.6106 2.0271 0.5181 34 1 4.5105 0.9140 -1.3124 35 1 3.5765 0.3400 -2.7663 36 1 3.3456 2.6275 -3.6354 37 1 4.8677 2.9293 -2.6930 38 1 5.1904 5.9368 -2.4363 39 1 0.7583 -2.5298 0.8903 40 1 0.7590 -2.5302 -0.8897 41 1 3.1233 -3.6797 -0.7657 42 1 1.5362 -4.4876 1.7074 43 1 4.2971 -4.9984 -0.8146 44 1 5.8901 -6.8714 -0.8065 45 1 5.7580 -8.5992 0.9392 46 1 4.0332 -8.4665 2.6871 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235799046.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:46:17 Heat of formation + Delta-G solvation = 23.876656 kcal Electronic energy + Delta-G solvation = -27292.974743 eV Core-core repulsion = 23292.666557 eV Total energy + Delta-G solvation = -4000.308186 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 2.44 seconds Orbital eigenvalues (eV) -49.13546 -39.88494 -39.25431 -37.88830 -35.40240 -35.05416 -32.19059 -31.55952 -30.83146 -28.86922 -27.84495 -27.27751 -25.95723 -23.71763 -23.34202 -22.66058 -21.94868 -19.80474 -19.14941 -18.90878 -17.99255 -17.00717 -16.67549 -16.59119 -16.26649 -15.87428 -15.83694 -15.47877 -14.74089 -14.57178 -14.40681 -13.90748 -13.75890 -13.50927 -13.37493 -13.22939 -12.95526 -12.79862 -12.68888 -12.41602 -12.24563 -11.97853 -11.92544 -11.44297 -11.34714 -11.26827 -11.03126 -10.82946 -10.70466 -10.56724 -10.39308 -9.81204 -9.73311 -9.63350 -9.38626 -9.16012 -8.74599 -8.36372 -8.25628 -6.83109 -5.72073 -3.05648 0.50698 0.89760 2.17006 2.81059 3.21597 3.40678 3.44175 3.45701 3.46287 3.92870 4.28944 4.39229 4.47749 4.59273 4.65276 4.82833 4.88562 4.96753 5.02930 5.18103 5.27191 5.31438 5.35901 5.41976 5.50887 5.56500 5.65512 5.68230 5.71990 5.80735 5.89163 5.94214 6.05272 6.09892 6.11838 6.35569 6.44582 6.46469 6.57611 6.59313 6.70172 6.83739 6.86554 7.30320 7.51213 7.61858 7.65322 8.03628 8.38317 9.06580 9.74146 10.69903 11.44620 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020925 B = 0.002086 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.764790 B =13417.951662 C =13957.201057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.613 5.613 3 C 0.116 3.884 4 C 0.131 3.869 5 H 0.039 0.961 6 C -0.153 4.153 7 C 0.147 3.853 8 N -0.602 5.602 9 C -0.218 4.218 10 H 0.078 0.922 11 C -0.007 4.007 12 N -0.918 5.918 13 Si 0.911 3.089 14 H -0.284 1.284 15 H -0.290 1.290 16 H -0.286 1.286 17 C 0.512 3.488 18 O -0.528 6.528 19 C -0.114 4.114 20 C -0.098 4.098 21 C -0.135 4.135 22 C -0.076 4.076 23 C -0.088 4.088 24 C -0.126 4.126 25 C -0.097 4.097 26 C -0.154 4.154 27 C 0.100 3.900 28 F -0.138 7.138 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.047 0.953 36 H 0.020 0.980 37 H 0.074 0.926 38 H 0.254 0.746 39 H 0.097 0.903 40 H 0.106 0.894 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.138 0.862 44 H 0.131 0.869 45 H 0.131 0.869 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.404 -25.986 4.881 27.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.347 5.347 3 C -0.007 4.007 4 C 0.023 3.977 5 H 0.056 0.944 6 C -0.191 4.191 7 C 0.022 3.978 8 N -0.328 5.328 9 C -0.346 4.346 10 H 0.096 0.904 11 C -0.204 4.204 12 N -0.565 5.565 13 Si 0.742 3.258 14 H -0.211 1.211 15 H -0.216 1.216 16 H -0.213 1.213 17 C 0.299 3.701 18 O -0.404 6.404 19 C -0.153 4.153 20 C -0.116 4.116 21 C -0.153 4.153 22 C -0.077 4.077 23 C -0.106 4.106 24 C -0.144 4.144 25 C -0.115 4.115 26 C -0.172 4.172 27 C 0.081 3.919 28 F -0.116 7.116 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.065 0.935 36 H 0.037 0.963 37 H 0.092 0.908 38 H 0.064 0.936 39 H 0.115 0.885 40 H 0.124 0.876 41 H 0.141 0.859 42 H 0.139 0.861 43 H 0.155 0.845 44 H 0.149 0.851 45 H 0.149 0.851 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.703 -25.581 5.004 26.683 hybrid contribution -0.558 1.071 0.553 1.328 sum -6.261 -24.510 5.557 25.901 Atomic orbital electron populations 1.21802 0.80036 1.02954 1.01769 1.47924 1.06750 1.06663 1.73314 1.21932 0.97273 0.82299 0.99231 1.22425 0.95039 0.86996 0.93233 0.94373 1.23651 0.98309 0.97031 1.00128 1.22157 0.97919 0.88012 0.89722 1.45625 1.46238 1.06013 1.34884 1.18815 1.16183 0.86645 1.12924 0.90418 1.24791 0.98518 0.98178 0.98934 1.69824 1.24328 1.30902 1.31425 0.86216 0.77167 0.83356 0.79093 1.21064 1.21558 1.21251 1.20367 0.88120 0.84848 0.76749 1.90724 1.13680 1.87126 1.48845 1.20822 0.98212 0.91559 1.04744 1.22983 0.97533 0.92821 0.98267 1.21426 0.99207 0.94598 1.00045 1.19056 0.97903 0.95259 0.95475 1.21319 0.93426 0.98192 0.97627 1.21188 0.99446 0.94502 0.99258 1.21061 0.97522 0.99035 0.93905 1.21079 0.96455 0.98427 1.01288 1.17770 0.89510 0.96589 0.88035 1.91481 1.62721 1.96163 1.61244 0.92557 0.91556 0.90803 0.89617 0.90952 0.89991 0.93459 0.96252 0.90787 0.93630 0.88515 0.87611 0.85865 0.86054 0.84459 0.85116 0.85083 0.84785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.76 10.23 59.84 0.61 1.38 16 2 N -0.61 -8.72 2.87 -181.57 -0.52 -9.24 16 3 C 0.12 2.12 5.40 -4.04 -0.02 2.10 16 4 C 0.13 2.75 4.31 -72.39 -0.31 2.44 16 5 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 6 C -0.15 -3.23 7.47 -26.08 -0.19 -3.42 16 7 C 0.15 3.67 7.49 -8.37 -0.06 3.60 16 8 N -0.60 -15.72 3.65 -176.84 -0.64 -16.36 16 9 C -0.22 -6.13 10.55 -15.06 -0.16 -6.28 16 10 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 11 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 12 N -0.92 -27.79 11.45 55.49 0.64 -27.16 16 13 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 15 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 16 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 17 C 0.51 7.37 7.67 -10.98 -0.08 7.28 16 18 O -0.53 -9.72 15.05 5.56 0.08 -9.63 16 19 C -0.11 -1.10 4.75 -29.03 -0.14 -1.24 16 20 C -0.10 -1.02 8.18 -36.21 -0.30 -1.32 16 21 C -0.13 -1.39 9.31 -37.59 -0.35 -1.74 16 22 C -0.08 -0.80 5.87 -104.96 -0.62 -1.42 16 23 C -0.09 -0.82 9.40 -39.20 -0.37 -1.19 16 24 C -0.13 -0.98 10.03 -39.63 -0.40 -1.37 16 25 C -0.10 -0.70 10.04 -39.52 -0.40 -1.10 16 26 C -0.15 -1.27 10.01 -39.57 -0.40 -1.67 16 27 C 0.10 1.03 7.28 -39.02 -0.28 0.75 16 28 F -0.14 -1.51 16.62 2.25 0.04 -1.47 16 29 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 30 H 0.07 0.46 6.58 -51.93 -0.34 0.12 16 31 H 0.07 0.71 7.86 -51.93 -0.41 0.31 16 32 H 0.09 1.78 7.13 -51.93 -0.37 1.41 16 33 H 0.07 1.31 7.87 -51.93 -0.41 0.91 16 34 H 0.08 1.84 7.93 -51.92 -0.41 1.43 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.07 2.04 6.98 -51.93 -0.36 1.67 16 38 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 39 H 0.10 0.75 7.08 -51.93 -0.37 0.38 16 40 H 0.11 0.81 8.11 -51.93 -0.42 0.38 16 41 H 0.12 1.32 6.04 -52.49 -0.32 1.00 16 42 H 0.12 1.15 7.55 -52.49 -0.40 0.76 16 43 H 0.14 1.17 6.17 -52.49 -0.32 0.85 16 44 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 45 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 46 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 LS Contribution 386.15 15.07 5.82 5.82 Total: -1.00 -34.24 386.15 -9.81 -44.05 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -6.63 Total: 0.24 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -3.56 Total: -3.51 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: -0.53 Total: -52.76 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.08 Total: -9.63 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.24 -9.81 -44.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235799046.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.923 kcal (2) G-P(sol) polarization free energy of solvation -34.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.44 seconds