Wall clock time and date at job start Tue Mar 31 2020 16:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46508 * 119.99848 * 2 1 4 4 C 1.53000 * 109.47042 * 274.41706 * 3 2 1 5 5 H 1.08999 * 112.73978 * 313.79668 * 4 3 2 6 6 C 1.53497 * 113.46426 * 84.54373 * 4 3 2 7 7 C 1.53610 * 83.30676 * 140.82674 * 6 4 3 8 8 N 1.47063 * 88.00491 * 333.97701 * 7 6 4 9 9 C 1.36935 * 136.06124 * 207.10793 * 8 7 6 10 10 H 1.08008 * 120.00549 * 184.78489 * 9 8 7 11 11 C 1.38817 * 119.99925 * 4.77607 * 9 8 7 12 12 N 1.31619 * 119.99609 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00085 * 180.02562 * 11 9 8 14 14 H 1.48507 * 109.47126 * 90.00582 * 13 11 9 15 15 H 1.48500 * 109.47183 * 210.00330 * 13 11 9 16 16 H 1.48497 * 109.47609 * 330.00464 * 13 11 9 17 17 C 1.34778 * 120.00430 * 180.02562 * 2 1 3 18 18 O 1.21281 * 120.00139 * 175.31870 * 17 2 1 19 19 C 1.50697 * 119.99695 * 355.31508 * 17 2 1 20 20 C 1.50700 * 109.47260 * 180.02562 * 19 17 2 21 21 C 1.32585 * 120.00041 * 126.87783 * 20 19 17 22 22 C 1.47778 * 120.00118 * 7.18485 * 21 20 19 23 23 C 1.39531 * 120.15468 * 38.49475 * 22 21 20 24 24 C 1.37958 * 119.88305 * 180.02562 * 23 22 21 25 25 C 1.38384 * 120.19314 * 359.97438 * 24 23 22 26 26 C 1.38271 * 120.31336 * 0.04700 * 25 24 23 27 27 C 1.38245 * 120.11525 * 359.95194 * 26 25 24 28 28 F 1.35103 * 120.09831 * 180.02562 * 27 26 25 29 29 H 1.09002 * 109.47081 * 269.99627 * 1 2 3 30 30 H 1.08999 * 109.47610 * 29.99609 * 1 2 3 31 31 H 1.08999 * 109.46942 * 150.00403 * 1 2 3 32 32 H 1.08997 * 109.46844 * 34.42193 * 3 2 1 33 33 H 1.09002 * 109.47045 * 154.41881 * 3 2 1 34 34 H 1.09000 * 114.20246 * 254.43262 * 6 4 3 35 35 H 1.08994 * 114.20915 * 27.25617 * 6 4 3 36 36 H 1.08998 * 113.50883 * 219.18125 * 7 6 4 37 37 H 1.09001 * 113.46691 * 88.76084 * 7 6 4 38 38 H 0.97006 * 119.99781 * 179.97438 * 12 11 9 39 39 H 1.09002 * 109.47315 * 60.00074 * 19 17 2 40 40 H 1.09005 * 109.47348 * 299.99714 * 19 17 2 41 41 H 1.08001 * 119.99684 * 306.88619 * 20 19 17 42 42 H 1.07998 * 120.00084 * 187.17239 * 21 20 19 43 43 H 1.07999 * 120.06148 * 359.75490 * 23 22 21 44 44 H 1.08002 * 119.90134 * 179.97438 * 24 23 22 45 45 H 1.07993 * 119.84317 * 179.97438 * 25 24 23 46 46 H 1.07997 * 119.94507 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3562 1.7660 -1.4382 5 1 2.6830 0.9821 -2.1214 6 6 1.1433 2.5558 -1.9493 7 6 2.2186 3.4352 -2.6049 8 7 3.1439 3.0033 -1.5466 9 6 4.2511 3.5241 -0.9318 10 1 4.7965 2.9335 -0.2105 11 6 4.6728 4.8113 -1.2358 12 7 4.0080 5.5312 -2.1146 13 14 6.1836 5.5215 -0.3978 14 1 7.3911 5.2032 -1.2015 15 1 6.0395 6.9951 -0.2835 16 1 6.3215 4.9311 0.9577 17 6 2.1389 -1.1672 -0.0005 18 8 3.3487 -1.1688 -0.0862 19 6 1.3892 -2.4701 0.1055 20 6 2.3678 -3.6160 0.0831 21 6 2.3411 -4.5294 1.0438 22 6 1.2557 -4.5156 2.0465 23 6 -0.0489 -4.2024 1.6632 24 6 -1.0577 -4.1907 2.6040 25 6 -0.7797 -4.4891 3.9264 26 6 0.5103 -4.8002 4.3153 27 6 1.5310 -4.8158 3.3831 28 9 2.7912 -5.1203 3.7634 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 1.6449 2.0073 0.5809 33 1 3.1819 1.1200 0.4437 34 1 0.5199 2.0090 -2.6568 35 1 0.5733 3.0558 -1.1663 36 1 1.9886 4.5001 -2.5723 37 1 2.5088 3.0970 -3.5996 38 1 4.3025 6.4308 -2.3267 39 1 0.7013 -2.5629 -0.7349 40 1 0.8272 -2.4910 1.0392 41 1 3.0909 -3.6930 -0.7154 42 1 3.1124 -5.2837 1.0933 43 1 -0.2677 -3.9653 0.6325 44 1 -2.0675 -3.9478 2.3077 45 1 -1.5737 -4.4778 4.6583 46 1 0.7207 -5.0317 5.3489 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235799049.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:46:29 Heat of formation + Delta-G solvation = 31.049769 kcal Electronic energy + Delta-G solvation = -27912.696408 eV Core-core repulsion = 23912.699272 eV Total energy + Delta-G solvation = -3999.997136 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.11259 -40.08523 -39.30217 -37.98631 -35.49179 -35.09858 -32.15351 -31.04364 -30.85188 -29.06096 -27.90976 -27.54512 -26.02545 -23.50526 -23.38814 -22.86230 -22.10758 -19.77602 -19.23459 -18.97294 -17.65164 -17.00380 -16.81873 -16.57987 -16.19695 -15.97869 -15.67516 -15.63712 -14.84327 -14.72098 -14.54472 -13.93029 -13.80201 -13.53766 -13.43914 -13.15602 -12.88797 -12.73367 -12.70139 -12.44428 -12.36602 -11.99273 -11.84004 -11.72691 -11.47014 -11.08742 -11.07190 -10.84576 -10.70769 -10.41847 -10.16750 -9.83094 -9.76269 -9.68001 -9.41875 -9.14501 -8.73736 -8.52790 -8.26500 -6.82729 -5.71266 -3.04610 0.56123 0.82651 2.02762 2.81575 3.20329 3.32604 3.43557 3.48684 3.50492 3.92231 4.32188 4.40327 4.50727 4.56536 4.62684 4.69314 4.87557 4.94861 5.06015 5.11518 5.23104 5.28607 5.38582 5.42189 5.51844 5.55256 5.58259 5.67825 5.71883 5.78089 5.84200 5.89593 6.00219 6.01159 6.20200 6.31194 6.33467 6.41247 6.47268 6.54898 6.58041 6.71560 6.89164 7.27615 7.46916 7.60701 7.63113 8.04570 8.39010 9.09602 9.75892 10.69445 11.45431 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017310 B = 0.002496 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.131951 B =11215.190583 C =11895.638735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.611 5.611 3 C 0.115 3.885 4 C 0.135 3.865 5 H 0.043 0.957 6 C -0.167 4.167 7 C 0.148 3.852 8 N -0.600 5.600 9 C -0.214 4.214 10 H 0.080 0.920 11 C -0.008 4.008 12 N -0.921 5.921 13 Si 0.911 3.089 14 H -0.289 1.289 15 H -0.290 1.290 16 H -0.280 1.280 17 C 0.510 3.490 18 O -0.533 6.533 19 C -0.130 4.130 20 C -0.095 4.095 21 C -0.138 4.138 22 C -0.082 4.082 23 C -0.091 4.091 24 C -0.130 4.130 25 C -0.094 4.094 26 C -0.154 4.154 27 C 0.105 3.895 28 F -0.135 7.135 29 H 0.053 0.947 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.053 0.947 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.020 0.980 38 H 0.252 0.748 39 H 0.104 0.896 40 H 0.108 0.892 41 H 0.128 0.872 42 H 0.128 0.872 43 H 0.138 0.862 44 H 0.132 0.868 45 H 0.132 0.868 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.993 -21.753 8.470 28.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.345 5.345 3 C -0.008 4.008 4 C 0.027 3.973 5 H 0.060 0.940 6 C -0.205 4.205 7 C 0.023 3.977 8 N -0.326 5.326 9 C -0.341 4.341 10 H 0.098 0.902 11 C -0.204 4.204 12 N -0.568 5.568 13 Si 0.742 3.258 14 H -0.216 1.216 15 H -0.217 1.217 16 H -0.205 1.205 17 C 0.297 3.703 18 O -0.409 6.409 19 C -0.169 4.169 20 C -0.114 4.114 21 C -0.156 4.156 22 C -0.083 4.083 23 C -0.109 4.109 24 C -0.148 4.148 25 C -0.112 4.112 26 C -0.173 4.173 27 C 0.085 3.915 28 F -0.113 7.113 29 H 0.071 0.929 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.071 0.929 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.038 0.962 38 H 0.062 0.938 39 H 0.122 0.878 40 H 0.126 0.874 41 H 0.146 0.854 42 H 0.145 0.855 43 H 0.156 0.844 44 H 0.150 0.850 45 H 0.150 0.850 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -15.025 -21.468 8.528 27.556 hybrid contribution 1.134 0.353 0.380 1.247 sum -13.891 -21.115 8.908 26.798 Atomic orbital electron populations 1.21814 0.80001 1.03335 1.01488 1.47885 1.06805 1.06482 1.73283 1.21875 0.97354 0.82456 0.99105 1.22405 0.90562 0.90788 0.93574 0.93978 1.23748 0.96262 0.99986 1.00547 1.22104 0.85799 0.99272 0.90537 1.45637 1.31437 1.15394 1.40166 1.18945 1.01524 0.96088 1.17574 0.90240 1.24776 0.99523 0.96551 0.99595 1.69829 1.40740 1.10294 1.35961 0.86124 0.82506 0.78184 0.79024 1.21638 1.21653 1.20539 1.20464 0.88052 0.85039 0.76718 1.90739 1.14187 1.87117 1.48839 1.21312 0.98882 0.91843 1.04866 1.22955 0.97952 0.92639 0.97821 1.21459 0.97750 1.01724 0.94631 1.19163 0.95006 1.02104 0.91991 1.21364 0.90930 0.98083 1.00523 1.21177 0.99596 1.00889 0.93131 1.21068 0.95781 0.97930 0.96463 1.21127 0.92707 1.03652 0.99768 1.17843 0.79589 1.01292 0.92733 1.91507 1.37795 1.90378 1.91649 0.92882 0.90311 0.91517 0.90514 0.89963 0.92888 0.90547 0.90552 0.96197 0.93756 0.87776 0.87418 0.85389 0.85457 0.84436 0.85036 0.85031 0.84718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.74 10.23 59.84 0.61 1.35 16 2 N -0.61 -8.90 2.87 -181.57 -0.52 -9.42 16 3 C 0.12 2.15 5.35 -4.04 -0.02 2.13 16 4 C 0.13 2.84 4.31 -72.39 -0.31 2.53 16 5 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 6 C -0.17 -3.10 7.01 -26.16 -0.18 -3.28 16 7 C 0.15 3.56 7.52 -8.45 -0.06 3.50 16 8 N -0.60 -15.80 3.65 -176.80 -0.64 -16.45 16 9 C -0.21 -6.19 10.55 -15.06 -0.16 -6.35 16 10 H 0.08 2.27 7.83 -52.48 -0.41 1.86 16 11 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 12 N -0.92 -27.86 11.43 55.49 0.63 -27.22 16 13 Si 0.91 22.86 29.55 -169.99 -5.02 17.84 16 14 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 15 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 17 C 0.51 7.85 7.66 -10.99 -0.08 7.77 16 18 O -0.53 -10.81 15.59 5.56 0.09 -10.73 16 19 C -0.13 -1.34 3.13 -29.04 -0.09 -1.43 16 20 C -0.10 -1.05 8.71 -36.21 -0.32 -1.36 16 21 C -0.14 -1.44 9.45 -37.59 -0.36 -1.80 16 22 C -0.08 -0.81 5.17 -104.96 -0.54 -1.35 16 23 C -0.09 -0.68 7.30 -39.20 -0.29 -0.97 16 24 C -0.13 -0.80 10.03 -39.63 -0.40 -1.20 16 25 C -0.09 -0.61 10.04 -39.52 -0.40 -1.01 16 26 C -0.15 -1.25 10.01 -39.57 -0.40 -1.65 16 27 C 0.10 1.09 7.28 -39.02 -0.28 0.81 16 28 F -0.13 -1.61 16.83 2.25 0.04 -1.57 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.76 7.02 -51.93 -0.36 0.40 16 31 H 0.07 0.45 6.47 -51.93 -0.34 0.12 16 32 H 0.08 1.38 7.88 -51.93 -0.41 0.97 16 33 H 0.08 1.80 7.36 -51.93 -0.38 1.42 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 1.35 7.96 -51.93 -0.41 0.94 16 36 H 0.08 2.01 6.93 -51.93 -0.36 1.65 16 37 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.10 0.77 7.14 -51.93 -0.37 0.40 16 40 H 0.11 0.99 4.74 -51.93 -0.25 0.75 16 41 H 0.13 1.46 8.05 -52.49 -0.42 1.03 16 42 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 43 H 0.14 0.78 6.33 -52.49 -0.33 0.45 16 44 H 0.13 0.49 8.06 -52.49 -0.42 0.06 16 45 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 46 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 381.30 15.07 5.75 5.75 Total: -1.00 -35.51 381.30 -9.62 -45.14 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -6.57 Total: -0.69 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -3.37 Total: -2.63 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: -0.53 Total: -53.09 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.09 Total: -10.73 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.51 -9.62 -45.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235799049.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.186 kcal (2) G-P(sol) polarization free energy of solvation -35.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds