Wall clock time and date at job start Tue Mar 31 2020 16:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46508 * 119.99848 * 2 1 4 4 C 1.53000 * 109.47042 * 274.41706 * 3 2 1 5 5 H 1.08999 * 112.73978 * 313.79668 * 4 3 2 6 6 C 1.53497 * 113.46426 * 84.54373 * 4 3 2 7 7 C 1.53610 * 83.30676 * 140.82674 * 6 4 3 8 8 N 1.47063 * 88.00491 * 333.97701 * 7 6 4 9 9 C 1.36935 * 136.06124 * 207.10793 * 8 7 6 10 10 H 1.08008 * 120.00549 * 184.78489 * 9 8 7 11 11 C 1.38817 * 119.99925 * 4.77607 * 9 8 7 12 12 N 1.31619 * 119.99609 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00085 * 180.02562 * 11 9 8 14 14 H 1.48507 * 109.47126 * 90.00582 * 13 11 9 15 15 H 1.48500 * 109.47183 * 210.00330 * 13 11 9 16 16 H 1.48497 * 109.47609 * 330.00464 * 13 11 9 17 17 C 1.34778 * 120.00430 * 180.02562 * 2 1 3 18 18 O 1.21281 * 120.00139 * 175.31870 * 17 2 1 19 19 C 1.50697 * 119.99695 * 355.31508 * 17 2 1 20 20 C 1.50700 * 109.47260 * 180.02562 * 19 17 2 21 21 C 1.32585 * 120.00041 * 126.87783 * 20 19 17 22 22 C 1.47778 * 120.00118 * 7.18485 * 21 20 19 23 23 C 1.39531 * 120.15468 * 38.49475 * 22 21 20 24 24 C 1.37958 * 119.88305 * 180.02562 * 23 22 21 25 25 C 1.38384 * 120.19314 * 359.97438 * 24 23 22 26 26 C 1.38271 * 120.31336 * 0.04700 * 25 24 23 27 27 C 1.38245 * 120.11525 * 359.95194 * 26 25 24 28 28 F 1.35103 * 120.09831 * 180.02562 * 27 26 25 29 29 H 1.09002 * 109.47081 * 269.99627 * 1 2 3 30 30 H 1.08999 * 109.47610 * 29.99609 * 1 2 3 31 31 H 1.08999 * 109.46942 * 150.00403 * 1 2 3 32 32 H 1.08997 * 109.46844 * 34.42193 * 3 2 1 33 33 H 1.09002 * 109.47045 * 154.41881 * 3 2 1 34 34 H 1.09000 * 114.20246 * 254.43262 * 6 4 3 35 35 H 1.08994 * 114.20915 * 27.25617 * 6 4 3 36 36 H 1.08998 * 113.50883 * 219.18125 * 7 6 4 37 37 H 1.09001 * 113.46691 * 88.76084 * 7 6 4 38 38 H 0.97006 * 119.99781 * 179.97438 * 12 11 9 39 39 H 1.09002 * 109.47315 * 60.00074 * 19 17 2 40 40 H 1.09005 * 109.47348 * 299.99714 * 19 17 2 41 41 H 1.08001 * 119.99684 * 306.88619 * 20 19 17 42 42 H 1.07998 * 120.00084 * 187.17239 * 21 20 19 43 43 H 1.07999 * 120.06148 * 359.75490 * 23 22 21 44 44 H 1.08002 * 119.90134 * 179.97438 * 24 23 22 45 45 H 1.07993 * 119.84317 * 179.97438 * 25 24 23 46 46 H 1.07997 * 119.94507 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3562 1.7660 -1.4382 5 1 2.6830 0.9821 -2.1214 6 6 1.1433 2.5558 -1.9493 7 6 2.2186 3.4352 -2.6049 8 7 3.1439 3.0033 -1.5466 9 6 4.2511 3.5241 -0.9318 10 1 4.7965 2.9335 -0.2105 11 6 4.6728 4.8113 -1.2358 12 7 4.0080 5.5312 -2.1146 13 14 6.1836 5.5215 -0.3978 14 1 7.3911 5.2032 -1.2015 15 1 6.0395 6.9951 -0.2835 16 1 6.3215 4.9311 0.9577 17 6 2.1389 -1.1672 -0.0005 18 8 3.3487 -1.1688 -0.0862 19 6 1.3892 -2.4701 0.1055 20 6 2.3678 -3.6160 0.0831 21 6 2.3411 -4.5294 1.0438 22 6 1.2557 -4.5156 2.0465 23 6 -0.0489 -4.2024 1.6632 24 6 -1.0577 -4.1907 2.6040 25 6 -0.7797 -4.4891 3.9264 26 6 0.5103 -4.8002 4.3153 27 6 1.5310 -4.8158 3.3831 28 9 2.7912 -5.1203 3.7634 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 1.6449 2.0073 0.5809 33 1 3.1819 1.1200 0.4437 34 1 0.5199 2.0090 -2.6568 35 1 0.5733 3.0558 -1.1663 36 1 1.9886 4.5001 -2.5723 37 1 2.5088 3.0970 -3.5996 38 1 4.3025 6.4308 -2.3267 39 1 0.7013 -2.5629 -0.7349 40 1 0.8272 -2.4910 1.0392 41 1 3.0909 -3.6930 -0.7154 42 1 3.1124 -5.2837 1.0933 43 1 -0.2677 -3.9653 0.6325 44 1 -2.0675 -3.9478 2.3077 45 1 -1.5737 -4.4778 4.6583 46 1 0.7207 -5.0317 5.3489 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235799049.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:46:27 Heat of formation + Delta-G solvation = 9.857854 kcal Electronic energy + Delta-G solvation = -27913.615358 eV Core-core repulsion = 23912.699272 eV Total energy + Delta-G solvation = -4000.916086 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -49.90026 -41.20484 -40.13017 -39.58490 -36.49746 -36.14603 -34.29057 -31.80676 -31.47439 -30.18165 -29.92362 -28.48467 -27.09532 -25.43412 -24.36417 -23.46665 -23.44659 -21.09892 -20.63529 -19.97238 -18.77152 -18.38739 -17.91762 -17.52377 -17.27141 -17.01887 -16.71036 -16.59208 -16.34443 -15.92009 -15.71337 -15.34503 -14.95415 -14.63708 -14.34432 -14.32152 -14.04592 -13.83758 -13.66145 -13.45488 -13.36752 -13.21108 -13.04376 -12.92381 -12.78389 -12.60586 -12.50140 -12.32617 -12.23664 -11.81303 -11.74132 -11.62768 -11.25304 -10.99348 -10.86228 -10.69821 -9.75081 -9.57174 -9.22570 -8.92022 -7.92536 -5.26793 -0.07008 0.26305 1.25773 1.40975 1.43144 1.51987 1.66654 2.11463 2.46454 2.71686 3.27091 3.31297 3.47941 3.61698 3.63785 3.81833 3.87795 3.92746 4.14565 4.21661 4.29150 4.35452 4.37813 4.41181 4.43355 4.53375 4.57021 4.72137 4.75828 4.87260 4.94618 4.97867 5.00072 5.04202 5.10915 5.13118 5.18752 5.23247 5.31261 5.47361 5.48439 5.54835 5.57729 5.64401 5.76422 5.95501 5.98243 6.49609 6.90486 7.23558 7.58057 8.59572 9.23731 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017310 B = 0.002496 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.131951 B =11215.190583 C =11895.638735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.607 5.607 3 C 0.130 3.870 4 C 0.135 3.865 5 H 0.026 0.974 6 C -0.123 4.123 7 C 0.137 3.863 8 N -0.633 5.633 9 C -0.226 4.226 10 H 0.070 0.930 11 C -0.063 4.063 12 N -0.949 5.949 13 Si 0.975 3.025 14 H -0.290 1.290 15 H -0.286 1.286 16 H -0.271 1.271 17 C 0.500 3.500 18 O -0.596 6.596 19 C -0.112 4.112 20 C -0.113 4.113 21 C -0.134 4.134 22 C -0.104 4.104 23 C -0.092 4.092 24 C -0.120 4.120 25 C -0.091 4.091 26 C -0.162 4.162 27 C 0.068 3.932 28 F -0.156 7.156 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.104 0.896 32 H 0.087 0.913 33 H 0.038 0.962 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.048 0.952 37 H 0.009 0.991 38 H 0.249 0.751 39 H 0.145 0.855 40 H 0.127 0.873 41 H 0.114 0.886 42 H 0.120 0.880 43 H 0.161 0.839 44 H 0.168 0.832 45 H 0.162 0.838 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.023 -22.765 9.280 31.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.340 5.340 3 C 0.005 3.995 4 C 0.028 3.972 5 H 0.043 0.957 6 C -0.161 4.161 7 C 0.012 3.988 8 N -0.359 5.359 9 C -0.354 4.354 10 H 0.088 0.912 11 C -0.256 4.256 12 N -0.598 5.598 13 Si 0.803 3.197 14 H -0.217 1.217 15 H -0.212 1.212 16 H -0.196 1.196 17 C 0.290 3.710 18 O -0.477 6.477 19 C -0.150 4.150 20 C -0.131 4.131 21 C -0.152 4.152 22 C -0.105 4.105 23 C -0.109 4.109 24 C -0.138 4.138 25 C -0.108 4.108 26 C -0.181 4.181 27 C 0.049 3.951 28 F -0.135 7.135 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.122 0.878 32 H 0.105 0.895 33 H 0.057 0.943 34 H 0.115 0.885 35 H 0.111 0.889 36 H 0.066 0.934 37 H 0.027 0.973 38 H 0.058 0.942 39 H 0.162 0.838 40 H 0.144 0.856 41 H 0.132 0.868 42 H 0.138 0.862 43 H 0.178 0.822 44 H 0.185 0.815 45 H 0.179 0.821 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -19.124 -22.516 9.349 30.985 hybrid contribution 2.325 0.570 0.144 2.398 sum -16.799 -21.945 9.493 29.222 Atomic orbital electron populations 1.22234 0.76193 1.05473 1.03650 1.47956 1.08954 1.04599 1.72475 1.21397 0.96192 0.84823 0.97051 1.22481 0.90794 0.89110 0.94836 0.95667 1.23500 0.94718 0.97390 1.00517 1.22171 0.87849 0.98662 0.90139 1.46051 1.31334 1.17718 1.40803 1.19172 1.02476 0.96359 1.17424 0.91171 1.25566 1.02469 0.96969 1.00610 1.69998 1.42163 1.10320 1.37328 0.85138 0.78915 0.77378 0.78293 1.21694 1.21200 1.19601 1.21459 0.87648 0.86698 0.75210 1.90715 1.17232 1.88061 1.51679 1.21329 0.98436 0.87929 1.07307 1.22915 0.98659 0.93464 0.98089 1.21531 0.97882 1.01360 0.94459 1.19291 0.95960 1.03733 0.91477 1.21672 0.89912 0.97322 1.02038 1.21630 1.00790 0.98872 0.92504 1.21502 0.95499 0.96260 0.97573 1.21385 0.93113 1.03598 0.99958 1.18284 0.79480 1.03412 0.93885 1.91446 1.39240 1.90877 1.91893 0.90707 0.89878 0.87755 0.89513 0.94341 0.88527 0.88892 0.93407 0.97298 0.94153 0.83754 0.85573 0.86831 0.86168 0.82174 0.81477 0.82089 0.83812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.93 10.23 127.77 1.31 2.23 16 2 N -0.61 -16.44 2.87 -846.75 -2.43 -18.87 16 3 C 0.13 4.83 5.35 86.38 0.46 5.29 16 4 C 0.14 5.66 4.31 41.79 0.18 5.84 16 5 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 6 C -0.12 -4.27 7.01 30.97 0.22 -4.06 16 7 C 0.14 6.65 7.52 83.22 0.63 7.27 16 8 N -0.63 -34.07 3.65 -713.26 -2.60 -36.67 16 9 C -0.23 -13.49 10.55 84.03 0.89 -12.61 16 10 H 0.07 4.19 7.83 -2.91 -0.02 4.17 16 11 C -0.06 -3.75 5.50 84.86 0.47 -3.29 16 12 N -0.95 -58.89 11.43 21.65 0.25 -58.64 16 13 Si 0.97 48.10 29.55 68.60 2.03 50.13 16 14 H -0.29 -14.22 7.11 99.48 0.71 -13.52 16 15 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 16 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 17 C 0.50 14.95 7.66 87.66 0.67 15.62 16 18 O -0.60 -25.23 15.59 -3.03 -0.05 -25.28 16 19 C -0.11 -2.00 3.13 29.10 0.09 -1.91 16 20 C -0.11 -2.44 8.71 24.53 0.21 -2.23 16 21 C -0.13 -2.83 9.45 23.64 0.22 -2.61 16 22 C -0.10 -1.92 5.17 -20.08 -0.10 -2.02 16 23 C -0.09 -1.02 7.30 22.52 0.16 -0.86 16 24 C -0.12 -0.90 10.03 22.24 0.22 -0.67 16 25 C -0.09 -0.82 10.04 22.31 0.22 -0.59 16 26 C -0.16 -2.37 10.01 22.28 0.22 -2.15 16 27 C 0.07 1.41 7.28 22.63 0.16 1.57 16 28 F -0.16 -3.94 16.83 44.97 0.76 -3.19 16 29 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.08 1.16 7.02 -2.39 -0.02 1.14 16 31 H 0.10 0.73 6.47 -2.39 -0.02 0.71 16 32 H 0.09 3.01 7.88 -2.39 -0.02 2.99 16 33 H 0.04 1.76 7.36 -2.39 -0.02 1.74 16 34 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 35 H 0.09 2.96 7.96 -2.39 -0.02 2.94 16 36 H 0.05 2.57 6.93 -2.39 -0.02 2.56 16 37 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.25 14.94 8.31 -92.70 -0.77 14.17 16 39 H 0.15 1.39 7.14 -2.39 -0.02 1.38 16 40 H 0.13 1.84 4.74 -2.38 -0.01 1.82 16 41 H 0.11 2.73 8.05 -2.91 -0.02 2.70 16 42 H 0.12 2.56 8.06 -2.91 -0.02 2.54 16 43 H 0.16 0.98 6.33 -2.91 -0.02 0.96 16 44 H 0.17 0.10 8.06 -2.91 -0.02 0.08 16 45 H 0.16 0.48 8.06 -2.91 -0.02 0.46 16 46 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 Total: -1.00 -84.65 381.30 5.17 -79.48 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: 0.98 Total: 8.20 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: 6.24 Total: 4.85 kcal Atomic # 7 Polarization: -109.40 SS G_CDS: -4.79 Total: -114.19 kcal Atomic # 8 Polarization: -25.23 SS G_CDS: -0.05 Total: -25.28 kcal Atomic # 9 Polarization: -3.94 SS G_CDS: 0.76 Total: -3.19 kcal Atomic # 14 Polarization: 48.10 SS G_CDS: 2.03 Total: 50.13 kcal Total: -84.65 5.17 -79.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235799049.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.336 kcal (2) G-P(sol) polarization free energy of solvation -84.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds