Wall clock time and date at job start Tue Mar 31 2020 17:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50697 * 119.99865 * 2 1 4 4 N 1.46507 * 109.47128 * 234.03834 * 3 2 1 5 5 C 1.36735 * 127.13424 * 83.78268 * 4 3 2 6 6 C 1.50697 * 126.34932 * 359.93580 * 5 4 3 7 7 C 1.50698 * 109.46810 * 90.00259 * 6 5 4 8 8 N 1.31139 * 126.54903 * 89.71450 * 7 6 5 9 9 C 1.34491 * 105.61533 * 179.91396 * 8 7 6 10 10 C 1.50700 * 126.28840 * 180.12427 * 9 8 7 11 11 N 1.29950 * 107.42546 * 0.35132 * 9 8 7 12 12 O 1.21305 * 110.25086 * 359.77489 * 11 9 8 13 13 N 1.30296 * 107.30037 * 179.97438 * 5 4 3 14 14 N 1.28521 * 110.05742 * 359.97438 * 13 5 4 15 15 C 1.31220 * 109.86216 * 359.74578 * 14 13 5 16 16 N 1.38575 * 126.47716 * 180.25963 * 15 14 13 17 17 C 1.46893 * 111.00075 * 257.96041 * 16 15 14 18 18 C 1.46902 * 110.99753 * 21.91589 * 16 15 14 19 19 H 1.09000 * 109.46667 * 299.99446 * 18 16 15 20 20 C 1.52995 * 109.47623 * 59.99868 * 18 16 15 21 21 C 1.50700 * 109.46892 * 180.02562 * 18 16 15 22 22 H 1.07999 * 120.00394 * 359.97438 * 21 18 16 23 23 C 1.37883 * 120.00119 * 179.97438 * 21 18 16 24 24 N 1.31506 * 120.00044 * 179.97438 * 23 21 18 25 25 Si 1.86796 * 119.99592 * 0.02562 * 23 21 18 26 26 H 1.48505 * 109.47419 * 89.99874 * 25 23 21 27 27 H 1.48502 * 109.47038 * 209.99689 * 25 23 21 28 28 H 1.48498 * 109.47354 * 329.99385 * 25 23 21 29 29 H 1.08001 * 119.99981 * 180.02562 * 1 2 3 30 30 H 1.07997 * 119.99808 * 359.97438 * 1 2 3 31 31 H 1.08005 * 120.00110 * 180.02562 * 2 1 3 32 32 H 1.08993 * 109.47626 * 354.03811 * 3 2 1 33 33 H 1.09001 * 109.47318 * 114.04322 * 3 2 1 34 34 H 1.08997 * 109.47383 * 210.00393 * 6 5 4 35 35 H 1.09000 * 109.47008 * 330.00496 * 6 5 4 36 36 H 1.08996 * 109.47293 * 270.23934 * 10 9 8 37 37 H 1.08992 * 109.46983 * 30.24712 * 10 9 8 38 38 H 1.09003 * 109.46590 * 150.24354 * 10 9 8 39 39 H 1.08998 * 109.47487 * 52.61156 * 17 16 15 40 40 H 1.09005 * 109.47533 * 172.61558 * 17 16 15 41 41 H 1.09004 * 109.46981 * 292.61076 * 17 16 15 42 42 H 1.09001 * 109.46923 * 59.99981 * 20 18 16 43 43 H 1.09002 * 109.46945 * 180.02562 * 20 18 16 44 44 H 1.08997 * 109.47113 * 300.00277 * 20 18 16 45 45 H 0.97002 * 120.00083 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0101 1.3225 -1.1180 5 6 2.7482 1.6629 -2.4162 6 6 1.4171 2.0947 -2.9752 7 6 1.2904 3.5927 -2.8705 8 7 1.6638 4.4726 -3.7682 9 6 1.3562 5.6739 -3.2475 10 6 1.5866 7.0135 -3.8982 11 7 0.8283 5.4675 -2.0781 12 8 0.7814 4.2785 -1.8426 13 7 3.8628 1.5439 -3.0804 14 7 4.8039 1.1550 -2.2962 15 6 4.3376 1.0090 -1.0784 16 7 5.0565 0.6084 0.0366 17 6 4.7954 -0.8022 0.3525 18 6 6.4937 0.8490 -0.1495 19 1 6.8472 0.2868 -1.0138 20 6 6.7355 2.3422 -0.3787 21 6 7.2412 0.4015 1.0802 22 1 6.7025 -0.0192 1.9164 23 6 8.6129 0.5290 1.1377 24 7 9.2651 0.1389 2.2109 25 14 9.5446 1.2571 -0.3084 26 1 9.6494 2.7288 -0.1393 27 1 10.9062 0.6674 -0.3675 28 1 8.8189 0.9540 -1.5680 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8501 -0.9353 -0.0004 32 1 1.3601 2.1308 -0.1067 33 1 2.6078 1.4104 0.9385 34 1 1.3483 1.7965 -4.0213 35 1 0.6146 1.6217 -2.4091 36 1 2.5743 7.3850 -3.6252 37 1 1.5250 6.9068 -4.9811 38 1 0.8270 7.7177 -3.5586 39 1 4.9628 -1.4106 -0.5362 40 1 5.4672 -1.1270 1.1471 41 1 3.7623 -0.9156 0.6812 42 1 6.3820 2.9044 0.4857 43 1 7.8019 2.5205 -0.5172 44 1 6.1949 2.6655 -1.2682 45 1 10.2301 0.2290 2.2515 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262953929.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:30 Heat of formation + Delta-G solvation = 199.859881 kcal Electronic energy + Delta-G solvation = -29296.924332 eV Core-core repulsion = 25356.460065 eV Total energy + Delta-G solvation = -3940.464268 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.82523 -42.82831 -37.48046 -36.38840 -36.32665 -34.55565 -33.02552 -32.62499 -31.22864 -30.23383 -29.42756 -28.07263 -26.84472 -25.44945 -24.53907 -23.89678 -22.47497 -21.92679 -21.04108 -20.14706 -19.50421 -18.41207 -17.74897 -17.28740 -16.70588 -16.39914 -15.48033 -15.32468 -15.26424 -14.77208 -14.52260 -14.31308 -14.05022 -13.85327 -13.65340 -13.36335 -13.26438 -13.06744 -12.75000 -12.56469 -12.27914 -12.20368 -11.90653 -11.75552 -11.63255 -11.34288 -11.25576 -11.15476 -10.76864 -10.70328 -10.36738 -10.19710 -10.12910 -10.05028 -9.86061 -9.54571 -9.46551 -8.90178 -8.64737 -7.80811 -6.16835 -4.18326 0.82587 1.65448 1.75434 2.02871 2.49541 2.62269 3.09709 3.27785 3.38957 3.40860 3.45351 3.77884 4.09489 4.24196 4.35987 4.45190 4.50481 4.59308 4.64933 4.97073 5.04400 5.10709 5.15147 5.16973 5.27308 5.31691 5.41573 5.51439 5.62191 5.64263 5.76613 5.86621 5.93813 6.07319 6.20909 6.25349 6.36897 6.41689 6.44540 6.59638 6.76203 6.89692 7.08786 7.39534 7.56420 7.83347 7.91217 8.45016 8.82650 9.00350 9.43588 10.94629 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.012832 B = 0.003841 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.543525 B = 7287.276282 C = 8648.923196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.174 4.174 3 C 0.133 3.867 4 N -0.470 5.470 5 C 0.137 3.863 6 C 0.075 3.925 7 C 0.185 3.815 8 N -0.461 5.461 9 C 0.169 3.831 10 C -0.063 4.063 11 N -0.384 5.384 12 O 0.076 5.924 13 N -0.256 5.256 14 N -0.318 5.318 15 C 0.393 3.607 16 N -0.452 5.452 17 C 0.036 3.964 18 C 0.199 3.801 19 H 0.026 0.974 20 C -0.148 4.148 21 C -0.519 4.519 22 H 0.086 0.914 23 C 0.079 3.921 24 N -0.893 5.893 25 Si 0.879 3.121 26 H -0.277 1.277 27 H -0.295 1.295 28 H -0.260 1.260 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.119 0.881 32 H 0.095 0.905 33 H 0.117 0.883 34 H 0.144 0.856 35 H 0.118 0.882 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.030 0.970 40 H 0.108 0.892 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.048 0.952 44 H 0.038 0.962 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.836 4.404 -7.875 23.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.193 4.193 3 C 0.011 3.989 4 N -0.165 5.165 5 C -0.130 4.130 6 C 0.034 3.966 7 C -0.038 4.038 8 N -0.195 5.195 9 C -0.104 4.104 10 C -0.121 4.121 11 N -0.092 5.092 12 O 0.017 5.983 13 N -0.097 5.097 14 N -0.163 5.163 15 C 0.038 3.962 16 N -0.177 5.177 17 C -0.111 4.111 18 C 0.093 3.907 19 H 0.044 0.956 20 C -0.205 4.205 21 C -0.557 4.557 22 H 0.104 0.896 23 C -0.124 4.124 24 N -0.530 5.530 25 Si 0.709 3.291 26 H -0.204 1.204 27 H -0.222 1.222 28 H -0.185 1.185 29 H 0.124 0.876 30 H 0.120 0.880 31 H 0.137 0.863 32 H 0.114 0.886 33 H 0.135 0.865 34 H 0.162 0.838 35 H 0.136 0.864 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.105 0.895 39 H 0.048 0.952 40 H 0.126 0.874 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.066 0.934 44 H 0.057 0.943 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -20.900 5.478 -8.370 23.170 hybrid contribution 0.055 -0.072 0.074 0.117 sum -20.844 5.406 -8.296 23.077 Atomic orbital electron populations 1.23959 0.95374 1.02613 0.98634 1.23211 0.96292 0.98307 1.01479 1.21014 0.91496 0.96765 0.89665 1.46212 1.09404 1.51639 1.09218 1.23611 0.97843 1.09458 0.82098 1.18198 0.91569 0.81162 1.05718 1.28470 0.93513 0.98596 0.83187 1.71952 1.20247 0.98476 1.28823 1.25965 0.97689 0.97217 0.89526 1.20156 1.03845 0.87120 1.01009 1.74628 1.21805 0.94601 1.18175 1.85271 1.60034 1.12709 1.40248 1.74008 0.95500 1.14232 1.25981 1.74848 1.22229 1.21400 0.97862 1.23101 0.81733 0.99165 0.92224 1.58894 1.11810 1.20449 1.26525 1.22487 1.01466 0.84949 1.02208 1.19756 0.79180 0.93464 0.98267 0.95608 1.22176 0.99991 0.98455 0.99899 1.20853 0.91596 1.42399 1.00808 0.89596 1.24805 0.97283 0.94667 0.95647 1.69851 1.08534 1.46989 1.27676 0.86959 0.78862 0.79112 0.84164 1.20436 1.22222 1.18465 0.87562 0.87993 0.86331 0.88641 0.86509 0.83837 0.86382 0.89193 0.88869 0.89500 0.95169 0.87374 0.92820 0.92780 0.93377 0.94333 0.92342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.05 14.32 29.01 0.42 -0.63 16 2 C -0.17 -1.50 9.48 -36.03 -0.34 -1.84 16 3 C 0.13 1.42 6.20 -5.19 -0.03 1.39 16 4 N -0.47 -6.90 2.79 -115.37 -0.32 -7.22 16 5 C 0.14 1.98 7.30 -154.02 -1.12 0.86 16 6 C 0.07 0.71 6.17 -29.04 -0.18 0.53 16 7 C 0.18 2.15 7.75 -13.05 -0.10 2.05 16 8 N -0.46 -6.15 11.55 -9.86 -0.11 -6.27 16 9 C 0.17 2.07 8.22 -156.37 -1.28 0.79 16 10 C -0.06 -0.52 10.51 36.01 0.38 -0.14 16 11 N -0.38 -5.01 12.16 30.90 0.38 -4.63 16 12 O 0.08 0.91 11.31 18.10 0.20 1.12 16 13 N -0.26 -4.79 12.18 32.99 0.40 -4.39 16 14 N -0.32 -6.74 10.10 30.31 0.31 -6.44 16 15 C 0.39 7.48 5.98 -318.88 -1.91 5.57 16 16 N -0.45 -9.15 4.61 -176.09 -0.81 -9.96 16 17 C 0.04 0.63 9.41 60.06 0.57 1.19 16 18 C 0.20 4.77 1.32 -68.87 -0.09 4.68 16 19 H 0.03 0.68 6.96 -51.93 -0.36 0.31 16 20 C -0.15 -3.51 8.50 37.15 0.32 -3.19 16 21 C -0.52 -13.91 8.36 -34.44 -0.29 -14.20 16 22 H 0.09 2.41 6.71 -52.49 -0.35 2.06 16 23 C 0.08 2.22 5.45 -17.82 -0.10 2.13 16 24 N -0.89 -26.39 13.96 55.43 0.77 -25.61 16 25 Si 0.88 22.10 24.37 -169.99 -4.14 17.96 16 26 H -0.28 -6.87 6.87 56.52 0.39 -6.48 16 27 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 28 H -0.26 -6.52 6.53 56.52 0.37 -6.15 16 29 H 0.11 0.55 8.06 -52.49 -0.42 0.13 16 30 H 0.10 0.50 7.84 -52.49 -0.41 0.09 16 31 H 0.12 1.13 6.83 -52.48 -0.36 0.77 16 32 H 0.10 0.82 7.74 -51.93 -0.40 0.42 16 33 H 0.12 1.37 8.08 -51.93 -0.42 0.95 16 34 H 0.14 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.12 0.68 7.97 -51.93 -0.41 0.27 16 36 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.03 0.53 8.09 -51.93 -0.42 0.11 16 40 H 0.11 2.08 5.90 -51.93 -0.31 1.77 16 41 H 0.05 0.75 6.40 -51.93 -0.33 0.42 16 42 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.05 1.18 3.27 -51.93 -0.17 1.01 16 44 H 0.04 0.89 6.28 -51.93 -0.33 0.57 16 45 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 371.66 15.07 5.60 5.60 Total: -1.00 -34.60 371.66 -7.49 -42.09 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -5.99 Total: -1.43 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: -3.77 Total: -0.81 kcal Atomic # 7 Polarization: -65.13 SS G_CDS: 0.61 Total: -64.52 kcal Atomic # 8 Polarization: 0.91 SS G_CDS: 0.20 Total: 1.12 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.14 Total: 17.96 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.60 -7.49 -42.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262953929.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 241.951 kcal (2) G-P(sol) polarization free energy of solvation -34.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 207.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 199.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds