Wall clock time and date at job start Tue Mar 31 2020 17:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50697 * 119.99865 * 2 1 4 4 N 1.46507 * 109.47128 * 234.03834 * 3 2 1 5 5 C 1.36735 * 127.13424 * 83.78268 * 4 3 2 6 6 C 1.50697 * 126.34932 * 359.93580 * 5 4 3 7 7 C 1.50698 * 109.46810 * 90.00259 * 6 5 4 8 8 N 1.31139 * 126.54903 * 89.71450 * 7 6 5 9 9 C 1.34491 * 105.61533 * 179.91396 * 8 7 6 10 10 C 1.50700 * 126.28840 * 180.12427 * 9 8 7 11 11 N 1.29950 * 107.42546 * 0.35132 * 9 8 7 12 12 O 1.21305 * 110.25086 * 359.77489 * 11 9 8 13 13 N 1.30296 * 107.30037 * 179.97438 * 5 4 3 14 14 N 1.28521 * 110.05742 * 359.97438 * 13 5 4 15 15 C 1.31220 * 109.86216 * 359.74578 * 14 13 5 16 16 N 1.38575 * 126.47716 * 180.25963 * 15 14 13 17 17 C 1.46893 * 111.00075 * 257.96041 * 16 15 14 18 18 C 1.46902 * 110.99753 * 21.91589 * 16 15 14 19 19 H 1.09000 * 109.46667 * 299.99446 * 18 16 15 20 20 C 1.52995 * 109.47623 * 59.99868 * 18 16 15 21 21 C 1.50700 * 109.46892 * 180.02562 * 18 16 15 22 22 H 1.07999 * 120.00394 * 359.97438 * 21 18 16 23 23 C 1.37883 * 120.00119 * 179.97438 * 21 18 16 24 24 N 1.31506 * 120.00044 * 179.97438 * 23 21 18 25 25 Si 1.86796 * 119.99592 * 0.02562 * 23 21 18 26 26 H 1.48505 * 109.47419 * 89.99874 * 25 23 21 27 27 H 1.48502 * 109.47038 * 209.99689 * 25 23 21 28 28 H 1.48498 * 109.47354 * 329.99385 * 25 23 21 29 29 H 1.08001 * 119.99981 * 180.02562 * 1 2 3 30 30 H 1.07997 * 119.99808 * 359.97438 * 1 2 3 31 31 H 1.08005 * 120.00110 * 180.02562 * 2 1 3 32 32 H 1.08993 * 109.47626 * 354.03811 * 3 2 1 33 33 H 1.09001 * 109.47318 * 114.04322 * 3 2 1 34 34 H 1.08997 * 109.47383 * 210.00393 * 6 5 4 35 35 H 1.09000 * 109.47008 * 330.00496 * 6 5 4 36 36 H 1.08996 * 109.47293 * 270.23934 * 10 9 8 37 37 H 1.08992 * 109.46983 * 30.24712 * 10 9 8 38 38 H 1.09003 * 109.46590 * 150.24354 * 10 9 8 39 39 H 1.08998 * 109.47487 * 52.61156 * 17 16 15 40 40 H 1.09005 * 109.47533 * 172.61558 * 17 16 15 41 41 H 1.09004 * 109.46981 * 292.61076 * 17 16 15 42 42 H 1.09001 * 109.46923 * 59.99981 * 20 18 16 43 43 H 1.09002 * 109.46945 * 180.02562 * 20 18 16 44 44 H 1.08997 * 109.47113 * 300.00277 * 20 18 16 45 45 H 0.97002 * 120.00083 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0101 1.3225 -1.1180 5 6 2.7482 1.6629 -2.4162 6 6 1.4171 2.0947 -2.9752 7 6 1.2904 3.5927 -2.8705 8 7 1.6638 4.4726 -3.7682 9 6 1.3562 5.6739 -3.2475 10 6 1.5866 7.0135 -3.8982 11 7 0.8283 5.4675 -2.0781 12 8 0.7814 4.2785 -1.8426 13 7 3.8628 1.5439 -3.0804 14 7 4.8039 1.1550 -2.2962 15 6 4.3376 1.0090 -1.0784 16 7 5.0565 0.6084 0.0366 17 6 4.7954 -0.8022 0.3525 18 6 6.4937 0.8490 -0.1495 19 1 6.8472 0.2868 -1.0138 20 6 6.7355 2.3422 -0.3787 21 6 7.2412 0.4015 1.0802 22 1 6.7025 -0.0192 1.9164 23 6 8.6129 0.5290 1.1377 24 7 9.2651 0.1389 2.2109 25 14 9.5446 1.2571 -0.3084 26 1 9.6494 2.7288 -0.1393 27 1 10.9062 0.6674 -0.3675 28 1 8.8189 0.9540 -1.5680 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8501 -0.9353 -0.0004 32 1 1.3601 2.1308 -0.1067 33 1 2.6078 1.4104 0.9385 34 1 1.3483 1.7965 -4.0213 35 1 0.6146 1.6217 -2.4091 36 1 2.5743 7.3850 -3.6252 37 1 1.5250 6.9068 -4.9811 38 1 0.8270 7.7177 -3.5586 39 1 4.9628 -1.4106 -0.5362 40 1 5.4672 -1.1270 1.1471 41 1 3.7623 -0.9156 0.6812 42 1 6.3820 2.9044 0.4857 43 1 7.8019 2.5205 -0.5172 44 1 6.1949 2.6655 -1.2682 45 1 10.2301 0.2290 2.2515 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262953929.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:28 Heat of formation + Delta-G solvation = 176.232567 kcal Electronic energy + Delta-G solvation = -29297.948889 eV Core-core repulsion = 25356.460065 eV Total energy + Delta-G solvation = -3941.488825 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -46.73694 -44.12487 -39.12319 -37.32658 -37.23073 -35.53049 -34.80994 -33.70728 -32.49980 -31.91764 -30.22983 -29.29317 -27.74253 -27.25429 -26.20464 -24.83005 -23.86974 -23.10834 -22.02783 -21.30657 -20.69318 -19.34716 -19.04963 -18.66247 -18.06815 -17.67605 -17.04986 -16.81840 -16.32538 -15.89525 -15.58489 -15.48951 -15.13881 -15.07460 -14.72610 -14.52645 -14.45856 -14.15094 -14.03248 -13.74196 -13.62727 -13.34774 -13.06674 -12.99224 -12.82769 -12.66916 -12.57228 -12.45987 -12.32282 -12.19370 -12.16759 -11.68882 -11.54821 -11.30598 -11.13218 -11.05286 -10.80558 -10.53495 -10.46849 -9.36207 -8.35637 -6.38970 -0.08847 0.58453 0.89202 1.11596 1.25177 1.33204 1.43269 1.51647 1.60373 1.88505 2.26163 2.60028 2.79666 2.97223 3.00236 3.15303 3.59551 3.81516 3.84137 3.85038 3.92066 4.24586 4.29174 4.37797 4.40277 4.45367 4.49543 4.50734 4.52522 4.59388 4.61851 4.64923 4.74543 4.85238 4.89428 4.93858 5.02072 5.04589 5.07080 5.21240 5.41041 5.53471 5.65299 5.71868 5.78337 6.11285 6.48416 6.64995 7.02560 7.25255 7.66956 8.78950 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.012832 B = 0.003841 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.543525 B = 7287.276282 C = 8648.923196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.202 4.202 3 C 0.128 3.872 4 N -0.459 5.459 5 C 0.167 3.833 6 C 0.078 3.922 7 C 0.188 3.812 8 N -0.488 5.488 9 C 0.160 3.840 10 C -0.064 4.064 11 N -0.402 5.402 12 O 0.079 5.921 13 N -0.299 5.299 14 N -0.361 5.361 15 C 0.374 3.626 16 N -0.454 5.454 17 C 0.041 3.959 18 C 0.209 3.791 19 H 0.004 0.996 20 C -0.138 4.138 21 C -0.511 4.511 22 H 0.066 0.934 23 C 0.035 3.965 24 N -0.932 5.932 25 Si 0.927 3.073 26 H -0.269 1.269 27 H -0.290 1.290 28 H -0.263 1.263 29 H 0.121 0.879 30 H 0.124 0.876 31 H 0.105 0.895 32 H 0.123 0.877 33 H 0.102 0.898 34 H 0.164 0.836 35 H 0.165 0.835 36 H 0.093 0.907 37 H 0.105 0.895 38 H 0.103 0.897 39 H 0.024 0.976 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.054 0.946 43 H 0.040 0.960 44 H 0.040 0.960 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.105 5.114 -8.737 27.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.221 4.221 3 C 0.007 3.993 4 N -0.153 5.153 5 C -0.103 4.103 6 C 0.037 3.963 7 C -0.034 4.034 8 N -0.222 5.222 9 C -0.113 4.113 10 C -0.122 4.122 11 N -0.112 5.112 12 O 0.021 5.979 13 N -0.139 5.139 14 N -0.206 5.206 15 C 0.017 3.983 16 N -0.178 5.178 17 C -0.106 4.106 18 C 0.102 3.898 19 H 0.022 0.978 20 C -0.195 4.195 21 C -0.549 4.549 22 H 0.084 0.916 23 C -0.165 4.165 24 N -0.571 5.571 25 Si 0.756 3.244 26 H -0.196 1.196 27 H -0.217 1.217 28 H -0.188 1.188 29 H 0.139 0.861 30 H 0.142 0.858 31 H 0.123 0.877 32 H 0.141 0.859 33 H 0.120 0.880 34 H 0.182 0.818 35 H 0.182 0.818 36 H 0.111 0.889 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.043 0.957 40 H 0.105 0.895 41 H 0.109 0.891 42 H 0.073 0.927 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -24.206 6.187 -9.228 26.633 hybrid contribution 0.836 -0.311 0.347 0.957 sum -23.370 5.876 -8.881 25.682 Atomic orbital electron populations 1.24248 0.94281 1.04379 0.94041 1.22936 0.97006 0.96531 1.05608 1.21335 0.91083 0.99179 0.87653 1.46431 1.08329 1.50167 1.10332 1.24429 0.98464 1.05879 0.81492 1.18626 0.89995 0.80058 1.07573 1.28729 0.92831 0.99069 0.82805 1.71974 1.21029 0.99302 1.29915 1.26634 0.96999 0.98260 0.89380 1.20352 1.04544 0.85715 1.01617 1.74615 1.22730 0.95093 1.18714 1.85239 1.60006 1.12488 1.40146 1.73919 0.96633 1.16645 1.26696 1.74708 1.24238 1.22599 0.99055 1.22834 0.83454 1.00644 0.91401 1.58784 1.09735 1.21769 1.27511 1.22472 1.03161 0.83779 1.01146 1.19387 0.81561 0.93174 0.95709 0.97826 1.22041 0.99391 0.98146 0.99958 1.21032 0.91700 1.41101 1.01056 0.91612 1.25416 0.98269 0.95322 0.97503 1.69944 1.08948 1.48817 1.29406 0.86171 0.77867 0.78887 0.81512 1.19568 1.21689 1.18762 0.86069 0.85809 0.87692 0.85939 0.87964 0.81794 0.81785 0.88883 0.87605 0.87791 0.95732 0.89527 0.89064 0.92715 0.94190 0.94103 0.92136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.99 14.32 67.78 0.97 -0.02 16 2 C -0.20 -2.82 9.48 25.64 0.24 -2.58 16 3 C 0.13 2.40 6.20 85.63 0.53 2.93 16 4 N -0.46 -12.70 2.79 -518.91 -1.45 -14.15 16 5 C 0.17 4.46 7.30 137.64 1.01 5.46 16 6 C 0.08 1.18 6.17 29.10 0.18 1.36 16 7 C 0.19 3.85 7.75 88.38 0.68 4.54 16 8 N -0.49 -12.07 11.55 -303.16 -3.50 -15.57 16 9 C 0.16 3.64 8.22 138.46 1.14 4.77 16 10 C -0.06 -0.94 10.51 71.24 0.75 -0.19 16 11 N -0.40 -9.67 12.16 -60.29 -0.73 -10.41 16 12 O 0.08 1.68 11.31 74.83 0.85 2.52 16 13 N -0.30 -11.01 12.18 -49.54 -0.60 -11.61 16 14 N -0.36 -15.41 10.10 -58.00 -0.59 -16.00 16 15 C 0.37 14.16 5.98 260.11 1.56 15.71 16 16 N -0.45 -18.59 4.61 -711.01 -3.28 -21.86 16 17 C 0.04 1.46 9.41 127.69 1.20 2.66 16 18 C 0.21 10.23 1.32 44.17 0.06 10.29 16 19 H 0.00 0.22 6.96 -2.39 -0.02 0.20 16 20 C -0.14 -6.60 8.50 71.98 0.61 -5.99 16 21 C -0.51 -28.16 8.36 25.60 0.21 -27.95 16 22 H 0.07 3.84 6.71 -2.91 -0.02 3.82 16 23 C 0.03 1.98 5.45 84.66 0.46 2.44 16 24 N -0.93 -56.26 13.96 21.45 0.30 -55.96 16 25 Si 0.93 46.26 24.37 68.60 1.67 47.94 16 26 H -0.27 -12.99 6.87 99.48 0.68 -12.31 16 27 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 28 H -0.26 -13.15 6.53 99.48 0.65 -12.50 16 29 H 0.12 0.64 8.06 -2.91 -0.02 0.62 16 30 H 0.12 0.45 7.84 -2.91 -0.02 0.42 16 31 H 0.11 1.77 6.83 -2.91 -0.02 1.75 16 32 H 0.12 1.61 7.74 -2.39 -0.02 1.59 16 33 H 0.10 2.24 8.08 -2.39 -0.02 2.22 16 34 H 0.16 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.16 0.98 7.97 -2.39 -0.02 0.96 16 36 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.02 0.88 8.09 -2.39 -0.02 0.86 16 40 H 0.09 3.45 5.90 -2.38 -0.01 3.44 16 41 H 0.09 2.51 6.40 -2.38 -0.02 2.50 16 42 H 0.05 2.55 8.14 -2.39 -0.02 2.53 16 43 H 0.04 1.95 3.27 -2.39 -0.01 1.94 16 44 H 0.04 1.92 6.28 -2.39 -0.02 1.90 16 45 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -78.24 371.66 3.21 -75.02 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: 0.94 Total: 6.63 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: 9.60 Total: 13.44 kcal Atomic # 7 Polarization: -135.70 SS G_CDS: -9.85 Total: -145.55 kcal Atomic # 8 Polarization: 1.68 SS G_CDS: 0.85 Total: 2.52 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 1.67 Total: 47.94 kcal Total: -78.24 3.21 -75.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262953929.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 251.254 kcal (2) G-P(sol) polarization free energy of solvation -78.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 173.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 176.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds