Wall clock time and date at job start Tue Mar 31 2020 17:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50704 * 119.99797 * 2 1 4 4 N 1.46499 * 109.46983 * 123.51019 * 3 2 1 5 5 C 1.36736 * 127.13679 * 88.76902 * 4 3 2 6 6 C 1.50694 * 126.34932 * 359.97438 * 5 4 3 7 7 C 1.50698 * 109.47278 * 89.99827 * 6 5 4 8 8 N 1.31135 * 126.54877 * 90.30142 * 7 6 5 9 9 C 1.34492 * 105.61003 * 180.12189 * 8 7 6 10 10 C 1.50706 * 126.28374 * 179.90307 * 9 8 7 11 11 N 1.29942 * 107.42638 * 359.64106 * 9 8 7 12 12 O 1.21293 * 110.25536 * 0.22506 * 11 9 8 13 13 N 1.30295 * 107.30175 * 180.23759 * 5 4 3 14 14 N 1.28533 * 110.05507 * 359.56372 * 13 5 4 15 15 C 1.31217 * 109.85553 * 0.44709 * 14 13 5 16 16 N 1.38585 * 126.46737 * 179.69584 * 15 14 13 17 17 C 1.46902 * 111.00302 * 306.19973 * 16 15 14 18 18 C 1.46901 * 110.99947 * 70.15441 * 16 15 14 19 19 H 1.09004 * 109.47126 * 54.99786 * 18 16 15 20 20 C 1.52997 * 109.47148 * 294.99552 * 18 16 15 21 21 C 1.50697 * 109.47124 * 174.99572 * 18 16 15 22 22 H 1.08007 * 120.00081 * 359.97438 * 21 18 16 23 23 C 1.37872 * 120.00237 * 180.02562 * 21 18 16 24 24 N 1.31518 * 119.99921 * 0.02562 * 23 21 18 25 25 Si 1.86803 * 120.00373 * 180.02562 * 23 21 18 26 26 H 1.48503 * 109.46813 * 60.00039 * 25 23 21 27 27 H 1.48497 * 109.47152 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.47019 * 300.00130 * 25 23 21 29 29 H 1.08004 * 119.99752 * 180.02562 * 1 2 3 30 30 H 1.08000 * 120.00280 * 0.02562 * 1 2 3 31 31 H 1.07993 * 120.00284 * 180.02562 * 2 1 3 32 32 H 1.08998 * 109.46771 * 3.50716 * 3 2 1 33 33 H 1.09000 * 109.46608 * 243.50780 * 3 2 1 34 34 H 1.09005 * 109.46826 * 329.99653 * 6 5 4 35 35 H 1.09005 * 109.47030 * 210.00020 * 6 5 4 36 36 H 1.08997 * 109.46914 * 269.71275 * 10 9 8 37 37 H 1.09001 * 109.47151 * 29.71704 * 10 9 8 38 38 H 1.09002 * 109.46433 * 149.71104 * 10 9 8 39 39 H 1.09000 * 109.46736 * 54.43827 * 17 16 15 40 40 H 1.08995 * 109.47017 * 174.44180 * 17 16 15 41 41 H 1.09002 * 109.46465 * 294.43966 * 17 16 15 42 42 H 1.08990 * 109.47471 * 299.99983 * 20 18 16 43 43 H 1.09010 * 109.46927 * 60.00152 * 20 18 16 44 44 H 1.08995 * 109.47018 * 179.97438 * 20 18 16 45 45 H 0.97000 * 120.00196 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9681 1.3468 1.1516 5 6 4.2574 0.8947 1.2054 6 6 5.0261 0.2517 0.0800 7 6 5.7475 1.3149 -0.7074 8 7 6.9613 1.7604 -0.4884 9 6 7.1784 2.6967 -1.4291 10 6 8.4343 3.5112 -1.6036 11 7 6.1085 2.7661 -2.1633 12 8 5.2745 1.9804 -1.7655 13 7 4.6962 1.1178 2.4118 14 7 3.7820 1.6840 3.1157 15 6 2.6988 1.8453 2.3929 16 7 1.5062 2.4138 2.8116 17 6 1.0074 1.7561 4.0268 18 6 1.6571 3.8601 3.0199 19 1 2.0452 4.3196 2.1109 20 6 2.6303 4.1104 4.1736 21 6 0.3165 4.4620 3.3540 22 1 -0.5600 3.8330 3.4060 23 6 0.2087 5.8157 3.5924 24 7 1.2758 6.5818 3.5276 25 14 -1.4529 6.5617 4.0072 26 1 -1.9808 5.9361 5.2463 27 1 -1.3004 8.0237 4.2177 28 1 -2.3981 6.3180 2.8882 29 1 -0.5400 -0.9354 0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8501 -0.9352 -0.0004 32 1 1.3568 2.1326 0.0629 33 1 2.6422 1.3905 -0.9198 34 1 4.3353 -0.2796 -0.5748 35 1 5.7510 -0.4514 0.4904 36 1 8.3558 4.4292 -1.0213 37 1 9.2924 2.9343 -1.2587 38 1 8.5630 3.7590 -2.6573 39 1 1.7821 1.7736 4.7934 40 1 0.1253 2.2836 4.3893 41 1 0.7450 0.7229 3.7989 42 1 2.2422 3.6510 5.0825 43 1 3.6000 3.6750 3.9319 44 1 2.7426 5.1835 4.3278 45 1 1.2000 7.5341 3.6957 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262953930.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:34 Heat of formation + Delta-G solvation = 170.653971 kcal Electronic energy + Delta-G solvation = -29293.057111 eV Core-core repulsion = 25351.326380 eV Total energy + Delta-G solvation = -3941.730731 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -46.74580 -44.06829 -39.06560 -37.26511 -37.18473 -35.54652 -34.78650 -33.64733 -32.28547 -30.78993 -30.18458 -28.94137 -27.79167 -27.25756 -26.88467 -24.85695 -23.35867 -23.27226 -21.93495 -21.30117 -20.78460 -19.34347 -18.68248 -18.41615 -18.00355 -17.50953 -17.12763 -16.58588 -16.22277 -16.07184 -15.59822 -15.16313 -15.07316 -14.87566 -14.53647 -14.51109 -14.22816 -14.03177 -13.67691 -13.40419 -13.39312 -13.11409 -13.08154 -12.97163 -12.69533 -12.65245 -12.55636 -12.45658 -12.34833 -12.19143 -12.09951 -12.06338 -11.59650 -11.11472 -11.07240 -10.93758 -10.54593 -10.45782 -10.13779 -9.48589 -8.15706 -6.29798 -0.09109 0.58660 0.93690 1.11233 1.44935 1.46987 1.53115 1.55297 1.67963 1.90249 2.41196 2.60163 2.96923 3.00931 3.14675 3.19496 3.58652 3.82890 3.87371 3.96283 4.12706 4.23466 4.33284 4.41047 4.51572 4.53287 4.56820 4.62036 4.65934 4.71433 4.76563 4.84571 4.91575 5.00528 5.02571 5.03789 5.07595 5.09337 5.36300 5.58281 5.59352 5.64924 5.75897 5.82431 5.97225 6.17628 6.59366 6.80040 7.01705 7.39749 7.66729 8.91059 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.011737 B = 0.003787 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.977136 B = 7391.585124 C = 8308.480443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.188 4.188 3 C 0.130 3.870 4 N -0.454 5.454 5 C 0.165 3.835 6 C 0.076 3.924 7 C 0.186 3.814 8 N -0.487 5.487 9 C 0.159 3.841 10 C -0.064 4.064 11 N -0.405 5.405 12 O 0.076 5.924 13 N -0.303 5.303 14 N -0.345 5.345 15 C 0.367 3.633 16 N -0.463 5.463 17 C 0.052 3.948 18 C 0.237 3.763 19 H -0.007 1.007 20 C -0.154 4.154 21 C -0.516 4.516 22 H 0.074 0.926 23 C 0.013 3.987 24 N -0.923 5.923 25 Si 0.968 3.032 26 H -0.266 1.266 27 H -0.290 1.290 28 H -0.267 1.267 29 H 0.125 0.875 30 H 0.093 0.907 31 H 0.137 0.863 32 H 0.088 0.912 33 H 0.123 0.877 34 H 0.169 0.831 35 H 0.169 0.831 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.104 0.896 39 H 0.026 0.974 40 H 0.086 0.914 41 H 0.073 0.927 42 H 0.035 0.965 43 H 0.026 0.974 44 H 0.058 0.942 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.698 -15.391 -12.661 20.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.206 4.206 3 C 0.010 3.990 4 N -0.146 5.146 5 C -0.104 4.104 6 C 0.036 3.964 7 C -0.036 4.036 8 N -0.221 5.221 9 C -0.113 4.113 10 C -0.122 4.122 11 N -0.114 5.114 12 O 0.019 5.981 13 N -0.144 5.144 14 N -0.189 5.189 15 C 0.010 3.990 16 N -0.188 5.188 17 C -0.096 4.096 18 C 0.131 3.869 19 H 0.011 0.989 20 C -0.214 4.214 21 C -0.555 4.555 22 H 0.092 0.908 23 C -0.186 4.186 24 N -0.562 5.562 25 Si 0.793 3.207 26 H -0.191 1.191 27 H -0.216 1.216 28 H -0.192 1.192 29 H 0.143 0.857 30 H 0.111 0.889 31 H 0.155 0.845 32 H 0.106 0.894 33 H 0.141 0.859 34 H 0.187 0.813 35 H 0.186 0.814 36 H 0.110 0.890 37 H 0.126 0.874 38 H 0.122 0.878 39 H 0.045 0.955 40 H 0.105 0.895 41 H 0.091 0.909 42 H 0.054 0.946 43 H 0.045 0.955 44 H 0.077 0.923 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.644 -14.647 -12.339 19.966 hybrid contribution -1.042 1.207 0.098 1.598 sum 4.602 -13.440 -12.241 18.752 Atomic orbital electron populations 1.24168 0.95707 1.03181 0.95144 1.22964 0.96489 0.96768 1.04395 1.21252 0.92655 0.99253 0.85879 1.46581 1.12309 1.44115 1.11575 1.24508 0.83735 1.04773 0.97421 1.18712 0.98811 0.89713 0.89154 1.28826 0.89753 0.96471 0.88538 1.71961 1.14876 1.12107 1.23191 1.26666 0.98512 0.96777 0.89388 1.20359 0.88633 0.97990 1.05194 1.74608 1.01472 1.11770 1.23560 1.85241 1.37516 1.37699 1.37684 1.73922 1.23542 1.14859 1.02107 1.74698 0.98659 1.18457 1.27135 1.22859 0.93311 0.98482 0.84339 1.59294 1.18775 1.05601 1.35140 1.22229 1.00173 0.98320 0.88844 1.19022 0.95715 0.79593 0.92573 0.98891 1.22228 0.97656 1.02102 0.99404 1.21226 0.93378 0.93100 1.47769 0.90757 1.25771 1.00357 0.97477 0.94980 1.70059 1.30474 1.05653 1.50025 0.85456 0.79345 0.76774 0.79157 1.19126 1.21570 1.19174 0.85667 0.88881 0.84497 0.89359 0.85948 0.81305 0.81383 0.89025 0.87385 0.87760 0.95502 0.89534 0.90876 0.94614 0.95501 0.92273 0.92880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 14.32 67.78 0.97 -1.52 16 2 C -0.19 -3.30 9.85 25.64 0.25 -3.05 16 3 C 0.13 3.06 6.32 85.63 0.54 3.60 16 4 N -0.45 -14.21 2.79 -518.92 -1.45 -15.66 16 5 C 0.16 4.80 7.30 137.64 1.01 5.81 16 6 C 0.08 1.31 6.07 29.10 0.18 1.48 16 7 C 0.19 4.39 7.75 88.38 0.68 5.08 16 8 N -0.49 -13.42 11.55 -303.21 -3.50 -16.92 16 9 C 0.16 4.14 8.22 138.47 1.14 5.27 16 10 C -0.06 -1.11 10.51 71.24 0.75 -0.36 16 11 N -0.40 -11.28 12.16 -60.35 -0.73 -12.01 16 12 O 0.08 1.92 11.31 74.84 0.85 2.76 16 13 N -0.30 -11.70 12.18 -49.54 -0.60 -12.31 16 14 N -0.35 -15.17 9.71 -58.01 -0.56 -15.73 16 15 C 0.37 14.87 6.21 260.11 1.62 16.49 16 16 N -0.46 -19.75 4.77 -711.00 -3.39 -23.15 16 17 C 0.05 1.99 8.66 127.69 1.11 3.09 16 18 C 0.24 12.22 2.31 44.17 0.10 12.32 16 19 H -0.01 -0.40 8.11 -2.39 -0.02 -0.42 16 20 C -0.15 -8.20 8.20 71.98 0.59 -7.61 16 21 C -0.52 -27.23 7.80 25.60 0.20 -27.03 16 22 H 0.07 3.73 6.82 -2.91 -0.02 3.71 16 23 C 0.01 0.72 5.30 84.65 0.45 1.16 16 24 N -0.92 -53.40 11.32 21.45 0.24 -53.16 16 25 Si 0.97 42.23 29.54 68.60 2.03 44.25 16 26 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 27 H -0.29 -12.68 7.11 99.48 0.71 -11.98 16 28 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 29 H 0.13 1.59 8.06 -2.91 -0.02 1.57 16 30 H 0.09 1.88 7.84 -2.91 -0.02 1.85 16 31 H 0.14 1.75 8.06 -2.91 -0.02 1.72 16 32 H 0.09 2.53 7.79 -2.39 -0.02 2.51 16 33 H 0.12 2.16 7.96 -2.39 -0.02 2.14 16 34 H 0.17 1.21 7.98 -2.38 -0.02 1.19 16 35 H 0.17 2.16 8.14 -2.38 -0.02 2.14 16 36 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.03 1.09 6.56 -2.39 -0.02 1.08 16 40 H 0.09 3.39 6.29 -2.39 -0.02 3.37 16 41 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 42 H 0.03 1.81 6.60 -2.39 -0.02 1.79 16 43 H 0.03 1.42 5.93 -2.38 -0.01 1.40 16 44 H 0.06 3.44 6.07 -2.39 -0.01 3.43 16 45 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -75.51 378.55 3.46 -72.05 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: 1.01 Total: 15.12 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: 9.58 Total: 14.75 kcal Atomic # 7 Polarization: -138.93 SS G_CDS: -10.00 Total: -148.94 kcal Atomic # 8 Polarization: 1.92 SS G_CDS: 0.85 Total: 2.76 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.25 kcal Total: -75.51 3.46 -72.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262953930.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 242.699 kcal (2) G-P(sol) polarization free energy of solvation -75.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 167.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 170.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds