Wall clock time and date at job start Tue Mar 31 2020 18:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50703 * 120.00005 * 2 1 4 4 N 1.46505 * 109.46756 * 125.97885 * 3 2 1 5 5 C 1.37532 * 127.16558 * 84.46316 * 4 3 2 6 6 C 1.47903 * 126.47650 * 359.97438 * 5 4 3 7 7 C 1.40964 * 125.97408 * 180.02562 * 6 5 4 8 8 C 1.35669 * 107.79418 * 179.97438 * 7 6 5 9 9 O 1.35762 * 126.09846 * 179.97438 * 8 7 6 10 10 N 1.35782 * 107.80159 * 359.97438 * 8 7 6 11 11 C 1.46501 * 125.95405 * 180.02562 * 10 8 7 12 12 N 1.31771 * 125.96610 * 359.68707 * 6 5 4 13 13 N 1.31239 * 107.05325 * 179.97438 * 5 4 3 14 14 N 1.28514 * 109.94500 * 0.02562 * 13 5 4 15 15 C 1.31324 * 110.08772 * 359.74014 * 14 13 5 16 16 N 1.38458 * 126.37846 * 180.25605 * 15 14 13 17 17 C 1.46895 * 111.00085 * 248.56694 * 16 15 14 18 18 C 1.46899 * 110.99850 * 12.51705 * 16 15 14 19 19 H 1.08998 * 109.47133 * 55.00075 * 18 16 15 20 20 C 1.53003 * 109.46993 * 295.00109 * 18 16 15 21 21 C 1.50698 * 109.47296 * 175.00247 * 18 16 15 22 22 H 1.07994 * 119.99969 * 359.97438 * 21 18 16 23 23 C 1.37877 * 120.00194 * 180.02562 * 21 18 16 24 24 N 1.31517 * 119.99775 * 359.97438 * 23 21 18 25 25 Si 1.86797 * 120.00175 * 179.97438 * 23 21 18 26 26 H 1.48500 * 109.47304 * 59.99610 * 25 23 21 27 27 H 1.48502 * 109.47364 * 180.02562 * 25 23 21 28 28 H 1.48509 * 109.47015 * 299.99935 * 25 23 21 29 29 H 1.07998 * 119.99702 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.00066 * 179.72310 * 1 2 3 31 31 H 1.07998 * 119.99595 * 180.02562 * 2 1 3 32 32 H 1.09000 * 109.47091 * 245.97867 * 3 2 1 33 33 H 1.09006 * 109.46918 * 5.98061 * 3 2 1 34 34 H 1.08003 * 126.10074 * 359.97438 * 7 6 5 35 35 H 0.96696 * 113.99619 * 89.97140 * 9 8 7 36 36 H 1.09000 * 109.47719 * 89.99464 * 11 10 8 37 37 H 1.09000 * 109.47647 * 209.99877 * 11 10 8 38 38 H 1.08999 * 109.47004 * 329.99435 * 11 10 8 39 39 H 1.09003 * 109.47626 * 53.27630 * 17 16 15 40 40 H 1.08997 * 109.47462 * 173.28132 * 17 16 15 41 41 H 1.09003 * 109.47104 * 293.28167 * 17 16 15 42 42 H 1.09009 * 109.47150 * 179.97438 * 20 18 16 43 43 H 1.08997 * 109.47532 * 299.99569 * 20 18 16 44 44 H 1.09001 * 109.47267 * 60.00613 * 20 18 16 45 45 H 0.97004 * 119.99637 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 3.0105 1.3222 1.1178 5 6 4.2800 0.7938 1.1394 6 6 4.9592 0.0918 0.0288 7 6 6.2616 -0.4464 0.0628 8 6 6.5111 -1.0049 -1.1482 9 8 7.6581 -1.6287 -1.5203 10 7 5.4091 -0.8287 -1.9216 11 6 5.2489 -1.2797 -3.3062 12 7 4.4502 -0.1454 -1.1633 13 7 4.7751 1.0303 2.3316 14 7 3.9136 1.6610 3.0468 15 6 2.8183 1.8705 2.3532 16 7 1.6796 2.5234 2.7938 17 6 0.5558 1.5874 2.9305 18 6 1.9331 3.2297 4.0566 19 1 2.7816 3.9025 3.9327 20 6 2.2451 2.2125 5.1561 21 6 0.7126 4.0259 4.4407 22 1 -0.1636 4.0093 3.8095 23 6 0.7149 4.7764 5.5972 24 7 1.7820 4.7970 6.3656 25 14 -0.7977 5.7639 6.0729 26 1 -1.9541 4.8477 6.2420 27 1 -0.5411 6.4788 7.3490 28 1 -1.1004 6.7509 5.0053 29 1 -0.5399 0.9353 -0.0004 30 1 -0.5400 -0.9353 -0.0045 31 1 1.8500 -0.9353 -0.0004 32 1 2.6075 1.4106 -0.9387 33 1 1.3600 2.1308 0.1071 34 1 6.9398 -0.4191 0.9029 35 1 7.6655 -2.5787 -1.3398 36 1 4.8310 -2.2864 -3.3145 37 1 4.5766 -0.6029 -3.8335 38 1 6.2201 -1.2855 -3.8011 39 1 0.8562 0.7479 3.5576 40 1 -0.2898 2.0994 3.3897 41 1 0.2669 1.2200 1.9458 42 1 2.4336 2.7366 6.0932 43 1 1.3966 1.5397 5.2802 44 1 3.1279 1.6366 4.8785 45 1 1.7835 5.3248 7.1795 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262960808.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:29 Heat of formation + Delta-G solvation = 175.269879 kcal Electronic energy + Delta-G solvation = -29045.281726 eV Core-core repulsion = 25103.751156 eV Total energy + Delta-G solvation = -3941.530570 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.48373 -41.39885 -37.63487 -37.27898 -36.03249 -33.76964 -32.85221 -32.46506 -29.89959 -29.44208 -28.70312 -27.06729 -26.51544 -25.18246 -25.11579 -22.85821 -21.91319 -21.23628 -20.58658 -19.75635 -19.35931 -18.50069 -16.86055 -16.69287 -16.11114 -15.97203 -15.56893 -15.48720 -15.01546 -14.76632 -14.52500 -14.32344 -14.13629 -13.70802 -13.53671 -13.28981 -13.02535 -12.85277 -12.45057 -12.35904 -12.01065 -11.62423 -11.57361 -11.38895 -11.11161 -10.91873 -10.82601 -10.76137 -10.49116 -10.24016 -10.05435 -9.98535 -9.79853 -9.66629 -9.52320 -8.92755 -8.80413 -8.59720 -8.37024 -7.38278 -6.00835 -4.08227 1.16012 1.75727 1.93815 1.95585 2.77075 2.81470 3.31793 3.37036 3.38387 3.53116 3.59220 4.04835 4.35738 4.54007 4.62531 4.73347 4.77064 4.85616 5.04377 5.08530 5.20763 5.28370 5.30427 5.49707 5.58229 5.68262 5.72098 5.84851 6.08100 6.15479 6.18770 6.25296 6.29345 6.43216 6.52711 6.55535 6.80888 6.98414 7.16149 7.17515 7.30757 7.33853 7.51453 7.68366 7.76082 7.99429 8.33337 8.48084 8.92537 9.26270 9.55955 11.05315 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.021653 B = 0.003021 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.811961 B = 9266.049227 C =10190.008347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.166 4.166 3 C 0.141 3.859 4 N -0.469 5.469 5 C 0.209 3.791 6 C 0.179 3.821 7 C -0.231 4.231 8 C 0.256 3.744 9 O -0.463 6.463 10 N -0.379 5.379 11 C 0.100 3.900 12 N -0.267 5.267 13 N -0.250 5.250 14 N -0.306 5.306 15 C 0.399 3.601 16 N -0.455 5.455 17 C 0.029 3.971 18 C 0.228 3.772 19 H 0.050 0.950 20 C -0.178 4.178 21 C -0.515 4.515 22 H 0.063 0.937 23 C 0.064 3.936 24 N -0.884 5.884 25 Si 0.899 3.101 26 H -0.277 1.277 27 H -0.287 1.287 28 H -0.277 1.277 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.111 0.889 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.166 0.834 35 H 0.399 0.601 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.031 0.969 40 H 0.096 0.904 41 H 0.056 0.944 42 H 0.089 0.911 43 H 0.020 0.980 44 H 0.051 0.949 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.876 -15.342 -19.263 24.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.019 3.981 4 N -0.164 5.164 5 C -0.056 4.056 6 C 0.014 3.986 7 C -0.262 4.262 8 C 0.089 3.911 9 O -0.266 6.266 10 N -0.173 5.173 11 C -0.042 4.042 12 N -0.097 5.097 13 N -0.093 5.093 14 N -0.153 5.153 15 C 0.044 3.956 16 N -0.179 5.179 17 C -0.118 4.118 18 C 0.124 3.876 19 H 0.068 0.932 20 C -0.237 4.237 21 C -0.554 4.554 22 H 0.081 0.919 23 C -0.138 4.138 24 N -0.521 5.521 25 Si 0.727 3.273 26 H -0.203 1.203 27 H -0.213 1.213 28 H -0.202 1.202 29 H 0.123 0.877 30 H 0.121 0.879 31 H 0.129 0.871 32 H 0.123 0.877 33 H 0.122 0.878 34 H 0.184 0.816 35 H 0.256 0.744 36 H 0.093 0.907 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.049 0.951 40 H 0.115 0.885 41 H 0.074 0.926 42 H 0.107 0.893 43 H 0.039 0.961 44 H 0.069 0.931 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.023 -14.249 -19.360 24.373 hybrid contribution -0.918 -0.605 0.193 1.116 sum 3.105 -14.854 -19.167 24.447 Atomic orbital electron populations 1.23941 0.95516 1.02512 0.98555 1.23032 0.96090 0.98066 1.01352 1.20966 0.91533 0.97315 0.88321 1.46230 1.12957 1.44902 1.12344 1.20884 0.84062 1.05378 0.95298 1.18531 0.92670 0.97497 0.89940 1.21117 0.97731 1.09603 0.97755 1.18653 0.82598 1.00233 0.89658 1.84890 1.29875 1.26926 1.84913 1.49084 1.10152 1.45768 1.12318 1.21864 1.04171 1.00709 0.77412 1.77713 1.11066 1.17478 1.03398 1.74302 1.23496 1.12255 0.99285 1.74982 1.00134 1.17990 1.22152 1.23221 0.96083 0.93927 0.82382 1.59270 0.99668 1.23021 1.35916 1.22533 0.94139 0.94585 1.00498 1.19390 0.98011 0.90832 0.79322 0.93172 1.22532 0.98524 0.98882 1.03765 1.20984 0.99315 1.27996 1.07072 0.91860 1.24886 0.96305 0.96525 0.96128 1.69917 1.27922 1.40360 1.13933 0.86547 0.82841 0.80150 0.77745 1.20300 1.21275 1.20235 0.87692 0.87900 0.87118 0.87717 0.87759 0.81609 0.74441 0.90728 0.88993 0.89180 0.95066 0.88542 0.92561 0.89277 0.96089 0.93075 0.92711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.73 12.46 29.01 0.36 -1.37 16 2 C -0.17 -2.02 9.31 -36.03 -0.34 -2.35 16 3 C 0.14 1.98 5.38 -5.19 -0.03 1.95 16 4 N -0.47 -8.41 2.82 -115.94 -0.33 -8.73 16 5 C 0.21 3.82 7.94 -153.80 -1.22 2.60 16 6 C 0.18 2.71 7.07 -82.90 -0.59 2.12 16 7 C -0.23 -3.03 10.78 -39.47 -0.43 -3.45 16 8 C 0.26 2.70 7.98 -16.72 -0.13 2.56 16 9 O -0.46 -3.45 13.58 -18.99 -0.26 -3.71 16 10 N -0.38 -3.92 4.03 -68.18 -0.28 -4.19 16 11 C 0.10 0.56 11.42 59.85 0.68 1.25 16 12 N -0.27 -3.54 10.96 33.35 0.37 -3.17 16 13 N -0.25 -5.27 12.21 32.60 0.40 -4.87 16 14 N -0.31 -7.12 8.97 30.32 0.27 -6.85 16 15 C 0.40 8.54 6.66 -318.82 -2.12 6.41 16 16 N -0.46 -10.01 4.73 -176.08 -0.83 -10.84 16 17 C 0.03 0.56 8.55 60.06 0.51 1.07 16 18 C 0.23 5.90 2.06 -68.86 -0.14 5.76 16 19 H 0.05 1.48 8.10 -51.93 -0.42 1.06 16 20 C -0.18 -4.55 8.28 37.16 0.31 -4.24 16 21 C -0.52 -13.81 7.79 -34.44 -0.27 -14.08 16 22 H 0.06 1.64 6.83 -52.49 -0.36 1.28 16 23 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 24 N -0.88 -25.29 11.32 55.43 0.63 -24.66 16 25 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 27 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 28 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 29 H 0.10 1.04 7.57 -52.49 -0.40 0.64 16 30 H 0.10 0.90 8.06 -52.49 -0.42 0.48 16 31 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 32 H 0.10 1.37 6.98 -51.93 -0.36 1.01 16 33 H 0.10 1.45 7.62 -51.93 -0.40 1.05 16 34 H 0.17 2.08 8.06 -52.48 -0.42 1.66 16 35 H 0.40 0.89 9.06 45.56 0.41 1.31 16 36 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.03 0.61 6.86 -51.93 -0.36 0.25 16 40 H 0.10 1.89 6.27 -51.93 -0.33 1.57 16 41 H 0.06 0.88 4.11 -51.93 -0.21 0.67 16 42 H 0.09 2.49 6.07 -51.92 -0.32 2.18 16 43 H 0.02 0.50 6.63 -51.93 -0.34 0.16 16 44 H 0.05 1.30 5.45 -51.93 -0.28 1.01 16 45 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 368.91 15.07 5.56 5.56 Total: -1.00 -33.84 368.91 -8.01 -41.86 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -5.03 Total: 3.79 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: -3.49 Total: -0.12 kcal Atomic # 7 Polarization: -63.55 SS G_CDS: 0.23 Total: -63.32 kcal Atomic # 8 Polarization: -3.45 SS G_CDS: -0.26 Total: -3.71 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.84 -8.01 -41.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262960808.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 217.125 kcal (2) G-P(sol) polarization free energy of solvation -33.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 183.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 175.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds