Wall clock time and date at job start Tue Mar 31 2020 18:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50703 * 120.00005 * 2 1 4 4 N 1.46505 * 109.46756 * 125.97885 * 3 2 1 5 5 C 1.37532 * 127.16558 * 84.46316 * 4 3 2 6 6 C 1.47903 * 126.47650 * 359.97438 * 5 4 3 7 7 C 1.40964 * 125.97408 * 180.02562 * 6 5 4 8 8 C 1.35669 * 107.79418 * 179.97438 * 7 6 5 9 9 O 1.35762 * 126.09846 * 179.97438 * 8 7 6 10 10 N 1.35782 * 107.80159 * 359.97438 * 8 7 6 11 11 C 1.46501 * 125.95405 * 180.02562 * 10 8 7 12 12 N 1.31771 * 125.96610 * 359.68707 * 6 5 4 13 13 N 1.31239 * 107.05325 * 179.97438 * 5 4 3 14 14 N 1.28514 * 109.94500 * 0.02562 * 13 5 4 15 15 C 1.31324 * 110.08772 * 359.74014 * 14 13 5 16 16 N 1.38458 * 126.37846 * 180.25605 * 15 14 13 17 17 C 1.46895 * 111.00085 * 248.56694 * 16 15 14 18 18 C 1.46899 * 110.99850 * 12.51705 * 16 15 14 19 19 H 1.08998 * 109.47133 * 55.00075 * 18 16 15 20 20 C 1.53003 * 109.46993 * 295.00109 * 18 16 15 21 21 C 1.50698 * 109.47296 * 175.00247 * 18 16 15 22 22 H 1.07994 * 119.99969 * 359.97438 * 21 18 16 23 23 C 1.37877 * 120.00194 * 180.02562 * 21 18 16 24 24 N 1.31517 * 119.99775 * 359.97438 * 23 21 18 25 25 Si 1.86797 * 120.00175 * 179.97438 * 23 21 18 26 26 H 1.48500 * 109.47304 * 59.99610 * 25 23 21 27 27 H 1.48502 * 109.47364 * 180.02562 * 25 23 21 28 28 H 1.48509 * 109.47015 * 299.99935 * 25 23 21 29 29 H 1.07998 * 119.99702 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.00066 * 179.72310 * 1 2 3 31 31 H 1.07998 * 119.99595 * 180.02562 * 2 1 3 32 32 H 1.09000 * 109.47091 * 245.97867 * 3 2 1 33 33 H 1.09006 * 109.46918 * 5.98061 * 3 2 1 34 34 H 1.08003 * 126.10074 * 359.97438 * 7 6 5 35 35 H 0.96696 * 113.99619 * 89.97140 * 9 8 7 36 36 H 1.09000 * 109.47719 * 89.99464 * 11 10 8 37 37 H 1.09000 * 109.47647 * 209.99877 * 11 10 8 38 38 H 1.08999 * 109.47004 * 329.99435 * 11 10 8 39 39 H 1.09003 * 109.47626 * 53.27630 * 17 16 15 40 40 H 1.08997 * 109.47462 * 173.28132 * 17 16 15 41 41 H 1.09003 * 109.47104 * 293.28167 * 17 16 15 42 42 H 1.09009 * 109.47150 * 179.97438 * 20 18 16 43 43 H 1.08997 * 109.47532 * 299.99569 * 20 18 16 44 44 H 1.09001 * 109.47267 * 60.00613 * 20 18 16 45 45 H 0.97004 * 119.99637 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 3.0105 1.3222 1.1178 5 6 4.2800 0.7938 1.1394 6 6 4.9592 0.0918 0.0288 7 6 6.2616 -0.4464 0.0628 8 6 6.5111 -1.0049 -1.1482 9 8 7.6581 -1.6287 -1.5203 10 7 5.4091 -0.8287 -1.9216 11 6 5.2489 -1.2797 -3.3062 12 7 4.4502 -0.1454 -1.1633 13 7 4.7751 1.0303 2.3316 14 7 3.9136 1.6610 3.0468 15 6 2.8183 1.8705 2.3532 16 7 1.6796 2.5234 2.7938 17 6 0.5558 1.5874 2.9305 18 6 1.9331 3.2297 4.0566 19 1 2.7816 3.9025 3.9327 20 6 2.2451 2.2125 5.1561 21 6 0.7126 4.0259 4.4407 22 1 -0.1636 4.0093 3.8095 23 6 0.7149 4.7764 5.5972 24 7 1.7820 4.7970 6.3656 25 14 -0.7977 5.7639 6.0729 26 1 -1.9541 4.8477 6.2420 27 1 -0.5411 6.4788 7.3490 28 1 -1.1004 6.7509 5.0053 29 1 -0.5399 0.9353 -0.0004 30 1 -0.5400 -0.9353 -0.0045 31 1 1.8500 -0.9353 -0.0004 32 1 2.6075 1.4106 -0.9387 33 1 1.3600 2.1308 0.1071 34 1 6.9398 -0.4191 0.9029 35 1 7.6655 -2.5787 -1.3398 36 1 4.8310 -2.2864 -3.3145 37 1 4.5766 -0.6029 -3.8335 38 1 6.2201 -1.2855 -3.8011 39 1 0.8562 0.7479 3.5576 40 1 -0.2898 2.0994 3.3897 41 1 0.2669 1.2200 1.9458 42 1 2.4336 2.7366 6.0932 43 1 1.3966 1.5397 5.2802 44 1 3.1279 1.6366 4.8785 45 1 1.7835 5.3248 7.1795 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262960808.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:28 Heat of formation + Delta-G solvation = 151.924602 kcal Electronic energy + Delta-G solvation = -29046.294053 eV Core-core repulsion = 25103.751156 eV Total energy + Delta-G solvation = -3942.542897 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.98173 -42.33026 -39.10029 -38.29352 -37.24166 -34.92286 -34.49017 -33.72024 -31.35083 -30.59061 -30.38029 -28.19750 -27.57448 -27.17969 -26.68029 -24.11597 -23.42507 -22.33626 -21.65987 -21.01894 -20.77761 -19.38246 -18.39795 -17.84702 -17.57735 -17.37934 -17.12482 -16.49945 -16.47273 -16.01166 -15.67161 -15.41409 -15.27374 -14.99280 -14.90279 -14.66572 -14.27904 -13.74366 -13.58662 -13.48355 -13.35842 -13.07148 -13.02646 -12.80217 -12.70591 -12.64140 -12.40006 -12.30196 -12.08007 -11.98093 -11.78325 -11.51837 -11.23283 -11.02261 -10.82933 -10.48742 -10.46227 -10.09830 -9.74550 -9.02419 -8.09083 -6.24396 0.04601 0.73713 0.86292 1.13594 1.41807 1.46705 1.49781 1.55096 1.58553 2.13841 2.43906 2.63463 3.03701 3.20273 3.22738 3.56883 3.73447 3.83198 4.05237 4.15405 4.21535 4.35489 4.42195 4.44227 4.51736 4.55681 4.60547 4.68954 4.69785 4.82110 4.85094 4.98525 5.00377 5.14693 5.24289 5.28456 5.37308 5.55246 5.57813 5.61324 5.63806 5.67386 5.82366 6.03064 6.24612 6.31100 6.57082 6.62613 6.84298 7.44053 7.70223 8.97334 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.021653 B = 0.003021 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.811961 B = 9266.049227 C =10190.008347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.184 4.184 3 C 0.138 3.862 4 N -0.461 5.461 5 C 0.233 3.767 6 C 0.147 3.853 7 C -0.256 4.256 8 C 0.281 3.719 9 O -0.458 6.458 10 N -0.366 5.366 11 C 0.088 3.912 12 N -0.268 5.268 13 N -0.288 5.288 14 N -0.349 5.349 15 C 0.380 3.620 16 N -0.455 5.455 17 C 0.035 3.965 18 C 0.240 3.760 19 H 0.002 0.998 20 C -0.160 4.160 21 C -0.525 4.525 22 H 0.073 0.927 23 C 0.013 3.987 24 N -0.919 5.919 25 Si 0.969 3.031 26 H -0.264 1.264 27 H -0.288 1.288 28 H -0.270 1.270 29 H 0.113 0.887 30 H 0.125 0.875 31 H 0.106 0.894 32 H 0.113 0.887 33 H 0.106 0.894 34 H 0.161 0.839 35 H 0.426 0.574 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.112 0.888 39 H 0.020 0.980 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.061 0.939 43 H 0.027 0.973 44 H 0.048 0.952 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.462 -17.036 -22.379 28.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.203 4.203 3 C 0.017 3.983 4 N -0.156 5.156 5 C -0.034 4.034 6 C -0.016 4.016 7 C -0.287 4.287 8 C 0.111 3.889 9 O -0.265 6.265 10 N -0.161 5.161 11 C -0.051 4.051 12 N -0.099 5.099 13 N -0.130 5.130 14 N -0.194 5.194 15 C 0.023 3.977 16 N -0.179 5.179 17 C -0.112 4.112 18 C 0.135 3.865 19 H 0.020 0.980 20 C -0.220 4.220 21 C -0.563 4.563 22 H 0.091 0.909 23 C -0.187 4.187 24 N -0.557 5.557 25 Si 0.794 3.206 26 H -0.189 1.189 27 H -0.214 1.214 28 H -0.195 1.195 29 H 0.131 0.869 30 H 0.143 0.857 31 H 0.124 0.876 32 H 0.131 0.869 33 H 0.124 0.876 34 H 0.178 0.822 35 H 0.287 0.713 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.130 0.870 39 H 0.039 0.961 40 H 0.110 0.890 41 H 0.109 0.891 42 H 0.080 0.920 43 H 0.046 0.954 44 H 0.066 0.934 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.600 -15.992 -22.518 27.740 hybrid contribution -0.345 -0.255 0.880 0.978 sum 2.255 -16.247 -21.638 27.152 Atomic orbital electron populations 1.24208 0.94794 1.03981 0.95333 1.22838 0.96592 0.96696 1.04180 1.21239 0.91179 0.98684 0.87179 1.46411 1.13428 1.43705 1.12012 1.21434 0.83721 1.03115 0.95173 1.18369 0.93654 0.99532 0.90091 1.21174 0.97272 1.11023 0.99206 1.18429 0.82969 0.98954 0.88547 1.84856 1.28081 1.29112 1.84483 1.49481 1.09257 1.43867 1.13446 1.22336 1.05948 1.02020 0.74818 1.77627 1.11979 1.17558 1.02759 1.74195 1.23969 1.14077 1.00787 1.74805 1.01241 1.19246 1.24150 1.23070 0.95609 0.95275 0.83711 1.59169 1.00632 1.24138 1.33916 1.22584 0.92769 0.93529 1.02296 1.18974 0.96093 0.90460 0.80993 0.98016 1.22319 0.98615 0.98572 1.02468 1.21286 0.99684 1.28079 1.07300 0.90875 1.25785 0.99267 0.97558 0.96071 1.70086 1.30128 1.41199 1.14323 0.85442 0.79246 0.78680 0.77218 1.18898 1.21422 1.19523 0.86875 0.85686 0.87601 0.86865 0.87624 0.82159 0.71283 0.88281 0.88309 0.87007 0.96078 0.89006 0.89139 0.91995 0.95404 0.93358 0.92834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 12.46 67.78 0.84 -1.71 16 2 C -0.18 -4.12 9.31 25.64 0.24 -3.88 16 3 C 0.14 3.73 5.38 85.63 0.46 4.20 16 4 N -0.46 -16.80 2.82 -520.71 -1.47 -18.26 16 5 C 0.23 8.76 7.94 136.25 1.08 9.85 16 6 C 0.15 4.44 7.07 42.38 0.30 4.74 16 7 C -0.26 -6.60 10.78 22.34 0.24 -6.36 16 8 C 0.28 5.25 7.98 83.49 0.67 5.91 16 9 O -0.46 -5.29 13.58 -90.88 -1.23 -6.52 16 10 N -0.37 -6.52 4.03 -480.60 -1.94 -8.46 16 11 C 0.09 0.64 11.42 127.77 1.46 2.10 16 12 N -0.27 -6.69 10.96 -48.40 -0.53 -7.22 16 13 N -0.29 -12.85 12.21 -50.79 -0.62 -13.47 16 14 N -0.35 -17.21 8.97 -57.98 -0.52 -17.73 16 15 C 0.38 16.89 6.66 260.09 1.73 18.62 16 16 N -0.46 -20.54 4.73 -710.98 -3.36 -23.90 16 17 C 0.03 1.30 8.55 127.69 1.09 2.39 16 18 C 0.24 12.98 2.06 44.17 0.09 13.07 16 19 H 0.00 0.12 8.10 -2.39 -0.02 0.10 16 20 C -0.16 -8.63 8.28 71.98 0.60 -8.04 16 21 C -0.53 -28.64 7.79 25.60 0.20 -28.44 16 22 H 0.07 3.76 6.83 -2.91 -0.02 3.74 16 23 C 0.01 0.70 5.30 84.65 0.45 1.15 16 24 N -0.92 -54.43 11.32 21.45 0.24 -54.19 16 25 Si 0.97 43.13 29.54 68.60 2.03 45.16 16 26 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 27 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 28 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 29 H 0.11 1.84 7.57 -2.91 -0.02 1.82 16 30 H 0.13 1.69 8.06 -2.91 -0.02 1.67 16 31 H 0.11 2.51 8.06 -2.91 -0.02 2.49 16 32 H 0.11 2.84 6.98 -2.39 -0.02 2.83 16 33 H 0.11 2.81 7.62 -2.38 -0.02 2.79 16 34 H 0.16 4.17 8.06 -2.91 -0.02 4.14 16 35 H 0.43 0.25 9.06 -74.06 -0.67 -0.43 16 36 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 37 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 39 H 0.02 0.82 6.86 -2.39 -0.02 0.80 16 40 H 0.09 3.53 6.27 -2.39 -0.01 3.52 16 41 H 0.09 2.71 4.11 -2.39 -0.01 2.70 16 42 H 0.06 3.65 6.07 -2.38 -0.01 3.64 16 43 H 0.03 1.39 6.63 -2.39 -0.02 1.37 16 44 H 0.05 2.60 5.45 -2.39 -0.01 2.59 16 45 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -77.75 368.91 2.42 -75.33 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 0.37 Total: 15.64 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: 9.45 Total: 13.60 kcal Atomic # 7 Polarization: -135.03 SS G_CDS: -8.19 Total: -143.22 kcal Atomic # 8 Polarization: -5.29 SS G_CDS: -1.23 Total: -6.52 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -77.75 2.42 -75.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262960808.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 227.256 kcal (2) G-P(sol) polarization free energy of solvation -77.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 151.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds