Wall clock time and date at job start Tue Mar 31 2020 16:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42906 * 109.47361 * 2 1 4 4 C 1.42894 * 114.00227 * 179.97438 * 3 2 1 5 5 H 1.09001 * 110.91558 * 26.09788 * 4 3 2 6 6 C 1.54910 * 111.00582 * 262.19395 * 4 3 2 7 7 N 1.47417 * 104.83372 * 204.91788 * 6 4 3 8 8 C 1.34781 * 125.65143 * 204.16782 * 7 6 4 9 9 O 1.21281 * 119.99274 * 355.17972 * 8 7 6 10 10 C 1.50696 * 120.00508 * 175.18571 * 8 7 6 11 11 C 1.53002 * 115.54904 * 79.99911 * 10 8 7 12 12 F 1.39902 * 109.47017 * 300.32121 * 11 10 8 13 13 F 1.39899 * 109.47289 * 60.32335 * 11 10 8 14 14 C 1.52999 * 117.49745 * 294.32891 * 10 8 7 15 15 C 1.53001 * 117.49990 * 225.67228 * 10 8 7 16 16 C 1.47028 * 108.70631 * 24.12451 * 7 6 4 17 17 C 1.54328 * 107.26776 * 358.94545 * 16 7 6 18 18 H 1.08995 * 110.72088 * 96.34174 * 17 16 7 19 19 C 1.53001 * 110.71802 * 219.43931 * 17 16 7 20 20 N 1.46493 * 109.47121 * 293.54584 * 19 17 16 21 21 C 1.36938 * 119.99886 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00398 * 359.97438 * 21 20 19 23 23 C 1.38812 * 119.99872 * 180.02562 * 21 20 19 24 24 N 1.31625 * 120.00164 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 120.00074 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47297 * 180.02562 * 25 23 21 27 27 H 1.48500 * 109.47005 * 300.00401 * 25 23 21 28 28 H 1.48500 * 109.46701 * 59.99995 * 25 23 21 29 29 H 1.09002 * 109.46994 * 300.00483 * 1 2 3 30 30 H 1.09003 * 109.47001 * 59.99976 * 1 2 3 31 31 H 1.09001 * 109.47171 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47375 * 240.00167 * 2 1 3 33 33 H 1.08998 * 109.47411 * 119.99428 * 2 1 3 34 34 H 1.09003 * 110.36541 * 86.07695 * 6 4 3 35 35 H 1.09000 * 110.45688 * 323.80312 * 6 4 3 36 36 H 1.08997 * 109.46704 * 180.32570 * 11 10 8 37 37 H 1.09001 * 117.49943 * 0.02562 * 14 10 8 38 38 H 1.09004 * 117.49787 * 145.01447 * 14 10 8 39 39 H 1.09004 * 117.49795 * 214.97812 * 15 10 8 40 40 H 1.08999 * 117.49450 * 359.97351 * 15 10 8 41 41 H 1.08992 * 109.88738 * 239.52488 * 16 7 6 42 42 H 1.08999 * 109.87960 * 118.35732 * 16 7 6 43 43 H 1.08996 * 109.46997 * 173.54482 * 19 17 16 44 44 H 1.09006 * 109.46888 * 53.54734 * 19 17 16 45 45 H 0.97000 * 120.00509 * 0.02562 * 20 19 17 46 46 H 0.96997 * 119.99705 * 0.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.8911 0.5793 -0.4470 6 6 3.9683 1.7000 1.4335 7 7 5.2602 2.3839 1.2425 8 6 6.2837 2.3887 2.1194 9 8 6.1525 1.8687 3.2072 10 6 7.5908 3.0404 1.7484 11 6 7.6300 4.5640 1.8824 12 9 6.6528 5.1300 1.0566 13 9 7.3816 4.9218 3.2118 14 6 8.3964 2.4102 0.6105 15 6 8.8766 2.2707 2.0572 16 6 5.2478 3.0590 -0.0636 17 6 3.8865 2.7544 -0.7238 18 1 3.1818 3.5669 -0.5470 19 6 4.0562 2.5043 -2.2236 20 7 4.4866 3.7416 -2.8793 21 6 4.7046 3.7600 -4.2311 22 1 4.5597 2.8623 -4.8138 23 6 5.1130 4.9322 -4.8524 24 7 5.2912 6.0259 -4.1421 25 14 5.4111 4.9572 -6.6963 26 1 5.8373 6.3180 -7.1105 27 1 6.4755 3.9799 -7.0389 28 1 4.1580 4.5931 -7.4052 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 4.1142 0.7501 1.9479 35 1 3.2830 2.3339 1.9963 36 1 8.6129 4.9296 1.5852 37 1 7.9807 1.5246 0.1299 38 1 8.9546 3.0811 -0.0426 39 1 9.7506 2.8499 2.3554 40 1 8.7770 1.2932 2.5291 41 1 6.0559 2.6760 -0.6866 42 1 5.3607 4.1343 0.0740 43 1 3.1059 2.1800 -2.6476 44 1 4.8072 1.7299 -2.3801 45 1 4.6180 4.5476 -2.3559 46 1 5.1375 6.0127 -3.1845 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264526793.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:37 Heat of formation + Delta-G solvation = -136.447650 kcal Electronic energy + Delta-G solvation = -30395.026849 eV Core-core repulsion = 25956.997255 eV Total energy + Delta-G solvation = -4438.029594 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.08040 -47.09100 -40.49152 -38.89129 -37.02434 -36.59586 -34.89752 -32.36524 -31.37776 -29.62656 -28.54446 -27.47121 -25.40129 -24.13711 -22.97100 -22.87153 -22.85037 -21.55581 -20.33030 -19.08802 -18.10278 -17.53064 -17.27265 -17.19965 -17.05202 -16.28025 -15.81801 -15.52273 -15.16211 -14.75623 -14.67118 -14.29821 -14.15366 -13.84197 -13.71396 -13.50505 -13.36882 -13.22987 -12.86147 -12.77469 -12.67673 -12.47960 -12.28865 -11.94987 -11.87891 -11.71720 -11.48590 -11.18380 -10.98595 -10.95794 -10.82058 -10.70790 -10.68656 -10.39879 -10.02064 -9.93823 -9.62434 -9.16158 -8.90987 -8.65419 -7.03270 -6.11277 -3.11815 2.33326 2.62034 3.12862 3.44566 3.50239 3.53801 3.59645 3.71439 3.91843 4.16497 4.28354 4.29264 4.50650 4.55966 4.71384 4.79852 4.89489 4.94128 4.97456 5.08789 5.17088 5.20488 5.24699 5.27512 5.34537 5.50481 5.53207 5.57196 5.63860 5.69682 5.73793 5.79293 5.84261 5.89743 5.99617 6.08153 6.15231 6.17923 6.60373 6.64129 7.16512 7.37296 7.78410 7.98443 8.74662 9.20483 10.06863 10.21573 11.37062 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.007663 B = 0.004905 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3653.062655 B = 5707.259827 C = 8537.645664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.366 6.366 4 C 0.086 3.914 5 H 0.081 0.919 6 C 0.090 3.910 7 N -0.604 5.604 8 C 0.571 3.429 9 O -0.532 6.532 10 C -0.228 4.228 11 C 0.310 3.690 12 F -0.188 7.188 13 F -0.197 7.197 14 C -0.137 4.137 15 C -0.124 4.124 16 C 0.095 3.905 17 C -0.103 4.103 18 H 0.095 0.905 19 C 0.172 3.828 20 N -0.742 5.742 21 C -0.333 4.333 22 H 0.064 0.936 23 C -0.043 4.043 24 N -0.942 5.942 25 Si 1.079 2.921 26 H -0.285 1.285 27 H -0.296 1.296 28 H -0.295 1.295 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.051 0.949 33 H 0.047 0.953 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.122 0.878 37 H 0.111 0.889 38 H 0.117 0.883 39 H 0.112 0.888 40 H 0.111 0.889 41 H 0.080 0.920 42 H 0.095 0.905 43 H 0.028 0.972 44 H 0.020 0.980 45 H 0.368 0.632 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.700 -10.619 12.155 16.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.284 6.284 4 C 0.026 3.974 5 H 0.099 0.901 6 C -0.033 4.033 7 N -0.338 5.338 8 C 0.358 3.642 9 O -0.409 6.409 10 C -0.232 4.232 11 C 0.256 3.744 12 F -0.169 7.169 13 F -0.178 7.178 14 C -0.174 4.174 15 C -0.161 4.161 16 C -0.027 4.027 17 C -0.122 4.122 18 H 0.114 0.886 19 C 0.044 3.956 20 N -0.387 5.387 21 C -0.464 4.464 22 H 0.082 0.918 23 C -0.241 4.241 24 N -0.587 5.587 25 Si 0.910 3.090 26 H -0.210 1.210 27 H -0.223 1.223 28 H -0.223 1.223 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.140 0.860 37 H 0.129 0.871 38 H 0.135 0.865 39 H 0.131 0.869 40 H 0.130 0.870 41 H 0.098 0.902 42 H 0.113 0.887 43 H 0.046 0.954 44 H 0.038 0.962 45 H 0.201 0.799 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.938 -9.954 11.368 15.393 hybrid contribution -0.536 -0.878 1.454 1.781 sum 2.402 -10.832 12.823 16.956 Atomic orbital electron populations 1.21737 0.93654 1.02118 1.03316 1.22560 0.95743 0.83844 1.00074 1.87967 1.19508 1.26344 1.94613 1.23188 0.81657 0.98856 0.93681 0.90138 1.22630 0.84767 0.97931 0.97976 1.48239 1.14404 1.51720 1.19455 1.18643 0.82712 0.79655 0.83235 1.90698 1.82374 1.46444 1.21385 1.22414 0.94527 0.94617 1.11634 1.21125 0.91557 0.88369 0.73395 1.92968 1.65978 1.86185 1.71730 1.93022 1.95686 1.92734 1.36367 1.23209 1.00057 1.02913 0.91267 1.23068 0.93249 1.01665 0.98138 1.22582 0.98349 0.99656 0.82100 1.22585 0.95669 0.97191 0.96750 0.88622 1.20543 0.97276 0.90394 0.87350 1.42329 1.82870 1.07457 1.06086 1.19993 1.43656 0.98374 0.84340 0.91837 1.25745 0.99855 0.91875 1.06590 1.70882 1.51994 1.28276 1.07584 0.83257 0.75875 0.75607 0.74272 1.21031 1.22323 1.22290 0.91901 0.91578 0.91208 0.93063 0.93507 0.90482 0.90355 0.86035 0.87090 0.86477 0.86932 0.87028 0.90214 0.88708 0.95389 0.96217 0.79881 0.93329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 10.28 37.16 0.38 -1.03 16 2 C 0.05 0.58 6.49 37.16 0.24 0.83 16 3 O -0.37 -5.11 10.15 -35.23 -0.36 -5.47 16 4 C 0.09 1.17 2.99 -24.58 -0.07 1.10 16 5 H 0.08 1.02 7.74 -51.93 -0.40 0.62 16 6 C 0.09 1.25 6.62 -2.53 -0.02 1.23 16 7 N -0.60 -8.95 3.33 -170.52 -0.57 -9.52 16 8 C 0.57 8.76 6.82 -10.99 -0.07 8.69 16 9 O -0.53 -9.66 17.29 5.56 0.10 -9.57 16 10 C -0.23 -2.76 1.38 -155.66 -0.21 -2.97 16 11 C 0.31 3.74 5.07 37.16 0.19 3.92 16 12 F -0.19 -2.78 13.94 2.25 0.03 -2.75 16 13 F -0.20 -2.79 17.24 2.25 0.04 -2.75 16 14 C -0.14 -1.31 8.96 -26.70 -0.24 -1.55 16 15 C -0.12 -1.11 9.87 -26.70 -0.26 -1.38 16 16 C 0.09 1.46 5.25 -3.06 -0.02 1.45 16 17 C -0.10 -1.66 2.75 -88.78 -0.24 -1.90 16 18 H 0.10 1.67 8.14 -51.93 -0.42 1.25 16 19 C 0.17 3.35 5.58 -4.04 -0.02 3.33 16 20 N -0.74 -18.00 5.44 -59.91 -0.33 -18.33 16 21 C -0.33 -9.15 9.99 -15.06 -0.15 -9.30 16 22 H 0.06 1.72 7.83 -52.49 -0.41 1.31 16 23 C -0.04 -1.22 5.50 -17.43 -0.10 -1.31 16 24 N -0.94 -28.50 13.70 55.49 0.76 -27.74 16 25 Si 1.08 25.38 29.92 -169.99 -5.09 20.30 16 26 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.30 -6.61 7.11 56.52 0.40 -6.21 16 28 H -0.30 -6.69 7.11 56.52 0.40 -6.28 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.52 8.12 -51.93 -0.42 0.10 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.08 1.01 8.08 -51.93 -0.42 0.59 16 35 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.12 0.98 8.11 -51.93 -0.42 0.56 16 37 H 0.11 1.09 8.13 -51.93 -0.42 0.67 16 38 H 0.12 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.08 1.24 6.91 -51.93 -0.36 0.88 16 42 H 0.09 1.58 5.23 -51.93 -0.27 1.31 16 43 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.02 0.38 8.06 -51.93 -0.42 -0.04 16 45 H 0.37 9.16 6.35 -40.82 -0.26 8.90 16 46 H 0.26 7.62 6.77 -40.82 -0.28 7.34 16 LS Contribution 382.66 15.07 5.77 5.77 Total: -1.00 -34.19 382.66 -7.35 -41.54 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -7.11 Total: 7.41 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -0.60 Total: 1.11 kcal Atomic # 7 Polarization: -55.45 SS G_CDS: -0.13 Total: -55.59 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -0.26 Total: -15.03 kcal Atomic # 9 Polarization: -5.57 SS G_CDS: 0.07 Total: -5.50 kcal Atomic # 14 Polarization: 25.38 SS G_CDS: -5.09 Total: 20.30 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.19 -7.35 -41.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264526793.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.908 kcal (2) G-P(sol) polarization free energy of solvation -34.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds