Wall clock time and date at job start Tue Mar 31 2020 16:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42906 * 109.47361 * 2 1 4 4 C 1.42894 * 114.00227 * 179.97438 * 3 2 1 5 5 H 1.09001 * 110.91558 * 26.09788 * 4 3 2 6 6 C 1.54910 * 111.00582 * 262.19395 * 4 3 2 7 7 N 1.47417 * 104.83372 * 204.91788 * 6 4 3 8 8 C 1.34781 * 125.65143 * 204.16782 * 7 6 4 9 9 O 1.21281 * 119.99274 * 355.17972 * 8 7 6 10 10 C 1.50696 * 120.00508 * 175.18571 * 8 7 6 11 11 C 1.53002 * 115.54904 * 79.99911 * 10 8 7 12 12 F 1.39902 * 109.47017 * 300.32121 * 11 10 8 13 13 F 1.39899 * 109.47289 * 60.32335 * 11 10 8 14 14 C 1.52999 * 117.49745 * 294.32891 * 10 8 7 15 15 C 1.53001 * 117.49990 * 225.67228 * 10 8 7 16 16 C 1.47028 * 108.70631 * 24.12451 * 7 6 4 17 17 C 1.54328 * 107.26776 * 358.94545 * 16 7 6 18 18 H 1.08995 * 110.72088 * 96.34174 * 17 16 7 19 19 C 1.53001 * 110.71802 * 219.43931 * 17 16 7 20 20 N 1.46493 * 109.47121 * 293.54584 * 19 17 16 21 21 C 1.36938 * 119.99886 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00398 * 359.97438 * 21 20 19 23 23 C 1.38812 * 119.99872 * 180.02562 * 21 20 19 24 24 N 1.31625 * 120.00164 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 120.00074 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47297 * 180.02562 * 25 23 21 27 27 H 1.48500 * 109.47005 * 300.00401 * 25 23 21 28 28 H 1.48500 * 109.46701 * 59.99995 * 25 23 21 29 29 H 1.09002 * 109.46994 * 300.00483 * 1 2 3 30 30 H 1.09003 * 109.47001 * 59.99976 * 1 2 3 31 31 H 1.09001 * 109.47171 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47375 * 240.00167 * 2 1 3 33 33 H 1.08998 * 109.47411 * 119.99428 * 2 1 3 34 34 H 1.09003 * 110.36541 * 86.07695 * 6 4 3 35 35 H 1.09000 * 110.45688 * 323.80312 * 6 4 3 36 36 H 1.08997 * 109.46704 * 180.32570 * 11 10 8 37 37 H 1.09001 * 117.49943 * 0.02562 * 14 10 8 38 38 H 1.09004 * 117.49787 * 145.01447 * 14 10 8 39 39 H 1.09004 * 117.49795 * 214.97812 * 15 10 8 40 40 H 1.08999 * 117.49450 * 359.97351 * 15 10 8 41 41 H 1.08992 * 109.88738 * 239.52488 * 16 7 6 42 42 H 1.08999 * 109.87960 * 118.35732 * 16 7 6 43 43 H 1.08996 * 109.46997 * 173.54482 * 19 17 16 44 44 H 1.09006 * 109.46888 * 53.54734 * 19 17 16 45 45 H 0.97000 * 120.00509 * 0.02562 * 20 19 17 46 46 H 0.96997 * 119.99705 * 0.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.8911 0.5793 -0.4470 6 6 3.9683 1.7000 1.4335 7 7 5.2602 2.3839 1.2425 8 6 6.2837 2.3887 2.1194 9 8 6.1525 1.8687 3.2072 10 6 7.5908 3.0404 1.7484 11 6 7.6300 4.5640 1.8824 12 9 6.6528 5.1300 1.0566 13 9 7.3816 4.9218 3.2118 14 6 8.3964 2.4102 0.6105 15 6 8.8766 2.2707 2.0572 16 6 5.2478 3.0590 -0.0636 17 6 3.8865 2.7544 -0.7238 18 1 3.1818 3.5669 -0.5470 19 6 4.0562 2.5043 -2.2236 20 7 4.4866 3.7416 -2.8793 21 6 4.7046 3.7600 -4.2311 22 1 4.5597 2.8623 -4.8138 23 6 5.1130 4.9322 -4.8524 24 7 5.2912 6.0259 -4.1421 25 14 5.4111 4.9572 -6.6963 26 1 5.8373 6.3180 -7.1105 27 1 6.4755 3.9799 -7.0389 28 1 4.1580 4.5931 -7.4052 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 4.1142 0.7501 1.9479 35 1 3.2830 2.3339 1.9963 36 1 8.6129 4.9296 1.5852 37 1 7.9807 1.5246 0.1299 38 1 8.9546 3.0811 -0.0426 39 1 9.7506 2.8499 2.3554 40 1 8.7770 1.2932 2.5291 41 1 6.0559 2.6760 -0.6866 42 1 5.3607 4.1343 0.0740 43 1 3.1059 2.1800 -2.6476 44 1 4.8072 1.7299 -2.3801 45 1 4.6180 4.5476 -2.3559 46 1 5.1375 6.0127 -3.1845 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264526793.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:36 Heat of formation + Delta-G solvation = -158.694296 kcal Electronic energy + Delta-G solvation = -30395.991536 eV Core-core repulsion = 25956.997255 eV Total energy + Delta-G solvation = -4438.994281 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -50.09528 -48.12994 -41.65234 -40.00496 -38.02650 -37.74923 -36.67809 -33.97010 -32.52433 -31.04892 -29.85466 -28.37513 -26.94356 -25.60148 -24.48058 -23.82944 -23.58159 -22.73828 -21.70012 -20.19232 -19.39667 -19.04041 -18.55671 -18.24932 -18.10861 -17.46004 -16.84097 -16.62246 -16.44132 -16.14855 -15.92814 -15.60340 -15.39024 -15.30221 -14.99353 -14.90984 -14.56168 -14.43605 -14.01439 -13.89355 -13.84476 -13.54446 -13.31663 -13.04943 -12.73594 -12.71365 -12.69025 -12.60012 -12.44473 -12.25307 -12.12261 -11.85388 -11.80895 -11.71843 -11.64865 -11.26783 -11.09249 -10.89793 -10.62048 -9.89049 -9.08311 -8.34088 -5.29096 1.17949 1.53949 1.62616 1.71982 1.88415 2.32294 2.54671 2.58556 2.75159 2.98632 3.14818 3.27587 3.42234 3.44825 3.47040 3.53293 3.72745 3.87232 3.94642 4.02333 4.08496 4.15035 4.16281 4.25364 4.35217 4.44343 4.46418 4.54534 4.57319 4.59641 4.71645 4.73890 4.82240 4.82775 4.96578 5.01001 5.01415 5.01828 5.14179 5.25873 5.62623 6.15761 6.17727 6.54616 6.79908 7.12348 8.02339 8.13776 9.17466 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.007663 B = 0.004905 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3653.062655 B = 5707.259827 C = 8537.645664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.045 3.955 3 O -0.387 6.387 4 C 0.100 3.900 5 H 0.097 0.903 6 C 0.090 3.910 7 N -0.604 5.604 8 C 0.565 3.435 9 O -0.567 6.567 10 C -0.256 4.256 11 C 0.300 3.700 12 F -0.209 7.209 13 F -0.213 7.213 14 C -0.127 4.127 15 C -0.104 4.104 16 C 0.109 3.891 17 C -0.097 4.097 18 H 0.078 0.922 19 C 0.178 3.822 20 N -0.752 5.752 21 C -0.334 4.334 22 H 0.067 0.933 23 C -0.099 4.099 24 N -0.973 5.973 25 Si 1.126 2.874 26 H -0.295 1.295 27 H -0.275 1.275 28 H -0.282 1.282 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.094 0.906 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.169 0.831 37 H 0.106 0.894 38 H 0.135 0.865 39 H 0.144 0.856 40 H 0.107 0.893 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.021 0.979 44 H 0.031 0.969 45 H 0.362 0.638 46 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.777 -12.192 11.649 17.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.030 4.030 3 O -0.305 6.305 4 C 0.041 3.959 5 H 0.115 0.885 6 C -0.032 4.032 7 N -0.337 5.337 8 C 0.353 3.647 9 O -0.446 6.446 10 C -0.259 4.259 11 C 0.247 3.753 12 F -0.190 7.190 13 F -0.194 7.194 14 C -0.164 4.164 15 C -0.141 4.141 16 C -0.014 4.014 17 C -0.117 4.117 18 H 0.097 0.903 19 C 0.051 3.949 20 N -0.397 5.397 21 C -0.465 4.465 22 H 0.085 0.915 23 C -0.291 4.291 24 N -0.621 5.621 25 Si 0.951 3.049 26 H -0.221 1.221 27 H -0.201 1.201 28 H -0.208 1.208 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.113 0.887 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.106 0.894 35 H 0.088 0.912 36 H 0.186 0.814 37 H 0.124 0.876 38 H 0.153 0.847 39 H 0.162 0.838 40 H 0.125 0.875 41 H 0.099 0.901 42 H 0.100 0.900 43 H 0.039 0.961 44 H 0.049 0.951 45 H 0.194 0.806 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 3.992 -11.576 10.877 16.378 hybrid contribution -0.950 -0.470 1.665 1.974 sum 3.042 -12.047 12.542 17.654 Atomic orbital electron populations 1.21763 0.92699 1.03549 1.02604 1.22827 0.96588 0.82441 1.01187 1.87953 1.19296 1.28628 1.94665 1.23026 0.82067 0.97855 0.92989 0.88535 1.22651 0.84364 0.98153 0.98078 1.48311 1.14770 1.51483 1.19154 1.19273 0.83701 0.79068 0.82622 1.90668 1.83198 1.48080 1.22634 1.22476 0.93987 0.94695 1.14782 1.21738 0.92784 0.88437 0.72331 1.92926 1.67192 1.86563 1.72307 1.92984 1.95887 1.92895 1.37674 1.23324 0.98932 1.02540 0.91594 1.23258 0.92312 1.01200 0.97300 1.22334 0.97758 0.98931 0.82339 1.22397 0.95994 0.98258 0.95018 0.90340 1.20587 0.96723 0.88697 0.88916 1.42497 1.82946 1.08800 1.05431 1.20338 1.42107 0.98301 0.85790 0.91545 1.27110 1.00086 0.91661 1.10196 1.70990 1.54386 1.29480 1.07202 0.82652 0.76815 0.75506 0.69945 1.22073 1.20092 1.20798 0.92164 0.92726 0.88708 0.92346 0.91918 0.89434 0.91246 0.81421 0.87579 0.84695 0.83804 0.87506 0.90066 0.90020 0.96135 0.95099 0.80593 0.94504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 10.28 71.98 0.74 -1.83 16 2 C 0.05 0.90 6.49 71.98 0.47 1.37 16 3 O -0.39 -10.52 10.15 -148.98 -1.51 -12.04 16 4 C 0.10 2.67 2.99 31.99 0.10 2.76 16 5 H 0.10 2.27 7.74 -2.39 -0.02 2.25 16 6 C 0.09 2.48 6.62 86.86 0.58 3.05 16 7 N -0.60 -17.81 3.33 -811.80 -2.70 -20.51 16 8 C 0.56 17.18 6.82 87.65 0.60 17.78 16 9 O -0.57 -20.59 17.29 -3.03 -0.05 -20.64 16 10 C -0.26 -5.84 1.38 -52.93 -0.07 -5.92 16 11 C 0.30 6.89 5.07 71.98 0.37 7.26 16 12 F -0.21 -6.22 13.94 44.97 0.63 -5.59 16 13 F -0.21 -5.95 17.24 44.97 0.78 -5.18 16 14 C -0.13 -2.14 8.96 30.62 0.27 -1.86 16 15 C -0.10 -1.60 9.87 30.62 0.30 -1.29 16 16 C 0.11 3.35 5.25 86.73 0.46 3.81 16 17 C -0.10 -3.15 2.75 -9.60 -0.03 -3.18 16 18 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 19 C 0.18 6.84 5.58 86.38 0.48 7.32 16 20 N -0.75 -36.67 5.44 -343.46 -1.87 -38.54 16 21 C -0.33 -18.24 9.99 84.03 0.84 -17.40 16 22 H 0.07 3.53 7.83 -2.91 -0.02 3.51 16 23 C -0.10 -5.58 5.50 84.86 0.47 -5.12 16 24 N -0.97 -59.48 13.70 21.65 0.30 -59.19 16 25 Si 1.13 50.48 29.92 68.60 2.05 52.53 16 26 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 27 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 28 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 29 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.06 1.08 8.12 -2.39 -0.02 1.06 16 33 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.09 2.23 8.08 -2.39 -0.02 2.21 16 35 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.17 2.24 8.11 -2.39 -0.02 2.22 16 37 H 0.11 1.90 8.13 -2.39 -0.02 1.88 16 38 H 0.13 1.80 8.14 -2.38 -0.02 1.78 16 39 H 0.14 1.30 8.14 -2.38 -0.02 1.28 16 40 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.08 2.48 6.91 -2.39 -0.02 2.46 16 42 H 0.08 2.79 5.23 -2.39 -0.01 2.78 16 43 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.03 1.15 8.06 -2.38 -0.02 1.13 16 45 H 0.36 18.43 6.35 -92.71 -0.59 17.84 16 46 H 0.24 14.94 6.77 -92.71 -0.63 14.31 16 Total: -1.00 -74.43 382.66 3.72 -70.71 By element: Atomic # 1 Polarization: 31.15 SS G_CDS: 0.54 Total: 31.69 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: 5.56 Total: 6.75 kcal Atomic # 7 Polarization: -113.96 SS G_CDS: -4.27 Total: -118.23 kcal Atomic # 8 Polarization: -31.11 SS G_CDS: -1.57 Total: -32.68 kcal Atomic # 9 Polarization: -12.17 SS G_CDS: 1.40 Total: -10.77 kcal Atomic # 14 Polarization: 50.48 SS G_CDS: 2.05 Total: 52.53 kcal Total: -74.43 3.72 -70.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264526793.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.981 kcal (2) G-P(sol) polarization free energy of solvation -74.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds