Wall clock time and date at job start Tue Mar 31 2020 18:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46862 * 2 1 4 4 C 1.52999 * 109.46823 * 119.99692 * 2 1 3 5 5 C 1.53004 * 109.46989 * 174.99871 * 4 2 1 6 6 H 1.09000 * 109.46662 * 55.00238 * 5 4 2 7 7 C 1.52996 * 109.47336 * 174.99994 * 5 4 2 8 8 N 1.46498 * 109.47059 * 175.00083 * 7 5 4 9 9 C 1.36943 * 119.99752 * 179.72430 * 8 7 5 10 10 H 1.08002 * 119.99793 * 0.27665 * 9 8 7 11 11 C 1.38811 * 120.00012 * 180.27737 * 9 8 7 12 12 N 1.31624 * 119.99698 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00072 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47159 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.47290 * 120.00044 * 13 11 9 16 16 H 1.48503 * 109.47163 * 240.00049 * 13 11 9 17 17 N 1.46494 * 109.47171 * 295.00630 * 5 4 2 18 18 C 1.34779 * 120.00531 * 84.99693 * 17 5 4 19 19 O 1.21574 * 119.99758 * 0.02562 * 18 17 5 20 20 C 1.47690 * 120.00233 * 179.97438 * 18 17 5 21 21 C 1.41598 * 120.03274 * 0.02562 * 20 18 17 22 22 C 1.35782 * 119.54716 * 179.97438 * 21 20 18 23 23 C 1.40854 * 119.39230 * 359.97438 * 22 21 20 24 24 N 1.32488 * 133.41700 * 180.02562 * 23 22 21 25 25 N 1.28533 * 110.24456 * 180.02562 * 24 23 22 26 26 N 1.28987 * 110.84044 * 359.97438 * 25 24 23 27 27 N 1.36932 * 119.93323 * 0.02562 * 23 22 21 28 28 C 1.35493 * 120.83903 * 359.74119 * 27 23 22 29 29 H 1.08997 * 109.47247 * 299.99954 * 1 2 3 30 30 H 1.09000 * 109.47485 * 60.00459 * 1 2 3 31 31 H 1.09006 * 109.47094 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47247 * 240.00046 * 2 1 3 33 33 H 1.08997 * 109.47152 * 59.99987 * 3 2 1 34 34 H 1.09001 * 109.46642 * 179.97438 * 3 2 1 35 35 H 1.08993 * 109.46832 * 299.99688 * 3 2 1 36 36 H 1.08997 * 109.47199 * 55.00713 * 4 2 1 37 37 H 1.08995 * 109.47432 * 294.99745 * 4 2 1 38 38 H 1.09004 * 109.47066 * 55.00351 * 7 5 4 39 39 H 1.08994 * 109.46974 * 295.00498 * 7 5 4 40 40 H 0.97001 * 120.00384 * 0.02562 * 8 7 5 41 41 H 0.96999 * 119.99739 * 180.02562 * 12 11 9 42 42 H 0.97009 * 119.99912 * 264.99313 * 17 5 4 43 43 H 1.07997 * 120.22708 * 359.95533 * 21 20 18 44 44 H 1.08002 * 120.30074 * 180.02562 * 22 21 20 45 45 H 1.08002 * 119.81927 * 180.25606 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.8310 1.1880 6 1 3.9953 0.1612 1.0528 7 6 4.0851 -1.4393 2.4919 8 7 5.5304 -1.6550 2.3875 9 6 6.2209 -2.1889 3.4427 10 1 5.6993 -2.4552 4.3502 11 6 7.5913 -2.3879 3.3460 12 7 8.2270 -2.0629 2.2402 13 14 8.5331 -3.1169 4.7850 14 1 7.5942 -3.3943 5.9015 15 1 9.1842 -4.3823 4.3605 16 1 9.5696 -2.1542 5.2369 17 7 3.9479 -1.6871 0.0627 18 6 4.0651 -1.1630 -1.1735 19 8 3.8534 0.0204 -1.3545 20 6 4.4519 -2.0260 -2.3079 21 6 4.6992 -3.4043 -2.0977 22 6 5.0538 -4.1887 -3.1477 23 6 5.1690 -3.6170 -4.4299 24 7 5.4871 -4.1056 -5.6196 25 7 5.4562 -3.1748 -6.5054 26 7 5.1255 -2.0468 -5.9744 27 7 4.9244 -2.2814 -4.6069 28 6 4.5659 -1.4964 -3.5623 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.6766 1.9563 0.8899 34 1 3.1299 1.4425 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6054 -1.7197 1.2952 37 1 1.7516 -0.1582 2.1370 38 1 3.5877 -2.3923 2.6722 39 1 3.8779 -0.7593 3.3181 40 1 5.9989 -1.4155 1.5727 41 1 9.1845 -2.2024 2.1725 42 1 4.1173 -2.6313 0.2072 43 1 4.6068 -3.8286 -1.1089 44 1 5.2448 -5.2416 -3.0013 45 1 4.3729 -0.4458 -3.7213 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268108937.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:00 Heat of formation + Delta-G solvation = 118.568026 kcal Electronic energy + Delta-G solvation = -28748.662251 eV Core-core repulsion = 24804.672904 eV Total energy + Delta-G solvation = -3943.989347 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.65676 -40.57819 -38.68668 -36.84134 -35.16640 -34.50592 -33.65539 -32.47933 -31.21472 -30.80042 -29.29216 -27.01653 -25.89850 -25.58281 -24.66176 -23.15872 -22.98240 -21.72360 -20.69103 -19.85968 -19.13557 -17.77831 -17.72789 -17.14726 -17.03706 -16.26732 -15.82876 -15.34754 -15.05191 -14.65582 -14.34203 -14.03532 -13.85405 -13.74038 -13.64698 -13.17096 -13.13567 -12.98644 -12.79419 -12.29346 -12.17348 -12.13576 -12.08394 -11.91987 -11.65290 -11.32487 -11.20053 -11.09195 -10.92968 -10.69877 -10.51067 -10.37044 -10.29862 -10.10778 -9.99851 -9.85470 -9.06017 -8.99388 -8.85955 -7.10051 -5.90854 -3.21256 -0.14945 0.16472 1.33256 1.71379 2.43160 3.00617 3.19456 3.34163 3.36054 3.40645 3.42775 3.81450 4.09472 4.28355 4.44864 4.51655 4.65562 4.82229 4.99752 5.03330 5.03857 5.26193 5.33463 5.38561 5.42505 5.45301 5.49572 5.57255 5.65049 5.73918 5.81589 5.89268 5.94901 5.97438 6.00681 6.04117 6.14076 6.27814 6.32507 6.49026 6.51656 6.67929 6.70314 7.48078 7.57598 8.08080 8.11040 8.26842 9.39348 9.93012 10.28069 11.31212 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.008265 B = 0.004079 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3386.811133 B = 6863.327638 C = 9595.641500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 C -0.140 4.140 4 C -0.123 4.123 5 C 0.136 3.864 6 H 0.096 0.904 7 C 0.143 3.857 8 N -0.732 5.732 9 C -0.245 4.245 10 H 0.072 0.928 11 C -0.009 4.009 12 N -0.930 5.930 13 Si 0.906 3.094 14 H -0.280 1.280 15 H -0.291 1.291 16 H -0.291 1.291 17 N -0.695 5.695 18 C 0.569 3.431 19 O -0.523 6.523 20 C -0.142 4.142 21 C -0.027 4.027 22 C -0.094 4.094 23 C 0.252 3.748 24 N -0.326 5.326 25 N -0.006 5.006 26 N -0.107 5.107 27 N -0.304 5.304 28 C 0.174 3.826 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.048 0.952 32 H 0.073 0.927 33 H 0.040 0.960 34 H 0.076 0.924 35 H 0.043 0.957 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.026 0.974 39 H 0.036 0.964 40 H 0.385 0.615 41 H 0.256 0.744 42 H 0.404 0.596 43 H 0.165 0.835 44 H 0.174 0.826 45 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.689 -0.664 -7.364 15.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 C -0.197 4.197 4 C -0.162 4.162 5 C 0.032 3.968 6 H 0.114 0.886 7 C 0.015 3.985 8 N -0.377 5.377 9 C -0.376 4.376 10 H 0.090 0.910 11 C -0.205 4.205 12 N -0.578 5.578 13 Si 0.737 3.263 14 H -0.205 1.205 15 H -0.218 1.218 16 H -0.218 1.218 17 N -0.345 5.345 18 C 0.353 3.647 19 O -0.401 6.401 20 C -0.151 4.151 21 C -0.054 4.054 22 C -0.117 4.117 23 C -0.002 4.002 24 N -0.185 5.185 25 N 0.000 5.000 26 N -0.091 5.091 27 N -0.083 5.083 28 C 0.043 3.957 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.091 0.909 33 H 0.059 0.941 34 H 0.095 0.905 35 H 0.063 0.937 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.044 0.956 39 H 0.054 0.946 40 H 0.219 0.781 41 H 0.065 0.935 42 H 0.241 0.759 43 H 0.182 0.818 44 H 0.191 0.809 45 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -13.511 0.181 -8.963 16.214 hybrid contribution 0.763 -0.636 1.516 1.813 sum -12.748 -0.455 -7.447 14.770 Atomic orbital electron populations 1.21871 0.96272 1.01006 1.01287 1.21147 0.94335 0.97276 0.98380 1.21848 1.03005 0.94926 0.99911 1.22038 0.94723 1.00821 0.98616 1.21502 0.94180 0.95584 0.85519 0.88632 1.20987 0.87069 0.97499 0.92955 1.42355 1.01376 1.76332 1.17626 1.19242 0.90318 1.33781 0.94260 0.91043 1.24737 0.96560 1.01855 0.97396 1.69663 1.08617 1.53485 1.26051 0.86142 0.79989 0.78445 0.81712 1.20514 1.21814 1.21820 1.45836 1.68290 1.13628 1.06774 1.17398 0.77853 0.86951 0.82473 1.90831 1.50138 1.14933 1.84178 1.19840 1.06517 0.95252 0.93484 1.21566 0.91731 0.91567 1.00496 1.20336 1.02589 1.02694 0.86109 1.23125 0.97333 0.82419 0.97304 1.75179 1.25204 1.22809 0.95295 1.77869 1.06415 0.93415 1.22256 1.82859 1.26165 1.17696 0.82330 1.48786 1.41399 1.09036 1.09036 1.21713 0.92686 0.98198 0.83053 0.93009 0.93205 0.93290 0.90919 0.94118 0.90529 0.93748 0.91758 0.90801 0.95643 0.94638 0.78056 0.93453 0.75927 0.81762 0.80871 0.78710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.19 37.16 0.34 -1.07 16 2 C -0.09 -1.03 2.38 -90.62 -0.22 -1.24 16 3 C -0.14 -1.68 8.03 37.16 0.30 -1.38 16 4 C -0.12 -1.35 4.36 -26.73 -0.12 -1.46 16 5 C 0.14 1.81 2.33 -67.93 -0.16 1.65 16 6 H 0.10 1.47 5.92 -51.93 -0.31 1.16 16 7 C 0.14 2.36 5.82 -4.04 -0.02 2.33 16 8 N -0.73 -16.04 5.43 -59.91 -0.33 -16.36 16 9 C -0.25 -6.20 9.99 -15.06 -0.15 -6.35 16 10 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 11 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 12 N -0.93 -26.19 13.06 55.49 0.72 -25.46 16 13 Si 0.91 21.04 29.55 -169.99 -5.02 16.02 16 14 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 15 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 17 N -0.69 -8.27 4.42 -54.80 -0.24 -8.51 16 18 C 0.57 6.83 6.32 -12.40 -0.08 6.76 16 19 O -0.52 -7.28 11.24 5.30 0.06 -7.22 16 20 C -0.14 -1.45 5.84 -105.34 -0.62 -2.07 16 21 C -0.03 -0.23 9.53 -39.18 -0.37 -0.61 16 22 C -0.09 -0.84 10.09 -39.47 -0.40 -1.24 16 23 C 0.25 3.10 8.02 -156.27 -1.25 1.84 16 24 N -0.33 -4.68 12.26 31.10 0.38 -4.30 16 25 N -0.01 -0.10 13.35 60.35 0.81 0.71 16 26 N -0.11 -1.54 13.99 60.35 0.84 -0.70 16 27 N -0.30 -3.81 3.92 -12.06 -0.05 -3.86 16 28 C 0.17 1.85 10.77 -16.51 -0.18 1.68 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.87 5.19 -51.93 -0.27 0.60 16 33 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.08 1.07 4.75 -51.93 -0.25 0.82 16 35 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.39 9.01 7.33 -40.82 -0.30 8.71 16 41 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 42 H 0.40 4.35 6.64 -40.82 -0.27 4.07 16 43 H 0.16 1.05 6.44 -52.49 -0.34 0.71 16 44 H 0.17 1.07 8.06 -52.49 -0.42 0.64 16 45 H 0.20 1.85 7.57 -52.49 -0.40 1.45 16 LS Contribution 368.05 15.07 5.55 5.55 Total: -1.00 -31.00 368.05 -6.20 -37.20 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -5.90 Total: 8.43 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -3.02 Total: -1.49 kcal Atomic # 7 Polarization: -60.63 SS G_CDS: 2.14 Total: -58.49 kcal Atomic # 8 Polarization: -7.28 SS G_CDS: 0.06 Total: -7.22 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.00 -6.20 -37.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268108937.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.769 kcal (2) G-P(sol) polarization free energy of solvation -31.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds