Wall clock time and date at job start Tue Mar 31 2020 18:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46862 * 2 1 4 4 C 1.52999 * 109.46823 * 119.99692 * 2 1 3 5 5 C 1.53004 * 109.46989 * 174.99871 * 4 2 1 6 6 H 1.09000 * 109.46662 * 55.00238 * 5 4 2 7 7 C 1.52996 * 109.47336 * 174.99994 * 5 4 2 8 8 N 1.46498 * 109.47059 * 175.00083 * 7 5 4 9 9 C 1.36943 * 119.99752 * 179.72430 * 8 7 5 10 10 H 1.08002 * 119.99793 * 0.27665 * 9 8 7 11 11 C 1.38811 * 120.00012 * 180.27737 * 9 8 7 12 12 N 1.31624 * 119.99698 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00072 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47159 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.47290 * 120.00044 * 13 11 9 16 16 H 1.48503 * 109.47163 * 240.00049 * 13 11 9 17 17 N 1.46494 * 109.47171 * 295.00630 * 5 4 2 18 18 C 1.34779 * 120.00531 * 84.99693 * 17 5 4 19 19 O 1.21574 * 119.99758 * 0.02562 * 18 17 5 20 20 C 1.47690 * 120.00233 * 179.97438 * 18 17 5 21 21 C 1.41598 * 120.03274 * 0.02562 * 20 18 17 22 22 C 1.35782 * 119.54716 * 179.97438 * 21 20 18 23 23 C 1.40854 * 119.39230 * 359.97438 * 22 21 20 24 24 N 1.32488 * 133.41700 * 180.02562 * 23 22 21 25 25 N 1.28533 * 110.24456 * 180.02562 * 24 23 22 26 26 N 1.28987 * 110.84044 * 359.97438 * 25 24 23 27 27 N 1.36932 * 119.93323 * 0.02562 * 23 22 21 28 28 C 1.35493 * 120.83903 * 359.74119 * 27 23 22 29 29 H 1.08997 * 109.47247 * 299.99954 * 1 2 3 30 30 H 1.09000 * 109.47485 * 60.00459 * 1 2 3 31 31 H 1.09006 * 109.47094 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47247 * 240.00046 * 2 1 3 33 33 H 1.08997 * 109.47152 * 59.99987 * 3 2 1 34 34 H 1.09001 * 109.46642 * 179.97438 * 3 2 1 35 35 H 1.08993 * 109.46832 * 299.99688 * 3 2 1 36 36 H 1.08997 * 109.47199 * 55.00713 * 4 2 1 37 37 H 1.08995 * 109.47432 * 294.99745 * 4 2 1 38 38 H 1.09004 * 109.47066 * 55.00351 * 7 5 4 39 39 H 1.08994 * 109.46974 * 295.00498 * 7 5 4 40 40 H 0.97001 * 120.00384 * 0.02562 * 8 7 5 41 41 H 0.96999 * 119.99739 * 180.02562 * 12 11 9 42 42 H 0.97009 * 119.99912 * 264.99313 * 17 5 4 43 43 H 1.07997 * 120.22708 * 359.95533 * 21 20 18 44 44 H 1.08002 * 120.30074 * 180.02562 * 22 21 20 45 45 H 1.08002 * 119.81927 * 180.25606 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.8310 1.1880 6 1 3.9953 0.1612 1.0528 7 6 4.0851 -1.4393 2.4919 8 7 5.5304 -1.6550 2.3875 9 6 6.2209 -2.1889 3.4427 10 1 5.6993 -2.4552 4.3502 11 6 7.5913 -2.3879 3.3460 12 7 8.2270 -2.0629 2.2402 13 14 8.5331 -3.1169 4.7850 14 1 7.5942 -3.3943 5.9015 15 1 9.1842 -4.3823 4.3605 16 1 9.5696 -2.1542 5.2369 17 7 3.9479 -1.6871 0.0627 18 6 4.0651 -1.1630 -1.1735 19 8 3.8534 0.0204 -1.3545 20 6 4.4519 -2.0260 -2.3079 21 6 4.6992 -3.4043 -2.0977 22 6 5.0538 -4.1887 -3.1477 23 6 5.1690 -3.6170 -4.4299 24 7 5.4871 -4.1056 -5.6196 25 7 5.4562 -3.1748 -6.5054 26 7 5.1255 -2.0468 -5.9744 27 7 4.9244 -2.2814 -4.6069 28 6 4.5659 -1.4964 -3.5623 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.6766 1.9563 0.8899 34 1 3.1299 1.4425 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6054 -1.7197 1.2952 37 1 1.7516 -0.1582 2.1370 38 1 3.5877 -2.3923 2.6722 39 1 3.8779 -0.7593 3.3181 40 1 5.9989 -1.4155 1.5727 41 1 9.1845 -2.2024 2.1725 42 1 4.1173 -2.6313 0.2072 43 1 4.6068 -3.8286 -1.1089 44 1 5.2448 -5.2416 -3.0013 45 1 4.3729 -0.4458 -3.7213 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268108937.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:59 Heat of formation + Delta-G solvation = 98.555463 kcal Electronic energy + Delta-G solvation = -28749.530060 eV Core-core repulsion = 24804.672904 eV Total energy + Delta-G solvation = -3944.857157 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.63082 -41.56612 -39.63554 -37.92369 -36.40692 -35.52797 -34.92876 -33.56602 -32.72886 -31.72740 -30.55323 -27.89970 -27.12906 -26.75793 -25.53299 -24.61548 -24.06000 -22.84428 -21.76951 -20.77830 -20.10344 -19.25510 -18.62405 -18.34623 -18.12673 -17.29657 -16.89118 -16.55957 -16.15317 -15.81745 -15.46943 -15.18580 -15.12186 -14.73827 -14.64521 -14.44551 -14.36390 -14.09790 -13.81761 -13.59563 -13.20252 -12.98523 -12.93203 -12.90635 -12.81589 -12.80152 -12.49301 -12.35078 -12.27887 -12.01595 -11.84396 -11.61560 -11.41128 -11.29668 -11.15806 -11.03558 -10.90818 -9.98141 -9.80232 -8.94269 -7.90429 -5.17922 -1.06402 -0.66232 0.40755 0.70510 1.51126 1.51873 1.53994 1.61631 2.03842 2.28962 2.47149 2.60007 2.92225 3.28683 3.43209 3.46467 3.65444 3.69505 3.84854 4.01724 4.05622 4.15182 4.31019 4.41732 4.43250 4.48767 4.60479 4.65683 4.72943 4.87025 4.91767 4.95291 4.97146 4.99961 5.07490 5.08449 5.16460 5.23387 5.29187 5.45011 5.58004 5.60971 5.62579 5.70732 6.31245 6.51693 7.05733 7.14914 7.40247 8.14302 8.37129 9.32233 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.008265 B = 0.004079 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3386.811133 B = 6863.327638 C = 9595.641500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.090 4.090 3 C -0.137 4.137 4 C -0.115 4.115 5 C 0.148 3.852 6 H 0.072 0.928 7 C 0.143 3.857 8 N -0.741 5.741 9 C -0.236 4.236 10 H 0.078 0.922 11 C -0.068 4.068 12 N -0.965 5.965 13 Si 0.962 3.038 14 H -0.266 1.266 15 H -0.295 1.295 16 H -0.303 1.303 17 N -0.691 5.691 18 C 0.570 3.430 19 O -0.543 6.543 20 C -0.134 4.134 21 C -0.016 4.016 22 C -0.084 4.084 23 C 0.242 3.758 24 N -0.345 5.345 25 N -0.024 5.024 26 N -0.128 5.128 27 N -0.306 5.306 28 C 0.167 3.833 29 H 0.057 0.943 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.047 0.953 34 H 0.054 0.946 35 H 0.040 0.960 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.045 0.955 39 H 0.035 0.965 40 H 0.376 0.624 41 H 0.248 0.752 42 H 0.412 0.588 43 H 0.192 0.808 44 H 0.206 0.794 45 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.369 -1.869 -5.721 16.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.108 4.108 3 C -0.194 4.194 4 C -0.153 4.153 5 C 0.043 3.957 6 H 0.090 0.910 7 C 0.016 3.984 8 N -0.384 5.384 9 C -0.368 4.368 10 H 0.096 0.904 11 C -0.260 4.260 12 N -0.616 5.616 13 Si 0.793 3.207 14 H -0.190 1.190 15 H -0.222 1.222 16 H -0.231 1.231 17 N -0.342 5.342 18 C 0.355 3.645 19 O -0.422 6.422 20 C -0.143 4.143 21 C -0.042 4.042 22 C -0.106 4.106 23 C -0.011 4.011 24 N -0.206 5.206 25 N -0.017 5.017 26 N -0.111 5.111 27 N -0.084 5.084 28 C 0.036 3.964 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.059 0.941 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.063 0.937 39 H 0.053 0.947 40 H 0.208 0.792 41 H 0.057 0.943 42 H 0.250 0.750 43 H 0.209 0.791 44 H 0.223 0.777 45 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -15.245 -1.034 -7.297 16.933 hybrid contribution 1.193 -0.196 1.113 1.643 sum -14.052 -1.230 -6.184 15.402 Atomic orbital electron populations 1.21824 0.94786 1.01803 1.01617 1.21093 0.95483 0.96275 0.97979 1.21796 1.01518 0.95971 1.00084 1.21977 0.92562 1.01945 0.98849 1.21255 0.95659 0.94262 0.84484 0.90951 1.21145 0.84203 0.98419 0.94609 1.42512 1.03522 1.75943 1.16470 1.19617 0.90536 1.31677 0.94961 0.90402 1.25383 0.97693 1.03559 0.99410 1.69796 1.08211 1.55766 1.27843 0.85237 0.78635 0.77112 0.79732 1.19000 1.22244 1.23072 1.45737 1.68214 1.13843 1.06392 1.17540 0.77404 0.86815 0.82754 1.90839 1.50912 1.15964 1.84488 1.19748 1.06098 0.95927 0.92497 1.21849 0.90331 0.90466 1.01573 1.20762 1.01311 1.04141 0.84410 1.23596 0.97261 0.82363 0.97871 1.75079 1.26173 1.23225 0.96082 1.77826 1.07141 0.93796 1.22970 1.82778 1.27217 1.17742 0.83393 1.48756 1.41416 1.09455 1.08726 1.21861 0.93023 0.98535 0.82935 0.92386 0.93236 0.92248 0.91834 0.93430 0.92741 0.94063 0.90010 0.90115 0.93711 0.94727 0.79156 0.94318 0.75020 0.79067 0.77695 0.78128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.19 71.98 0.66 -1.71 16 2 C -0.09 -1.81 2.38 -10.79 -0.03 -1.83 16 3 C -0.14 -3.16 8.03 71.98 0.58 -2.58 16 4 C -0.11 -2.20 4.36 30.60 0.13 -2.07 16 5 C 0.15 3.67 2.33 44.99 0.10 3.78 16 6 H 0.07 2.19 5.92 -2.39 -0.01 2.18 16 7 C 0.14 4.38 5.82 86.38 0.50 4.88 16 8 N -0.74 -31.40 5.43 -343.46 -1.87 -33.27 16 9 C -0.24 -11.56 9.99 84.03 0.84 -10.73 16 10 H 0.08 3.66 7.83 -2.91 -0.02 3.64 16 11 C -0.07 -3.54 5.50 84.86 0.47 -3.07 16 12 N -0.97 -54.39 13.06 21.65 0.28 -54.11 16 13 Si 0.96 42.76 29.55 68.60 2.03 44.79 16 14 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 15 H -0.30 -13.17 7.11 99.48 0.71 -12.47 16 16 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 17 N -0.69 -15.08 4.42 -445.56 -1.97 -17.05 16 18 C 0.57 12.97 6.32 86.74 0.55 13.51 16 19 O -0.54 -14.91 11.24 -3.95 -0.04 -14.95 16 20 C -0.13 -2.53 5.84 -20.33 -0.12 -2.65 16 21 C -0.02 -0.23 9.53 22.53 0.21 -0.01 16 22 C -0.08 -1.28 10.09 22.34 0.23 -1.05 16 23 C 0.24 5.71 8.02 134.15 1.08 6.79 16 24 N -0.35 -9.89 12.26 -55.52 -0.68 -10.57 16 25 N -0.02 -0.75 13.35 37.02 0.49 -0.26 16 26 N -0.13 -3.76 13.99 37.02 0.52 -3.24 16 27 N -0.31 -7.59 3.92 -192.06 -0.75 -8.34 16 28 C 0.17 3.47 10.77 83.75 0.90 4.37 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.06 1.41 5.19 -2.39 -0.01 1.40 16 33 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.05 1.52 4.75 -2.39 -0.01 1.50 16 35 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 39 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.38 17.31 7.33 -92.71 -0.68 16.63 16 41 H 0.25 13.81 8.31 -92.71 -0.77 13.04 16 42 H 0.41 7.68 6.64 -92.70 -0.62 7.06 16 43 H 0.19 1.70 6.44 -2.91 -0.02 1.68 16 44 H 0.21 1.79 8.06 -2.91 -0.02 1.76 16 45 H 0.20 3.83 7.57 -2.91 -0.02 3.81 16 Total: -1.00 -66.98 368.05 3.87 -63.11 By element: Atomic # 1 Polarization: 26.50 SS G_CDS: -0.25 Total: 26.25 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: 6.11 Total: 7.63 kcal Atomic # 7 Polarization: -122.86 SS G_CDS: -3.98 Total: -126.83 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: -0.04 Total: -14.95 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -66.98 3.87 -63.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268108937.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.667 kcal (2) G-P(sol) polarization free energy of solvation -66.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds