Wall clock time and date at job start Tue Mar 31 2020 16:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34782 * 120.00062 * 2 1 4 4 O 1.21280 * 119.99532 * 179.97438 * 3 2 1 5 5 C 1.50699 * 120.00041 * 359.97438 * 3 2 1 6 6 C 1.50704 * 109.46980 * 180.02562 * 5 3 2 7 7 C 1.32571 * 120.00151 * 125.00167 * 6 5 3 8 8 C 1.47801 * 120.00236 * 179.97438 * 7 6 5 9 9 C 1.39552 * 120.10975 * 359.72004 * 8 7 6 10 10 C 1.37926 * 119.87670 * 179.77022 * 9 8 7 11 11 C 1.38581 * 120.11764 * 0.48515 * 10 9 8 12 12 F 1.35102 * 119.88364 * 179.76608 * 11 10 9 13 13 C 1.38571 * 120.23283 * 359.78880 * 11 10 9 14 14 C 1.37926 * 120.11576 * 359.95514 * 13 11 10 15 15 C 1.46505 * 119.99887 * 179.97438 * 2 1 3 16 16 H 1.08997 * 110.64066 * 181.69299 * 15 2 1 17 17 C 1.55150 * 110.87224 * 304.94042 * 15 2 1 18 18 C 1.55128 * 101.49032 * 82.76506 * 17 15 2 19 19 N 1.47428 * 104.71818 * 37.29110 * 18 17 15 20 20 C 1.36935 * 125.64541 * 155.81809 * 19 18 17 21 21 H 1.08003 * 120.00026 * 191.70594 * 20 19 18 22 22 C 1.38814 * 120.00160 * 11.70058 * 20 19 18 23 23 N 1.31614 * 120.00132 * 205.07712 * 22 20 19 24 24 Si 1.86799 * 119.99595 * 24.80313 * 22 20 19 25 25 H 1.48503 * 109.47229 * 270.26991 * 24 22 20 26 26 H 1.48492 * 109.47492 * 30.27195 * 24 22 20 27 27 H 1.48498 * 109.47012 * 150.27626 * 24 22 20 28 28 C 1.47021 * 108.70406 * 335.55579 * 19 18 17 29 29 H 1.09001 * 109.47092 * 270.00737 * 1 2 3 30 30 H 1.09002 * 109.46673 * 30.00312 * 1 2 3 31 31 H 1.08998 * 109.47588 * 150.00219 * 1 2 3 32 32 H 1.09001 * 109.46758 * 300.00035 * 5 3 2 33 33 H 1.08994 * 109.47248 * 60.00064 * 5 3 2 34 34 H 1.07995 * 119.99541 * 304.99581 * 6 5 3 35 35 H 1.08001 * 119.99874 * 359.97438 * 7 6 5 36 36 H 1.07996 * 120.06106 * 0.02562 * 9 8 7 37 37 H 1.08004 * 119.94075 * 180.27568 * 10 9 8 38 38 H 1.07994 * 119.94189 * 179.97438 * 13 11 10 39 39 H 1.08002 * 120.05874 * 179.97438 * 14 13 11 40 40 H 1.09004 * 111.00587 * 201.00971 * 17 15 2 41 41 H 1.09007 * 111.00644 * 324.81637 * 17 15 2 42 42 H 1.09004 * 110.49597 * 278.45413 * 18 17 15 43 43 H 1.08994 * 110.34625 * 156.05603 * 18 17 15 44 44 H 0.97001 * 120.00124 * 354.37100 * 23 22 20 45 45 H 1.09001 * 109.88080 * 120.70176 * 28 19 18 46 46 H 1.09002 * 109.88352 * 241.86488 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1671 0.0005 5 6 1.3854 2.4723 -0.0006 6 6 2.3648 3.6178 -0.0011 7 6 2.2950 4.5491 -0.9419 8 6 3.2552 5.6728 -0.9421 9 6 4.2324 5.7588 0.0504 10 6 5.1290 6.8069 0.0428 11 6 5.0542 7.7789 -0.9421 12 9 5.9318 8.8060 -0.9422 13 6 4.0821 7.7012 -1.9266 14 6 3.1840 6.6545 -1.9314 15 6 2.1975 -1.2688 0.0006 16 1 3.2725 -1.0918 0.0306 17 6 1.7548 -2.1621 1.1893 18 6 0.4727 -2.8231 0.6185 19 7 0.7774 -3.0652 -0.8034 20 6 0.1851 -4.0113 -1.5967 21 1 0.6019 -4.2411 -2.5661 22 6 -0.9512 -4.6750 -1.1547 23 7 -1.2405 -5.8696 -1.6254 24 14 -2.0655 -3.8759 0.1138 25 1 -1.6118 -4.2504 1.4773 26 1 -2.0100 -2.3998 -0.0383 27 1 -3.4607 -4.3423 -0.0890 28 6 1.8182 -2.1186 -1.2304 29 1 -0.3633 0.0001 1.0277 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3634 -0.8900 -0.5138 32 1 0.7591 2.5298 -0.8908 33 1 0.7584 2.5303 0.8891 34 1 3.1233 3.6799 0.7651 35 1 1.5366 4.4868 -1.7083 36 1 4.2892 5.0038 0.8205 37 1 5.8885 6.8720 0.8079 38 1 4.0279 8.4615 -2.6917 39 1 2.4265 6.5951 -2.6989 40 1 2.5140 -2.9094 1.4205 41 1 1.5240 -1.5583 2.0671 42 1 -0.3791 -2.1497 0.7146 43 1 0.2723 -3.7649 1.1293 44 1 -0.7068 -6.2518 -2.3396 45 1 2.6916 -2.6642 -1.5875 46 1 1.4320 -1.4748 -2.0207 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269250996.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:50:43 Heat of formation + Delta-G solvation = -2.987138 kcal Electronic energy + Delta-G solvation = -27392.132120 eV Core-core repulsion = 23390.659033 eV Total energy + Delta-G solvation = -4001.473087 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -49.21167 -40.19662 -39.41607 -37.86922 -35.10262 -34.61657 -32.42799 -31.56385 -31.15899 -29.62090 -28.65418 -27.28005 -26.30419 -23.86918 -23.61097 -22.76327 -21.30433 -20.50201 -19.64482 -18.75839 -18.09817 -17.50954 -17.21789 -16.73034 -16.32494 -16.05498 -15.90687 -15.41033 -15.01350 -14.80592 -14.47353 -13.95237 -13.89925 -13.67417 -13.49578 -13.29891 -13.04877 -12.99260 -12.74282 -12.67081 -12.36137 -12.09680 -11.95423 -11.75522 -11.64212 -11.27745 -11.19366 -11.11476 -11.00826 -10.81762 -10.38026 -10.07671 -9.72425 -9.59245 -9.51162 -9.29718 -8.55461 -8.49622 -8.32889 -7.13369 -6.36738 -3.24546 0.43233 0.87436 2.05849 2.65110 3.09938 3.33879 3.40333 3.42358 3.58935 3.90510 4.25247 4.32538 4.49391 4.53490 4.55413 4.75831 4.83855 4.91455 4.96364 5.03339 5.10643 5.18909 5.23649 5.26557 5.37022 5.44421 5.52606 5.57032 5.63269 5.63900 5.74495 5.86075 5.86958 5.89253 5.94799 6.00583 6.21639 6.28694 6.30053 6.44392 6.49989 6.51359 6.53497 6.68508 6.82865 7.50073 7.66551 8.21671 8.29780 8.99558 9.54053 10.20855 11.11394 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.031330 B = 0.001965 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.501629 B =14244.964267 C =14390.781865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.597 5.597 3 C 0.516 3.484 4 O -0.545 6.545 5 C -0.114 4.114 6 C -0.105 4.105 7 C -0.130 4.130 8 C -0.055 4.055 9 C -0.087 4.087 10 C -0.150 4.150 11 C 0.090 3.910 12 F -0.142 7.142 13 C -0.152 4.152 14 C -0.084 4.084 15 C 0.125 3.875 16 H 0.106 0.894 17 C -0.139 4.139 18 C 0.096 3.904 19 N -0.607 5.607 20 C -0.328 4.328 21 H 0.075 0.925 22 C -0.021 4.021 23 N -0.920 5.920 24 Si 1.066 2.934 25 H -0.294 1.294 26 H -0.287 1.287 27 H -0.299 1.299 28 C 0.127 3.873 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.107 0.893 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.081 0.919 41 H 0.069 0.931 42 H 0.037 0.963 43 H 0.060 0.940 44 H 0.263 0.737 45 H 0.039 0.961 46 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.424 25.886 4.585 27.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.330 5.330 3 C 0.304 3.696 4 O -0.423 6.423 5 C -0.153 4.153 6 C -0.123 4.123 7 C -0.148 4.148 8 C -0.055 4.055 9 C -0.105 4.105 10 C -0.168 4.168 11 C 0.071 3.929 12 F -0.121 7.121 13 C -0.171 4.171 14 C -0.102 4.102 15 C 0.021 3.979 16 H 0.124 0.876 17 C -0.178 4.178 18 C -0.029 4.029 19 N -0.335 5.335 20 C -0.455 4.455 21 H 0.093 0.907 22 C -0.222 4.222 23 N -0.561 5.561 24 Si 0.899 3.101 25 H -0.222 1.222 26 H -0.214 1.214 27 H -0.227 1.227 28 C 0.000 4.000 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.125 0.875 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.155 0.845 37 H 0.154 0.846 38 H 0.153 0.847 39 H 0.153 0.847 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.054 0.946 43 H 0.078 0.922 44 H 0.073 0.927 45 H 0.057 0.943 46 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 5.711 25.585 5.419 26.769 hybrid contribution 1.382 0.390 -1.036 1.771 sum 7.094 25.975 4.383 27.281 Atomic orbital electron populations 1.22172 0.79263 1.04569 1.02020 1.47846 1.07248 1.05615 1.72260 1.20470 0.87954 0.85042 0.76167 1.90678 1.13902 1.87392 1.50356 1.20813 0.98221 0.91204 1.05080 1.22984 0.97665 0.93133 0.98551 1.21561 0.99025 0.94523 0.99666 1.19104 0.95984 0.95202 0.95249 1.21247 0.93620 0.97290 0.98322 1.21098 1.01473 0.94906 0.99350 1.17818 0.90572 0.86869 0.97649 1.91497 1.67302 1.56969 1.96303 1.21079 0.96051 1.00647 0.99291 1.21135 0.98273 0.92760 0.98016 1.22133 0.97000 0.82237 0.96488 0.87633 1.23105 0.99472 0.98573 0.96667 1.22276 0.95151 0.98834 0.86598 1.44833 1.44406 1.38695 1.05537 1.20019 1.08943 1.14496 1.02058 0.90737 1.25867 0.96973 0.95630 1.03728 1.70893 1.46098 1.11697 1.27443 0.83833 0.76207 0.74868 0.75217 1.22214 1.21427 1.22733 1.21664 0.93095 0.91083 0.94125 0.92590 0.91555 0.88222 0.88159 0.87536 0.86114 0.85999 0.84542 0.84633 0.84680 0.84723 0.90065 0.91271 0.94558 0.92201 0.92657 0.94341 0.95011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.82 8.34 59.84 0.50 1.32 16 2 N -0.60 -8.69 2.83 -171.84 -0.49 -9.17 16 3 C 0.52 7.09 7.67 -10.98 -0.08 7.00 16 4 O -0.55 -9.27 15.40 5.56 0.09 -9.19 16 5 C -0.11 -1.06 4.70 -29.03 -0.14 -1.19 16 6 C -0.11 -0.98 8.18 -36.21 -0.30 -1.28 16 7 C -0.13 -1.11 9.52 -37.58 -0.36 -1.47 16 8 C -0.06 -0.49 5.87 -105.01 -0.62 -1.11 16 9 C -0.09 -0.76 9.40 -39.21 -0.37 -1.13 16 10 C -0.15 -1.28 10.01 -39.57 -0.40 -1.68 16 11 C 0.09 0.83 7.30 -39.33 -0.29 0.54 16 12 F -0.14 -1.41 17.26 2.25 0.04 -1.37 16 13 C -0.15 -1.21 10.01 -39.57 -0.40 -1.61 16 14 C -0.08 -0.65 9.78 -39.21 -0.38 -1.04 16 15 C 0.12 2.08 3.57 -66.10 -0.24 1.84 16 16 H 0.11 1.77 6.99 -51.93 -0.36 1.41 16 17 C -0.14 -2.28 6.55 -24.47 -0.16 -2.44 16 18 C 0.10 1.95 3.82 -2.41 -0.01 1.94 16 19 N -0.61 -14.12 2.86 -169.93 -0.49 -14.60 16 20 C -0.33 -9.07 10.44 -15.06 -0.16 -9.23 16 21 H 0.07 2.21 8.06 -52.48 -0.42 1.79 16 22 C -0.02 -0.61 5.42 -17.43 -0.09 -0.71 16 23 N -0.92 -28.22 13.70 55.49 0.76 -27.46 16 24 Si 1.07 25.27 24.68 -169.99 -4.20 21.07 16 25 H -0.29 -6.65 6.57 56.52 0.37 -6.28 16 26 H -0.29 -6.08 5.85 56.52 0.33 -5.75 16 27 H -0.30 -7.28 7.11 56.52 0.40 -6.88 16 28 C 0.13 2.52 6.24 -3.07 -0.02 2.50 16 29 H 0.06 0.65 7.99 -51.93 -0.41 0.24 16 30 H 0.07 0.66 6.44 -51.93 -0.33 0.33 16 31 H 0.10 1.68 4.84 -51.93 -0.25 1.43 16 32 H 0.10 0.79 7.07 -51.93 -0.37 0.42 16 33 H 0.11 0.78 8.11 -51.93 -0.42 0.36 16 34 H 0.12 1.15 6.03 -52.49 -0.32 0.83 16 35 H 0.12 0.86 7.87 -52.49 -0.41 0.45 16 36 H 0.14 1.05 6.16 -52.49 -0.32 0.73 16 37 H 0.14 0.93 8.06 -52.48 -0.42 0.50 16 38 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 39 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 40 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 41 H 0.07 0.99 8.14 -51.92 -0.42 0.57 16 42 H 0.04 0.72 3.05 -51.93 -0.16 0.56 16 43 H 0.06 1.32 6.11 -51.93 -0.32 1.01 16 44 H 0.26 8.02 8.73 -40.82 -0.36 7.66 16 45 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.03 0.65 8.04 -51.93 -0.42 0.23 16 LS Contribution 367.18 15.07 5.53 5.53 Total: -1.00 -32.80 367.18 -8.56 -41.36 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -6.31 Total: 1.55 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: -3.50 Total: -7.73 kcal Atomic # 7 Polarization: -51.02 SS G_CDS: -0.21 Total: -51.23 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.09 Total: -9.19 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 0.04 Total: -1.37 kcal Atomic # 14 Polarization: 25.27 SS G_CDS: -4.20 Total: 21.07 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.80 -8.56 -41.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269250996.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.376 kcal (2) G-P(sol) polarization free energy of solvation -32.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds