Wall clock time and date at job start Tue Mar 31 2020 16:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34782 * 120.00062 * 2 1 4 4 O 1.21280 * 119.99532 * 179.97438 * 3 2 1 5 5 C 1.50699 * 120.00041 * 359.97438 * 3 2 1 6 6 C 1.50704 * 109.46980 * 180.02562 * 5 3 2 7 7 C 1.32571 * 120.00151 * 125.00167 * 6 5 3 8 8 C 1.47801 * 120.00236 * 179.97438 * 7 6 5 9 9 C 1.39552 * 120.10975 * 359.72004 * 8 7 6 10 10 C 1.37926 * 119.87670 * 179.77022 * 9 8 7 11 11 C 1.38581 * 120.11764 * 0.48515 * 10 9 8 12 12 F 1.35102 * 119.88364 * 179.76608 * 11 10 9 13 13 C 1.38571 * 120.23283 * 359.78880 * 11 10 9 14 14 C 1.37926 * 120.11576 * 359.95514 * 13 11 10 15 15 C 1.46505 * 119.99887 * 179.97438 * 2 1 3 16 16 H 1.08997 * 110.64066 * 181.69299 * 15 2 1 17 17 C 1.55150 * 110.87224 * 304.94042 * 15 2 1 18 18 C 1.55128 * 101.49032 * 82.76506 * 17 15 2 19 19 N 1.47428 * 104.71818 * 37.29110 * 18 17 15 20 20 C 1.36935 * 125.64541 * 155.81809 * 19 18 17 21 21 H 1.08003 * 120.00026 * 191.70594 * 20 19 18 22 22 C 1.38814 * 120.00160 * 11.70058 * 20 19 18 23 23 N 1.31614 * 120.00132 * 205.07712 * 22 20 19 24 24 Si 1.86799 * 119.99595 * 24.80313 * 22 20 19 25 25 H 1.48503 * 109.47229 * 270.26991 * 24 22 20 26 26 H 1.48492 * 109.47492 * 30.27195 * 24 22 20 27 27 H 1.48498 * 109.47012 * 150.27626 * 24 22 20 28 28 C 1.47021 * 108.70406 * 335.55579 * 19 18 17 29 29 H 1.09001 * 109.47092 * 270.00737 * 1 2 3 30 30 H 1.09002 * 109.46673 * 30.00312 * 1 2 3 31 31 H 1.08998 * 109.47588 * 150.00219 * 1 2 3 32 32 H 1.09001 * 109.46758 * 300.00035 * 5 3 2 33 33 H 1.08994 * 109.47248 * 60.00064 * 5 3 2 34 34 H 1.07995 * 119.99541 * 304.99581 * 6 5 3 35 35 H 1.08001 * 119.99874 * 359.97438 * 7 6 5 36 36 H 1.07996 * 120.06106 * 0.02562 * 9 8 7 37 37 H 1.08004 * 119.94075 * 180.27568 * 10 9 8 38 38 H 1.07994 * 119.94189 * 179.97438 * 13 11 10 39 39 H 1.08002 * 120.05874 * 179.97438 * 14 13 11 40 40 H 1.09004 * 111.00587 * 201.00971 * 17 15 2 41 41 H 1.09007 * 111.00644 * 324.81637 * 17 15 2 42 42 H 1.09004 * 110.49597 * 278.45413 * 18 17 15 43 43 H 1.08994 * 110.34625 * 156.05603 * 18 17 15 44 44 H 0.97001 * 120.00124 * 354.37100 * 23 22 20 45 45 H 1.09001 * 109.88080 * 120.70176 * 28 19 18 46 46 H 1.09002 * 109.88352 * 241.86488 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1671 0.0005 5 6 1.3854 2.4723 -0.0006 6 6 2.3648 3.6178 -0.0011 7 6 2.2950 4.5491 -0.9419 8 6 3.2552 5.6728 -0.9421 9 6 4.2324 5.7588 0.0504 10 6 5.1290 6.8069 0.0428 11 6 5.0542 7.7789 -0.9421 12 9 5.9318 8.8060 -0.9422 13 6 4.0821 7.7012 -1.9266 14 6 3.1840 6.6545 -1.9314 15 6 2.1975 -1.2688 0.0006 16 1 3.2725 -1.0918 0.0306 17 6 1.7548 -2.1621 1.1893 18 6 0.4727 -2.8231 0.6185 19 7 0.7774 -3.0652 -0.8034 20 6 0.1851 -4.0113 -1.5967 21 1 0.6019 -4.2411 -2.5661 22 6 -0.9512 -4.6750 -1.1547 23 7 -1.2405 -5.8696 -1.6254 24 14 -2.0655 -3.8759 0.1138 25 1 -1.6118 -4.2504 1.4773 26 1 -2.0100 -2.3998 -0.0383 27 1 -3.4607 -4.3423 -0.0890 28 6 1.8182 -2.1186 -1.2304 29 1 -0.3633 0.0001 1.0277 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3634 -0.8900 -0.5138 32 1 0.7591 2.5298 -0.8908 33 1 0.7584 2.5303 0.8891 34 1 3.1233 3.6799 0.7651 35 1 1.5366 4.4868 -1.7083 36 1 4.2892 5.0038 0.8205 37 1 5.8885 6.8720 0.8079 38 1 4.0279 8.4615 -2.6917 39 1 2.4265 6.5951 -2.6989 40 1 2.5140 -2.9094 1.4205 41 1 1.5240 -1.5583 2.0671 42 1 -0.3791 -2.1497 0.7146 43 1 0.2723 -3.7649 1.1293 44 1 -0.7068 -6.2518 -2.3396 45 1 2.6916 -2.6642 -1.5875 46 1 1.4320 -1.4748 -2.0207 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269250996.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:50:40 Heat of formation + Delta-G solvation = -22.057898 kcal Electronic energy + Delta-G solvation = -27392.959090 eV Core-core repulsion = 23390.659033 eV Total energy + Delta-G solvation = -4002.300057 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -49.91628 -41.34494 -40.05947 -39.24874 -36.03951 -35.80118 -34.28715 -32.16987 -32.09074 -31.12347 -30.09748 -28.05916 -27.54223 -25.53855 -24.32434 -23.53530 -22.70030 -21.94284 -20.44577 -19.85784 -19.52445 -18.75275 -18.29956 -17.58914 -17.21842 -17.07552 -16.70009 -16.60950 -16.29445 -15.87243 -15.44255 -15.41032 -15.09314 -14.61241 -14.50680 -14.43571 -14.12516 -13.84379 -13.65345 -13.54382 -13.48769 -13.43574 -13.28584 -12.99233 -12.79795 -12.66339 -12.42729 -12.35565 -12.20755 -11.77625 -11.72464 -11.52069 -11.21331 -11.07757 -10.68557 -10.64064 -10.11201 -9.67994 -9.12636 -8.98072 -8.62153 -5.42839 -0.21658 0.27477 1.39739 1.43218 1.56034 1.63937 1.73272 2.06229 2.58012 2.79051 3.06407 3.27429 3.35640 3.60922 3.64076 3.71991 3.76716 3.86746 3.92918 4.15908 4.18850 4.22098 4.29718 4.37354 4.40234 4.43439 4.54096 4.58319 4.69271 4.73701 4.77634 4.85777 4.91393 4.96699 4.98238 5.01535 5.07927 5.14860 5.17952 5.24090 5.30853 5.55475 5.59290 5.65466 5.82594 5.92782 6.11043 6.45609 6.84089 7.17567 7.47946 8.13636 8.86321 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.031330 B = 0.001965 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.501629 B =14244.964267 C =14390.781865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.600 5.600 3 C 0.513 3.487 4 O -0.583 6.583 5 C -0.103 4.103 6 C -0.121 4.121 7 C -0.123 4.123 8 C -0.070 4.070 9 C -0.097 4.097 10 C -0.157 4.157 11 C 0.071 3.929 12 F -0.150 7.150 13 C -0.155 4.155 14 C -0.083 4.083 15 C 0.138 3.862 16 H 0.104 0.896 17 C -0.125 4.125 18 C 0.091 3.909 19 N -0.622 5.622 20 C -0.318 4.318 21 H 0.035 0.965 22 C -0.080 4.080 23 N -0.957 5.957 24 Si 1.105 2.895 25 H -0.274 1.274 26 H -0.245 1.245 27 H -0.310 1.310 28 C 0.127 3.873 29 H 0.079 0.921 30 H 0.102 0.898 31 H 0.062 0.938 32 H 0.122 0.878 33 H 0.135 0.865 34 H 0.113 0.887 35 H 0.141 0.859 36 H 0.142 0.858 37 H 0.146 0.854 38 H 0.153 0.847 39 H 0.159 0.841 40 H 0.082 0.918 41 H 0.101 0.899 42 H 0.057 0.943 43 H 0.041 0.959 44 H 0.245 0.755 45 H 0.025 0.975 46 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.335 28.974 6.193 30.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.332 5.332 3 C 0.304 3.696 4 O -0.464 6.464 5 C -0.142 4.142 6 C -0.139 4.139 7 C -0.141 4.141 8 C -0.070 4.070 9 C -0.115 4.115 10 C -0.176 4.176 11 C 0.052 3.948 12 F -0.129 7.129 13 C -0.173 4.173 14 C -0.101 4.101 15 C 0.033 3.967 16 H 0.122 0.878 17 C -0.164 4.164 18 C -0.033 4.033 19 N -0.350 5.350 20 C -0.446 4.446 21 H 0.053 0.947 22 C -0.273 4.273 23 N -0.601 5.601 24 Si 0.930 3.070 25 H -0.201 1.201 26 H -0.169 1.169 27 H -0.239 1.239 28 C 0.001 3.999 29 H 0.098 0.902 30 H 0.120 0.880 31 H 0.081 0.919 32 H 0.140 0.860 33 H 0.153 0.847 34 H 0.130 0.870 35 H 0.159 0.841 36 H 0.160 0.840 37 H 0.164 0.836 38 H 0.171 0.829 39 H 0.177 0.823 40 H 0.101 0.899 41 H 0.120 0.880 42 H 0.074 0.926 43 H 0.059 0.941 44 H 0.055 0.945 45 H 0.043 0.957 46 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 4.652 28.723 7.036 29.936 hybrid contribution 1.845 -0.547 -1.652 2.537 sum 6.498 28.176 5.383 29.413 Atomic orbital electron populations 1.22291 0.78038 1.04501 1.03526 1.47900 1.07940 1.04947 1.72416 1.21265 0.87704 0.85963 0.74675 1.90669 1.15860 1.87921 1.51930 1.20847 0.97981 0.87985 1.07398 1.22990 0.98136 0.93760 0.99008 1.21747 0.98923 0.93911 0.99518 1.19343 0.96245 0.95807 0.95629 1.21407 0.93842 0.97482 0.98762 1.21271 1.01831 0.94845 0.99635 1.18093 0.91142 0.87058 0.98543 1.91472 1.67685 1.57355 1.96415 1.21343 0.95533 1.01168 0.99264 1.21430 0.98485 0.92051 0.98137 1.21809 0.97253 0.83075 0.94570 0.87794 1.23053 0.97419 0.98586 0.97378 1.22449 0.97760 0.98620 0.84444 1.44813 1.44628 1.38670 1.06872 1.19852 1.08654 1.14996 1.01129 0.94675 1.27287 0.98564 0.95284 1.06146 1.71038 1.46848 1.13652 1.28566 0.83427 0.73340 0.76444 0.73807 1.20076 1.16908 1.23906 1.21711 0.91489 0.90819 0.95871 0.90230 0.87997 0.91924 0.86001 0.84714 0.86956 0.84092 0.84040 0.83622 0.82926 0.82319 0.89915 0.88012 0.92585 0.94131 0.94521 0.95739 0.95569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.26 8.34 127.77 1.07 2.33 16 2 N -0.60 -15.36 2.83 -815.98 -2.31 -17.67 16 3 C 0.51 12.42 7.67 87.66 0.67 13.10 16 4 O -0.58 -18.73 15.40 -3.03 -0.05 -18.78 16 5 C -0.10 -1.46 4.70 29.10 0.14 -1.32 16 6 C -0.12 -1.89 8.18 24.53 0.20 -1.69 16 7 C -0.12 -1.73 9.52 23.65 0.23 -1.50 16 8 C -0.07 -1.09 5.87 -20.12 -0.12 -1.21 16 9 C -0.10 -1.58 9.40 22.51 0.21 -1.37 16 10 C -0.16 -2.58 10.01 22.28 0.22 -2.35 16 11 C 0.07 1.24 7.30 22.43 0.16 1.40 16 12 F -0.15 -2.91 17.26 44.97 0.78 -2.13 16 13 C -0.15 -2.20 10.01 22.28 0.22 -1.98 16 14 C -0.08 -1.09 9.78 22.51 0.22 -0.87 16 15 C 0.14 4.29 3.57 46.17 0.16 4.46 16 16 H 0.10 3.34 6.99 -2.39 -0.02 3.32 16 17 C -0.13 -3.74 6.55 32.06 0.21 -3.53 16 18 C 0.09 3.47 3.82 86.93 0.33 3.80 16 19 N -0.62 -28.78 2.86 -691.55 -1.98 -30.76 16 20 C -0.32 -18.09 10.44 84.03 0.88 -17.21 16 21 H 0.04 2.21 8.06 -2.91 -0.02 2.19 16 22 C -0.08 -4.62 5.42 84.86 0.46 -4.16 16 23 N -0.96 -60.85 13.70 21.65 0.30 -60.56 16 24 Si 1.11 49.86 24.68 68.60 1.69 51.55 16 25 H -0.27 -11.47 6.57 99.48 0.65 -10.81 16 26 H -0.24 -9.24 5.85 99.48 0.58 -8.66 16 27 H -0.31 -14.52 7.11 99.48 0.71 -13.81 16 28 C 0.13 5.02 6.24 86.73 0.54 5.56 16 29 H 0.08 1.37 7.99 -2.39 -0.02 1.35 16 30 H 0.10 1.46 6.44 -2.39 -0.02 1.44 16 31 H 0.06 1.88 4.84 -2.39 -0.01 1.86 16 32 H 0.12 1.24 7.07 -2.39 -0.02 1.22 16 33 H 0.14 1.19 8.11 -2.39 -0.02 1.17 16 34 H 0.11 1.93 6.03 -2.91 -0.02 1.91 16 35 H 0.14 1.39 7.87 -2.91 -0.02 1.36 16 36 H 0.14 2.06 6.16 -2.91 -0.02 2.04 16 37 H 0.15 1.93 8.06 -2.91 -0.02 1.90 16 38 H 0.15 1.53 8.06 -2.91 -0.02 1.50 16 39 H 0.16 1.23 8.06 -2.91 -0.02 1.20 16 40 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 41 H 0.10 2.43 8.14 -2.38 -0.02 2.41 16 42 H 0.06 1.96 3.05 -2.38 -0.01 1.96 16 43 H 0.04 1.71 6.11 -2.39 -0.01 1.70 16 44 H 0.25 15.84 8.73 -92.71 -0.81 15.03 16 45 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.03 1.06 8.04 -2.39 -0.02 1.04 16 Total: -1.00 -75.16 367.18 5.03 -70.13 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: 0.78 Total: 14.77 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: 5.81 Total: -6.56 kcal Atomic # 7 Polarization: -105.00 SS G_CDS: -3.99 Total: -108.98 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.05 Total: -18.78 kcal Atomic # 9 Polarization: -2.91 SS G_CDS: 0.78 Total: -2.13 kcal Atomic # 14 Polarization: 49.86 SS G_CDS: 1.69 Total: 51.55 kcal Total: -75.16 5.03 -70.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269250996.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.071 kcal (2) G-P(sol) polarization free energy of solvation -75.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds