Wall clock time and date at job start Tue Mar 31 2020 16:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34777 * 120.00264 * 2 1 4 4 O 1.21283 * 119.99750 * 180.02562 * 3 2 1 5 5 C 1.50702 * 119.99928 * 0.28128 * 3 2 1 6 6 C 1.50700 * 109.46869 * 179.72354 * 5 3 2 7 7 C 1.32577 * 120.00085 * 125.00036 * 6 5 3 8 8 C 1.47795 * 120.00155 * 179.97438 * 7 6 5 9 9 C 1.39543 * 120.11326 * 359.71830 * 8 7 6 10 10 C 1.37936 * 119.88115 * 179.77151 * 9 8 7 11 11 C 1.38574 * 120.11419 * 0.48827 * 10 9 8 12 12 F 1.35097 * 119.88276 * 179.77079 * 11 10 9 13 13 C 1.38573 * 120.23244 * 359.78518 * 11 10 9 14 14 C 1.37929 * 120.11882 * 359.96346 * 13 11 10 15 15 C 1.46499 * 119.99537 * 180.02562 * 2 1 3 16 16 H 1.09003 * 110.64162 * 178.31021 * 15 2 1 17 17 C 1.55151 * 110.72384 * 54.97298 * 15 2 1 18 18 C 1.54910 * 101.58317 * 277.14039 * 17 15 2 19 19 N 1.47422 * 104.82860 * 322.98803 * 18 17 15 20 20 C 1.36942 * 125.64719 * 204.16409 * 19 18 17 21 21 H 1.08001 * 119.99583 * 179.97438 * 20 19 18 22 22 C 1.38807 * 120.00107 * 359.96066 * 20 19 18 23 23 N 1.31621 * 119.99795 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 120.00093 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47066 * 89.99997 * 24 22 20 26 26 H 1.48503 * 109.47017 * 209.99873 * 24 22 20 27 27 H 1.48497 * 109.47215 * 330.00034 * 24 22 20 28 28 C 1.47022 * 108.70473 * 24.13051 * 19 18 17 29 29 H 1.08998 * 109.46921 * 89.99095 * 1 2 3 30 30 H 1.08994 * 109.46996 * 209.99677 * 1 2 3 31 31 H 1.09001 * 109.46578 * 329.99540 * 1 2 3 32 32 H 1.09004 * 109.46965 * 299.72211 * 5 3 2 33 33 H 1.08994 * 109.46990 * 59.72065 * 5 3 2 34 34 H 1.07994 * 120.00093 * 304.99370 * 6 5 3 35 35 H 1.08001 * 119.99631 * 359.97438 * 7 6 5 36 36 H 1.07998 * 120.06247 * 0.02681 * 9 8 7 37 37 H 1.08002 * 119.94159 * 180.23372 * 10 9 8 38 38 H 1.08002 * 119.93898 * 179.97438 * 13 11 10 39 39 H 1.07999 * 120.05845 * 180.02562 * 14 13 11 40 40 H 1.09002 * 111.00815 * 35.21503 * 17 15 2 41 41 H 1.08998 * 111.00546 * 159.06306 * 17 15 2 42 42 H 1.09004 * 110.36447 * 204.15504 * 18 17 15 43 43 H 1.08994 * 110.46517 * 81.87441 * 18 17 15 44 44 H 0.97000 * 119.99591 * 180.02562 * 23 22 20 45 45 H 1.09008 * 109.88121 * 239.52492 * 28 19 18 46 46 H 1.09001 * 109.88201 * 118.35740 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3518 1.1671 -0.0005 5 6 1.3855 2.4723 0.0064 6 6 2.3649 3.6176 0.0119 7 6 2.2952 4.5540 -0.9240 8 6 3.2553 5.6776 -0.9183 9 6 4.2326 5.7584 0.0745 10 6 5.1292 6.8065 0.0725 11 6 5.0544 7.7836 -0.9072 12 9 5.9320 8.8107 -0.9020 13 6 4.0822 7.7112 -1.8921 14 6 3.1840 6.6645 -1.9023 15 6 2.1974 -1.2688 -0.0006 16 1 3.2726 -1.0918 -0.0306 17 6 1.7506 -2.1601 -1.1893 18 6 0.4717 -2.8220 -0.6182 19 7 0.7744 -3.0624 0.8045 20 6 0.1819 -4.0085 1.5976 21 1 0.4752 -4.1060 2.6325 22 6 -0.7956 -4.8419 1.0717 23 7 -1.1527 -4.7231 -0.1896 24 14 -1.6033 -6.1330 2.1535 25 1 -2.8028 -5.5509 2.8074 26 1 -2.0079 -7.2940 1.3206 27 1 -0.6413 -6.5804 3.1925 28 6 1.8182 -2.1187 1.2304 29 1 -0.3633 0.0002 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3632 0.8900 0.5139 32 1 0.7588 2.5344 -0.8833 33 1 0.7590 2.5257 0.8966 34 1 3.1236 3.6757 0.7783 35 1 1.5367 4.4957 -1.6907 36 1 4.2894 4.9994 0.8407 37 1 5.8884 6.8679 0.8383 38 1 4.0280 8.4756 -2.6531 39 1 2.4270 6.6088 -2.6706 40 1 1.5192 -1.5552 -2.0660 41 1 2.5075 -2.9091 -1.4222 42 1 0.2723 -3.7645 -1.1281 43 1 -0.3812 -2.1505 -0.7164 44 1 -1.8361 -5.3052 -0.5570 45 1 2.6909 -2.6668 1.5856 46 1 1.4350 -1.4745 2.0218 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269250998.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:51:23 Heat of formation + Delta-G solvation = -3.625344 kcal Electronic energy + Delta-G solvation = -27219.978401 eV Core-core repulsion = 23218.477639 eV Total energy + Delta-G solvation = -4001.500762 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 2.48 seconds Orbital eigenvalues (eV) -49.17807 -40.01384 -39.35757 -37.55877 -35.02559 -34.43515 -32.24829 -31.52288 -30.99947 -29.28496 -28.12276 -27.15643 -26.01510 -24.32411 -23.63677 -22.71596 -20.86667 -20.19124 -19.57898 -18.59758 -18.05304 -17.11606 -16.95768 -16.67093 -16.29899 -15.87442 -15.66297 -15.32283 -14.82285 -14.67867 -14.05387 -13.90474 -13.83876 -13.74500 -13.37644 -13.02086 -12.91744 -12.72620 -12.56423 -12.26018 -12.13305 -11.88376 -11.79047 -11.60723 -11.55923 -11.13592 -11.09888 -10.92978 -10.84158 -10.38350 -10.28117 -10.15683 -9.90817 -9.59541 -9.47237 -9.45895 -8.70546 -8.29883 -8.26928 -6.90245 -5.71580 -3.13640 0.47960 0.91308 2.11682 2.78518 3.26238 3.35728 3.41580 3.43110 3.47698 3.94314 4.30432 4.38049 4.44029 4.53203 4.67643 4.81937 4.89049 5.00841 5.13758 5.22579 5.35345 5.39418 5.42179 5.46385 5.52910 5.57118 5.68048 5.69359 5.78187 5.80964 5.89358 5.90966 5.97446 6.18728 6.27639 6.33700 6.35580 6.49691 6.53158 6.56169 6.57999 6.68249 6.99817 7.41304 7.57079 7.68741 7.79612 8.29447 8.36556 9.15787 9.76211 10.40481 11.31851 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.038886 B = 0.001799 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.887756 B =15559.448931 C =15690.669019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.594 5.594 3 C 0.514 3.486 4 O -0.549 6.549 5 C -0.114 4.114 6 C -0.102 4.102 7 C -0.133 4.133 8 C -0.054 4.054 9 C -0.087 4.087 10 C -0.149 4.149 11 C 0.089 3.911 12 F -0.142 7.142 13 C -0.152 4.152 14 C -0.085 4.085 15 C 0.125 3.875 16 H 0.099 0.901 17 C -0.154 4.154 18 C 0.144 3.856 19 N -0.603 5.603 20 C -0.223 4.223 21 H 0.077 0.923 22 C -0.010 4.010 23 N -0.922 5.922 24 Si 0.914 3.086 25 H -0.289 1.289 26 H -0.290 1.290 27 H -0.282 1.282 28 C 0.127 3.873 29 H 0.055 0.945 30 H 0.103 0.897 31 H 0.060 0.940 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.060 0.940 41 H 0.071 0.929 42 H 0.105 0.895 43 H 0.022 0.978 44 H 0.252 0.748 45 H 0.032 0.968 46 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.602 22.343 -3.127 23.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.326 5.326 3 C 0.302 3.698 4 O -0.428 6.428 5 C -0.153 4.153 6 C -0.120 4.120 7 C -0.151 4.151 8 C -0.054 4.054 9 C -0.105 4.105 10 C -0.168 4.168 11 C 0.070 3.930 12 F -0.121 7.121 13 C -0.171 4.171 14 C -0.103 4.103 15 C 0.021 3.979 16 H 0.117 0.883 17 C -0.194 4.194 18 C 0.020 3.980 19 N -0.330 5.330 20 C -0.351 4.351 21 H 0.095 0.905 22 C -0.206 4.206 23 N -0.570 5.570 24 Si 0.745 3.255 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.207 1.207 28 C 0.000 4.000 29 H 0.073 0.927 30 H 0.121 0.879 31 H 0.079 0.921 32 H 0.117 0.883 33 H 0.125 0.875 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.155 0.845 37 H 0.154 0.846 38 H 0.153 0.847 39 H 0.152 0.848 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.123 0.877 43 H 0.040 0.960 44 H 0.063 0.937 45 H 0.050 0.950 46 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 6.107 22.189 -3.132 23.227 hybrid contribution -0.415 -0.482 0.525 0.825 sum 5.692 21.708 -2.607 22.593 Atomic orbital electron populations 1.22125 0.79105 1.04264 1.02015 1.47840 1.07367 1.05577 1.71791 1.20444 0.87943 0.85093 0.76370 1.90669 1.13942 1.87442 1.50723 1.20812 0.98186 0.91313 1.05020 1.23013 0.97543 0.93054 0.98400 1.21544 0.99137 0.94567 0.99843 1.19108 0.95931 0.95151 0.95207 1.21259 0.93613 0.97334 0.98313 1.21099 1.01467 0.94840 0.99379 1.17812 0.90613 0.86862 0.97723 1.91493 1.67314 1.57004 1.96298 1.21073 0.96071 1.00655 0.99281 1.21126 0.98291 0.92771 0.98084 1.22145 0.96460 0.82181 0.97074 0.88286 1.23344 1.01557 0.98260 0.96234 1.22122 0.90504 1.00691 0.84684 1.44549 1.42729 1.37651 1.08025 1.19070 1.14823 1.08343 0.92841 0.90516 1.24777 0.99412 0.99869 0.96515 1.69796 1.33989 1.41173 1.12075 0.86077 0.79262 0.81029 0.79144 1.21663 1.21661 1.20726 1.21639 0.92760 0.91428 0.94143 0.92689 0.87871 0.92116 0.88297 0.87514 0.86133 0.86031 0.84509 0.84644 0.84723 0.84756 0.92099 0.91069 0.87696 0.96043 0.93720 0.94980 0.95571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.96 8.34 59.85 0.50 1.46 16 2 N -0.59 -9.31 2.82 -171.84 -0.49 -9.80 16 3 C 0.51 7.59 7.67 -10.98 -0.08 7.51 16 4 O -0.55 -9.91 15.40 5.55 0.09 -9.83 16 5 C -0.11 -1.16 4.70 -29.03 -0.14 -1.29 16 6 C -0.10 -1.02 8.18 -36.21 -0.30 -1.32 16 7 C -0.13 -1.20 9.52 -37.58 -0.36 -1.55 16 8 C -0.05 -0.50 5.87 -105.02 -0.62 -1.11 16 9 C -0.09 -0.80 9.40 -39.21 -0.37 -1.17 16 10 C -0.15 -1.33 10.01 -39.57 -0.40 -1.73 16 11 C 0.09 0.84 7.30 -39.33 -0.29 0.55 16 12 F -0.14 -1.44 17.26 2.25 0.04 -1.41 16 13 C -0.15 -1.25 10.01 -39.57 -0.40 -1.64 16 14 C -0.08 -0.68 9.78 -39.21 -0.38 -1.06 16 15 C 0.12 2.25 3.58 -66.10 -0.24 2.01 16 16 H 0.10 1.82 6.99 -51.93 -0.36 1.45 16 17 C -0.15 -2.88 6.53 -24.59 -0.16 -3.04 16 18 C 0.14 3.26 5.00 -2.53 -0.01 3.25 16 19 N -0.60 -14.57 2.97 -170.07 -0.50 -15.07 16 20 C -0.22 -5.94 10.27 -15.06 -0.15 -6.09 16 21 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 22 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 23 N -0.92 -25.65 10.09 55.49 0.56 -25.09 16 24 Si 0.91 21.40 29.55 -169.99 -5.02 16.38 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 28 C 0.13 2.61 6.24 -3.07 -0.02 2.59 16 29 H 0.05 0.73 7.99 -51.93 -0.41 0.31 16 30 H 0.10 1.86 5.19 -51.93 -0.27 1.59 16 31 H 0.06 0.66 6.43 -51.93 -0.33 0.33 16 32 H 0.10 0.83 7.78 -51.93 -0.40 0.43 16 33 H 0.11 0.91 7.40 -51.93 -0.38 0.52 16 34 H 0.12 1.25 6.03 -52.49 -0.32 0.93 16 35 H 0.12 0.89 7.87 -52.49 -0.41 0.48 16 36 H 0.14 1.13 6.16 -52.49 -0.32 0.81 16 37 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 38 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 39 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.11 2.74 5.87 -51.93 -0.30 2.43 16 43 H 0.02 0.49 5.54 -51.93 -0.29 0.20 16 44 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 45 H 0.03 0.67 8.14 -51.92 -0.42 0.25 16 46 H 0.03 0.54 8.04 -51.93 -0.42 0.13 16 LS Contribution 373.36 15.07 5.63 5.63 Total: -1.00 -30.81 373.36 -9.52 -40.33 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -6.32 Total: 1.87 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: -3.50 Total: -3.01 kcal Atomic # 7 Polarization: -49.53 SS G_CDS: -0.43 Total: -49.96 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.09 Total: -9.83 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.41 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.81 -9.52 -40.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269250998.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.701 kcal (2) G-P(sol) polarization free energy of solvation -30.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.48 seconds