Wall clock time and date at job start Tue Mar 31 2020 16:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34777 * 120.00264 * 2 1 4 4 O 1.21283 * 119.99750 * 180.02562 * 3 2 1 5 5 C 1.50702 * 119.99928 * 0.28128 * 3 2 1 6 6 C 1.50700 * 109.46869 * 179.72354 * 5 3 2 7 7 C 1.32577 * 120.00085 * 125.00036 * 6 5 3 8 8 C 1.47795 * 120.00155 * 179.97438 * 7 6 5 9 9 C 1.39543 * 120.11326 * 359.71830 * 8 7 6 10 10 C 1.37936 * 119.88115 * 179.77151 * 9 8 7 11 11 C 1.38574 * 120.11419 * 0.48827 * 10 9 8 12 12 F 1.35097 * 119.88276 * 179.77079 * 11 10 9 13 13 C 1.38573 * 120.23244 * 359.78518 * 11 10 9 14 14 C 1.37929 * 120.11882 * 359.96346 * 13 11 10 15 15 C 1.46499 * 119.99537 * 180.02562 * 2 1 3 16 16 H 1.09003 * 110.64162 * 178.31021 * 15 2 1 17 17 C 1.55151 * 110.72384 * 54.97298 * 15 2 1 18 18 C 1.54910 * 101.58317 * 277.14039 * 17 15 2 19 19 N 1.47422 * 104.82860 * 322.98803 * 18 17 15 20 20 C 1.36942 * 125.64719 * 204.16409 * 19 18 17 21 21 H 1.08001 * 119.99583 * 179.97438 * 20 19 18 22 22 C 1.38807 * 120.00107 * 359.96066 * 20 19 18 23 23 N 1.31621 * 119.99795 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 120.00093 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47066 * 89.99997 * 24 22 20 26 26 H 1.48503 * 109.47017 * 209.99873 * 24 22 20 27 27 H 1.48497 * 109.47215 * 330.00034 * 24 22 20 28 28 C 1.47022 * 108.70473 * 24.13051 * 19 18 17 29 29 H 1.08998 * 109.46921 * 89.99095 * 1 2 3 30 30 H 1.08994 * 109.46996 * 209.99677 * 1 2 3 31 31 H 1.09001 * 109.46578 * 329.99540 * 1 2 3 32 32 H 1.09004 * 109.46965 * 299.72211 * 5 3 2 33 33 H 1.08994 * 109.46990 * 59.72065 * 5 3 2 34 34 H 1.07994 * 120.00093 * 304.99370 * 6 5 3 35 35 H 1.08001 * 119.99631 * 359.97438 * 7 6 5 36 36 H 1.07998 * 120.06247 * 0.02681 * 9 8 7 37 37 H 1.08002 * 119.94159 * 180.23372 * 10 9 8 38 38 H 1.08002 * 119.93898 * 179.97438 * 13 11 10 39 39 H 1.07999 * 120.05845 * 180.02562 * 14 13 11 40 40 H 1.09002 * 111.00815 * 35.21503 * 17 15 2 41 41 H 1.08998 * 111.00546 * 159.06306 * 17 15 2 42 42 H 1.09004 * 110.36447 * 204.15504 * 18 17 15 43 43 H 1.08994 * 110.46517 * 81.87441 * 18 17 15 44 44 H 0.97000 * 119.99591 * 180.02562 * 23 22 20 45 45 H 1.09008 * 109.88121 * 239.52492 * 28 19 18 46 46 H 1.09001 * 109.88201 * 118.35740 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3518 1.1671 -0.0005 5 6 1.3855 2.4723 0.0064 6 6 2.3649 3.6176 0.0119 7 6 2.2952 4.5540 -0.9240 8 6 3.2553 5.6776 -0.9183 9 6 4.2326 5.7584 0.0745 10 6 5.1292 6.8065 0.0725 11 6 5.0544 7.7836 -0.9072 12 9 5.9320 8.8107 -0.9020 13 6 4.0822 7.7112 -1.8921 14 6 3.1840 6.6645 -1.9023 15 6 2.1974 -1.2688 -0.0006 16 1 3.2726 -1.0918 -0.0306 17 6 1.7506 -2.1601 -1.1893 18 6 0.4717 -2.8220 -0.6182 19 7 0.7744 -3.0624 0.8045 20 6 0.1819 -4.0085 1.5976 21 1 0.4752 -4.1060 2.6325 22 6 -0.7956 -4.8419 1.0717 23 7 -1.1527 -4.7231 -0.1896 24 14 -1.6033 -6.1330 2.1535 25 1 -2.8028 -5.5509 2.8074 26 1 -2.0079 -7.2940 1.3206 27 1 -0.6413 -6.5804 3.1925 28 6 1.8182 -2.1187 1.2304 29 1 -0.3633 0.0002 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3632 0.8900 0.5139 32 1 0.7588 2.5344 -0.8833 33 1 0.7590 2.5257 0.8966 34 1 3.1236 3.6757 0.7783 35 1 1.5367 4.4957 -1.6907 36 1 4.2894 4.9994 0.8407 37 1 5.8884 6.8679 0.8383 38 1 4.0280 8.4756 -2.6531 39 1 2.4270 6.6088 -2.6706 40 1 1.5192 -1.5552 -2.0660 41 1 2.5075 -2.9091 -1.4222 42 1 0.2723 -3.7645 -1.1281 43 1 -0.3812 -2.1505 -0.7164 44 1 -1.8361 -5.3052 -0.5570 45 1 2.6909 -2.6668 1.5856 46 1 1.4350 -1.4745 2.0218 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269250998.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:51:14 Heat of formation + Delta-G solvation = -18.740358 kcal Electronic energy + Delta-G solvation = -27220.633837 eV Core-core repulsion = 23218.477639 eV Total energy + Delta-G solvation = -4002.156198 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 5.89 seconds Orbital eigenvalues (eV) -49.90906 -41.25118 -40.03981 -39.04595 -35.94584 -35.78860 -33.98197 -32.15420 -31.92480 -30.95777 -29.62132 -28.02473 -27.45164 -26.05147 -24.31850 -23.49498 -22.10988 -21.95737 -20.40389 -19.80437 -18.93275 -18.73638 -18.23618 -17.51430 -17.12335 -16.87618 -16.67844 -16.60179 -16.34761 -15.62810 -15.54770 -15.15578 -14.72647 -14.49771 -14.46149 -14.13370 -13.85740 -13.83654 -13.61783 -13.51873 -13.46707 -13.28502 -13.19644 -12.93140 -12.77381 -12.63866 -12.36069 -12.26420 -12.02938 -11.93457 -11.78609 -11.76387 -11.39988 -11.08076 -10.72203 -10.60791 -10.10204 -9.60510 -8.97333 -8.85551 -7.74992 -5.18724 -0.20874 0.28407 1.41026 1.49156 1.50006 1.58561 1.65928 2.11678 2.51109 2.80122 3.28208 3.35217 3.59901 3.65156 3.72916 3.77893 3.92283 3.93806 4.04783 4.17905 4.26364 4.31081 4.34309 4.37929 4.46559 4.58214 4.65749 4.72178 4.74234 4.75364 4.91568 4.97450 4.97778 5.02331 5.05477 5.15574 5.17115 5.25015 5.32062 5.47986 5.59402 5.66078 5.69808 5.83481 5.85347 5.93896 6.33904 6.51492 7.13725 7.20386 7.79495 8.43202 9.25922 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.038886 B = 0.001799 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.887756 B =15559.448931 C =15690.669019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.598 5.598 3 C 0.511 3.489 4 O -0.586 6.586 5 C -0.102 4.102 6 C -0.122 4.122 7 C -0.120 4.120 8 C -0.070 4.070 9 C -0.098 4.098 10 C -0.158 4.158 11 C 0.071 3.929 12 F -0.150 7.150 13 C -0.154 4.154 14 C -0.081 4.081 15 C 0.137 3.863 16 H 0.098 0.902 17 C -0.140 4.140 18 C 0.152 3.848 19 N -0.618 5.618 20 C -0.237 4.237 21 H 0.076 0.924 22 C -0.061 4.061 23 N -0.943 5.943 24 Si 0.976 3.024 25 H -0.286 1.286 26 H -0.295 1.295 27 H -0.275 1.275 28 C 0.128 3.872 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.099 0.901 32 H 0.126 0.874 33 H 0.128 0.872 34 H 0.109 0.891 35 H 0.145 0.855 36 H 0.139 0.861 37 H 0.145 0.855 38 H 0.154 0.846 39 H 0.161 0.839 40 H 0.081 0.919 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.020 0.980 44 H 0.247 0.753 45 H 0.027 0.973 46 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.806 24.040 -3.655 24.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.329 5.329 3 C 0.302 3.698 4 O -0.466 6.466 5 C -0.141 4.141 6 C -0.141 4.141 7 C -0.138 4.138 8 C -0.070 4.070 9 C -0.116 4.116 10 C -0.176 4.176 11 C 0.052 3.948 12 F -0.129 7.129 13 C -0.172 4.172 14 C -0.099 4.099 15 C 0.032 3.968 16 H 0.116 0.884 17 C -0.179 4.179 18 C 0.027 3.973 19 N -0.345 5.345 20 C -0.366 4.366 21 H 0.094 0.906 22 C -0.253 4.253 23 N -0.593 5.593 24 Si 0.805 3.195 25 H -0.213 1.213 26 H -0.221 1.221 27 H -0.200 1.200 28 C 0.002 3.998 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.117 0.883 32 H 0.144 0.856 33 H 0.146 0.854 34 H 0.127 0.873 35 H 0.162 0.838 36 H 0.157 0.843 37 H 0.163 0.837 38 H 0.172 0.828 39 H 0.179 0.821 40 H 0.099 0.901 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.037 0.963 44 H 0.057 0.943 45 H 0.045 0.955 46 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 5.315 23.915 -3.650 24.769 hybrid contribution -0.115 -0.942 0.697 1.177 sum 5.200 22.973 -2.953 23.739 Atomic orbital electron populations 1.22115 0.78000 1.04178 1.02755 1.47894 1.07937 1.05022 1.72066 1.21279 0.87732 0.86010 0.74820 1.90656 1.15824 1.87966 1.52192 1.20827 0.97979 0.88083 1.07233 1.22968 0.98125 0.93854 0.99123 1.21751 0.98884 0.93688 0.99455 1.19337 0.96182 0.95833 0.95666 1.21403 0.93959 0.97512 0.98759 1.21258 1.01816 0.94830 0.99731 1.18084 0.91172 0.86977 0.98560 1.91470 1.67686 1.57351 1.96402 1.21352 0.95458 1.01195 0.99213 1.21436 0.98467 0.91907 0.98102 1.21825 0.96656 0.83097 0.95189 0.88424 1.23184 0.99415 0.98306 0.97012 1.21904 0.92359 0.99110 0.83911 1.44736 1.43266 1.37879 1.08628 1.19361 1.14995 1.08955 0.93252 0.90634 1.25515 1.00252 1.01811 0.97771 1.70029 1.34244 1.41750 1.13264 0.85116 0.78331 0.78453 0.77609 1.21278 1.22106 1.20010 1.21692 0.91546 0.91142 0.95397 0.91527 0.91820 0.88266 0.85643 0.85416 0.87272 0.83782 0.84318 0.83744 0.82785 0.82104 0.90069 0.91243 0.91390 0.96251 0.94307 0.95485 0.95634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.87 8.34 127.77 1.07 2.94 16 2 N -0.60 -17.66 2.82 -815.96 -2.30 -19.96 16 3 C 0.51 14.03 7.67 87.66 0.67 14.70 16 4 O -0.59 -20.51 15.40 -3.04 -0.05 -20.55 16 5 C -0.10 -1.73 4.70 29.10 0.14 -1.59 16 6 C -0.12 -2.18 8.18 24.53 0.20 -1.98 16 7 C -0.12 -1.81 9.52 23.65 0.23 -1.58 16 8 C -0.07 -1.15 5.87 -20.12 -0.12 -1.27 16 9 C -0.10 -1.73 9.40 22.51 0.21 -1.52 16 10 C -0.16 -2.74 10.01 22.28 0.22 -2.52 16 11 C 0.07 1.28 7.30 22.43 0.16 1.44 16 12 F -0.15 -2.97 17.26 44.97 0.78 -2.19 16 13 C -0.15 -2.22 10.01 22.28 0.22 -2.00 16 14 C -0.08 -1.09 9.78 22.51 0.22 -0.87 16 15 C 0.14 4.84 3.58 46.18 0.17 5.00 16 16 H 0.10 3.53 6.99 -2.39 -0.02 3.51 16 17 C -0.14 -5.12 6.53 31.98 0.21 -4.91 16 18 C 0.15 6.92 5.00 86.86 0.43 7.36 16 19 N -0.62 -30.29 2.97 -691.99 -2.05 -32.35 16 20 C -0.24 -12.80 10.27 84.03 0.86 -11.93 16 21 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 22 C -0.06 -3.30 5.49 84.86 0.47 -2.83 16 23 N -0.94 -53.48 10.09 21.65 0.22 -53.26 16 24 Si 0.98 44.32 29.55 68.60 2.03 46.34 16 25 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 26 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 27 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 28 C 0.13 5.30 6.24 86.73 0.54 5.84 16 29 H 0.07 1.59 7.99 -2.39 -0.02 1.57 16 30 H 0.06 2.24 5.19 -2.39 -0.01 2.22 16 31 H 0.10 1.80 6.43 -2.39 -0.02 1.78 16 32 H 0.13 1.50 7.78 -2.38 -0.02 1.48 16 33 H 0.13 1.64 7.40 -2.39 -0.02 1.63 16 34 H 0.11 2.16 6.03 -2.91 -0.02 2.15 16 35 H 0.14 1.48 7.87 -2.91 -0.02 1.46 16 36 H 0.14 2.28 6.16 -2.91 -0.02 2.26 16 37 H 0.14 2.08 8.06 -2.91 -0.02 2.05 16 38 H 0.15 1.54 8.06 -2.91 -0.02 1.51 16 39 H 0.16 1.22 8.06 -2.91 -0.02 1.20 16 40 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 41 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 42 H 0.07 3.65 5.87 -2.38 -0.01 3.63 16 43 H 0.02 0.90 5.54 -2.39 -0.01 0.88 16 44 H 0.25 13.68 8.31 -92.71 -0.77 12.90 16 45 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 46 H 0.03 1.06 8.04 -2.39 -0.02 1.04 16 Total: -1.00 -67.83 373.36 5.51 -62.32 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: 0.99 Total: 15.37 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: 5.90 Total: 4.29 kcal Atomic # 7 Polarization: -101.43 SS G_CDS: -4.14 Total: -105.57 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.05 Total: -20.55 kcal Atomic # 9 Polarization: -2.97 SS G_CDS: 0.78 Total: -2.19 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Total: -67.83 5.51 -62.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269250998.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.580 kcal (2) G-P(sol) polarization free energy of solvation -67.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.89 seconds