Wall clock time and date at job start Tue Mar 31 2020 18:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46862 * 2 1 4 4 C 1.52999 * 109.46823 * 119.99692 * 2 1 3 5 5 C 1.53004 * 109.46989 * 174.99871 * 4 2 1 6 6 H 1.09000 * 109.46662 * 55.00238 * 5 4 2 7 7 C 1.52996 * 109.47336 * 174.99994 * 5 4 2 8 8 N 1.46498 * 109.47059 * 175.00083 * 7 5 4 9 9 C 1.36943 * 119.99752 * 179.72430 * 8 7 5 10 10 H 1.08002 * 119.99793 * 0.27665 * 9 8 7 11 11 C 1.38811 * 120.00012 * 180.27737 * 9 8 7 12 12 N 1.31624 * 119.99698 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00072 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47159 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.47290 * 120.00044 * 13 11 9 16 16 H 1.48503 * 109.47163 * 240.00049 * 13 11 9 17 17 N 1.46494 * 109.47171 * 295.00630 * 5 4 2 18 18 C 1.34779 * 120.00531 * 84.99693 * 17 5 4 19 19 O 1.21526 * 119.99550 * 0.02562 * 18 17 5 20 20 C 1.48119 * 120.00158 * 179.97438 * 18 17 5 21 21 C 1.39820 * 119.37007 * 179.97438 * 20 18 17 22 22 C 1.36973 * 119.60536 * 180.02562 * 21 20 18 23 23 C 1.39816 * 118.24974 * 0.02562 * 22 21 20 24 24 N 1.34655 * 135.00225 * 180.02562 * 23 22 21 25 25 N 1.28677 * 109.15934 * 179.97438 * 24 23 22 26 26 N 1.28768 * 111.84680 * 359.97438 * 25 24 23 27 27 H 0.96998 * 125.86114 * 180.02562 * 26 25 24 28 28 C 1.37255 * 108.27878 * 0.02562 * 26 25 24 29 29 N 1.31960 * 134.70250 * 180.35498 * 28 26 25 30 30 H 1.08997 * 109.47247 * 299.99954 * 1 2 3 31 31 H 1.09000 * 109.47485 * 60.00459 * 1 2 3 32 32 H 1.09006 * 109.47094 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47247 * 240.00046 * 2 1 3 34 34 H 1.08993 * 109.46832 * 299.99688 * 3 2 1 35 35 H 1.08997 * 109.47152 * 59.99987 * 3 2 1 36 36 H 1.09001 * 109.46642 * 179.97438 * 3 2 1 37 37 H 1.08997 * 109.47199 * 55.00713 * 4 2 1 38 38 H 1.08995 * 109.47432 * 294.99745 * 4 2 1 39 39 H 1.09004 * 109.47066 * 55.00351 * 7 5 4 40 40 H 1.08994 * 109.46974 * 295.00498 * 7 5 4 41 41 H 0.97001 * 120.00384 * 0.02562 * 8 7 5 42 42 H 0.96999 * 119.99739 * 180.02562 * 12 11 9 43 43 H 0.97009 * 119.99912 * 264.99313 * 17 5 4 44 44 H 1.07998 * 120.19772 * 359.97438 * 21 20 18 45 45 H 1.07992 * 120.87968 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.8310 1.1880 6 1 3.9953 0.1612 1.0528 7 6 4.0851 -1.4393 2.4919 8 7 5.5304 -1.6550 2.3875 9 6 6.2209 -2.1889 3.4427 10 1 5.6993 -2.4552 4.3502 11 6 7.5913 -2.3879 3.3460 12 7 8.2270 -2.0629 2.2402 13 14 8.5331 -3.1169 4.7850 14 1 7.5942 -3.3943 5.9015 15 1 9.1842 -4.3823 4.3605 16 1 9.5696 -2.1542 5.2369 17 7 3.9479 -1.6871 0.0627 18 6 4.0651 -1.1630 -1.1735 19 8 3.8535 0.0199 -1.3544 20 6 4.4531 -2.0285 -2.3112 21 6 4.5703 -1.4711 -3.5881 22 6 4.9282 -2.2672 -4.6437 23 6 5.1647 -3.6234 -4.3994 24 7 5.5221 -4.6788 -5.1554 25 7 5.6029 -5.7244 -4.4097 26 7 5.3237 -5.4592 -3.1809 27 1 5.3224 -6.0952 -2.4485 28 6 5.0284 -4.1222 -3.0853 29 7 4.6868 -3.3153 -2.0987 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9563 0.8899 36 1 3.1299 1.4425 0.0005 37 1 1.6054 -1.7197 1.2952 38 1 1.7516 -0.1582 2.1370 39 1 3.5877 -2.3923 2.6722 40 1 3.8779 -0.7593 3.3181 41 1 5.9989 -1.4155 1.5727 42 1 9.1845 -2.2024 2.1725 43 1 4.1173 -2.6313 0.2072 44 1 4.3789 -0.4193 -3.7413 45 1 5.0252 -1.8581 -5.6384 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271268348.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:30 Heat of formation + Delta-G solvation = 96.630111 kcal Electronic energy + Delta-G solvation = -28836.031979 eV Core-core repulsion = 24891.091332 eV Total energy + Delta-G solvation = -3944.940646 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.58757 -40.42170 -38.81705 -36.69500 -35.01913 -34.52466 -33.53024 -32.11219 -31.45308 -30.82256 -29.12908 -26.93626 -25.93751 -25.54781 -24.15784 -23.00655 -22.86556 -21.53812 -20.38342 -19.75146 -19.05863 -18.65973 -17.97026 -17.11819 -16.81069 -15.97587 -15.72766 -15.50927 -14.84163 -14.47297 -14.23946 -13.82359 -13.73070 -13.63363 -13.40017 -13.06957 -13.04533 -12.85114 -12.60267 -12.16451 -12.09237 -12.01336 -11.98271 -11.89517 -11.55905 -11.10025 -11.01488 -10.87115 -10.59700 -10.31885 -10.26350 -10.23099 -10.02227 -9.76824 -9.60760 -9.48301 -9.28606 -8.96496 -8.69333 -7.00076 -5.82132 -3.11934 -0.09167 0.74802 1.87996 1.91828 2.71278 3.16328 3.38657 3.44621 3.46826 3.51305 3.61270 4.00673 4.14580 4.51631 4.54119 4.64762 4.91189 5.11599 5.12718 5.13825 5.22128 5.47736 5.49441 5.54271 5.60206 5.64180 5.67446 5.83183 5.91739 5.98932 6.02517 6.06960 6.08550 6.16438 6.24458 6.34514 6.40309 6.43248 6.60434 6.61698 6.77963 6.85895 7.16434 7.64662 7.76745 7.87315 8.33447 8.35832 9.47574 10.03272 10.38370 11.40103 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.007285 B = 0.004675 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3842.851314 B = 5987.479117 C = 9002.397888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 C -0.139 4.139 4 C -0.123 4.123 5 C 0.133 3.867 6 H 0.095 0.905 7 C 0.144 3.856 8 N -0.731 5.731 9 C -0.242 4.242 10 H 0.071 0.929 11 C -0.011 4.011 12 N -0.930 5.930 13 Si 0.906 3.094 14 H -0.280 1.280 15 H -0.292 1.292 16 H -0.291 1.291 17 N -0.683 5.683 18 C 0.568 3.432 19 O -0.520 6.520 20 C 0.157 3.843 21 C -0.121 4.121 22 C -0.005 4.005 23 C -0.026 4.026 24 N -0.242 5.242 25 N 0.007 4.993 26 N -0.400 5.400 27 H 0.460 0.540 28 C 0.219 3.781 29 N -0.437 5.437 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.047 0.953 33 H 0.073 0.927 34 H 0.044 0.956 35 H 0.039 0.961 36 H 0.076 0.924 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.024 0.976 40 H 0.035 0.965 41 H 0.386 0.614 42 H 0.254 0.746 43 H 0.414 0.586 44 H 0.167 0.833 45 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.005 -0.314 -11.761 17.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 C -0.196 4.196 4 C -0.161 4.161 5 C 0.029 3.971 6 H 0.113 0.887 7 C 0.016 3.984 8 N -0.376 5.376 9 C -0.373 4.373 10 H 0.089 0.911 11 C -0.208 4.208 12 N -0.579 5.579 13 Si 0.737 3.263 14 H -0.205 1.205 15 H -0.219 1.219 16 H -0.218 1.218 17 N -0.333 5.333 18 C 0.352 3.648 19 O -0.397 6.397 20 C 0.002 3.998 21 C -0.145 4.145 22 C -0.036 4.036 23 C -0.154 4.154 24 N -0.119 5.119 25 N 0.024 4.976 26 N -0.132 5.132 27 H 0.309 0.691 28 C -0.025 4.025 29 N -0.153 5.153 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.091 0.909 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.095 0.905 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.042 0.958 40 H 0.053 0.947 41 H 0.220 0.780 42 H 0.064 0.936 43 H 0.250 0.750 44 H 0.185 0.815 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -12.772 -0.998 -11.903 17.487 hybrid contribution 0.766 -0.347 1.116 1.397 sum -12.006 -1.345 -10.787 16.196 Atomic orbital electron populations 1.21866 0.96331 1.00946 1.01218 1.21150 0.94275 0.97291 0.98470 1.21840 1.03035 0.94880 0.99838 1.22032 0.94822 1.00745 0.98548 1.21504 0.94137 0.95634 0.85837 0.88727 1.20972 0.87060 0.97408 0.92985 1.42349 1.01397 1.76239 1.17590 1.19253 0.90298 1.33557 0.94160 0.91075 1.24742 0.96588 1.02053 0.97375 1.69682 1.08466 1.53674 1.26030 0.86136 0.79990 0.78408 0.81744 1.20522 1.21948 1.21832 1.45870 1.66731 1.14160 1.06529 1.17613 0.78085 0.86628 0.82498 1.90803 1.50461 1.14390 1.83999 1.21392 0.95781 0.88068 0.94587 1.21752 0.98999 1.02654 0.91088 1.20491 0.93918 0.88393 1.00819 1.20671 1.06480 0.96455 0.91769 1.75392 1.17315 0.94901 1.24264 1.78088 1.11361 1.20855 0.87284 1.44693 1.51293 1.07156 1.10029 0.69120 1.19795 1.03686 0.86905 0.92162 1.66324 1.12115 1.03811 1.33100 0.93055 0.93185 0.93369 0.90855 0.93711 0.94179 0.90514 0.91873 0.90876 0.95783 0.94711 0.78002 0.93580 0.74956 0.81550 0.82411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.19 37.16 0.34 -1.21 16 2 C -0.09 -1.16 2.38 -90.62 -0.22 -1.38 16 3 C -0.14 -1.79 8.03 37.16 0.30 -1.49 16 4 C -0.12 -1.56 4.36 -26.73 -0.12 -1.68 16 5 C 0.13 2.06 2.33 -67.93 -0.16 1.90 16 6 H 0.09 1.62 5.92 -51.93 -0.31 1.31 16 7 C 0.14 2.67 5.82 -4.04 -0.02 2.65 16 8 N -0.73 -17.58 5.43 -59.91 -0.33 -17.90 16 9 C -0.24 -6.53 9.99 -15.06 -0.15 -6.68 16 10 H 0.07 1.87 7.83 -52.49 -0.41 1.45 16 11 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 12 N -0.93 -27.70 13.06 55.49 0.72 -26.97 16 13 Si 0.91 22.01 29.55 -169.99 -5.02 16.98 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 15 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 16 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 17 N -0.68 -10.45 4.46 -54.66 -0.24 -10.69 16 18 C 0.57 8.49 6.36 -12.20 -0.08 8.41 16 19 O -0.52 -8.15 11.24 5.34 0.06 -8.09 16 20 C 0.16 2.13 6.74 -82.93 -0.56 1.57 16 21 C -0.12 -1.33 9.55 -39.45 -0.38 -1.71 16 22 C -0.01 -0.06 10.17 -39.45 -0.40 -0.46 16 23 C -0.03 -0.33 7.38 -84.90 -0.63 -0.96 16 24 N -0.24 -3.22 12.43 32.12 0.40 -2.82 16 25 N 0.01 0.09 13.28 60.35 0.80 0.89 16 26 N -0.40 -4.44 7.06 31.13 0.22 -4.22 16 27 H 0.46 3.61 8.96 -190.26 -1.71 1.91 16 28 C 0.22 2.89 8.56 -156.27 -1.34 1.56 16 29 N -0.44 -6.15 9.54 -8.90 -0.08 -6.23 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.07 1.01 5.19 -51.93 -0.27 0.74 16 34 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.08 1.15 4.75 -51.93 -0.25 0.90 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.39 9.97 7.33 -40.82 -0.30 9.67 16 42 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 43 H 0.41 6.55 7.91 -40.82 -0.32 6.22 16 44 H 0.17 1.53 7.61 -52.49 -0.40 1.13 16 45 H 0.16 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 368.89 15.07 5.56 5.56 Total: -1.00 -31.82 368.89 -8.74 -40.55 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: -7.32 Total: 12.81 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -3.50 Total: 0.13 kcal Atomic # 7 Polarization: -69.44 SS G_CDS: 1.49 Total: -67.95 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: 0.06 Total: -8.09 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.82 -8.74 -40.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271268348.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.184 kcal (2) G-P(sol) polarization free energy of solvation -31.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds