Wall clock time and date at job start Tue Mar 31 2020 18:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47319 * 2 1 4 4 C 1.53007 * 109.46630 * 119.99689 * 2 1 3 5 5 C 1.52997 * 109.47262 * 65.00167 * 4 2 1 6 6 H 1.09004 * 109.46812 * 304.99956 * 5 4 2 7 7 C 1.52999 * 109.47114 * 184.99769 * 5 4 2 8 8 N 1.46500 * 109.47226 * 184.99495 * 7 5 4 9 9 C 1.36937 * 119.99856 * 179.97438 * 8 7 5 10 10 H 1.07995 * 120.00314 * 0.02562 * 9 8 7 11 11 C 1.38818 * 119.99459 * 180.02562 * 9 8 7 12 12 N 1.31621 * 119.99470 * 180.02562 * 11 9 8 13 13 Si 1.86795 * 120.00331 * 359.97438 * 11 9 8 14 14 H 1.48510 * 109.46867 * 90.00273 * 13 11 9 15 15 H 1.48496 * 109.47349 * 209.99962 * 13 11 9 16 16 H 1.48495 * 109.47212 * 330.00740 * 13 11 9 17 17 N 1.46498 * 109.47036 * 65.00021 * 5 4 2 18 18 C 1.34777 * 119.99828 * 274.72131 * 17 5 4 19 19 O 1.21523 * 119.99904 * 0.28092 * 18 17 5 20 20 C 1.48115 * 120.00153 * 180.27653 * 18 17 5 21 21 C 1.39826 * 119.37644 * 180.02562 * 20 18 17 22 22 C 1.36969 * 119.60596 * 180.02562 * 21 20 18 23 23 C 1.39813 * 118.25418 * 359.97438 * 22 21 20 24 24 N 1.34651 * 135.00310 * 180.02562 * 23 22 21 25 25 N 1.28668 * 109.16038 * 179.97438 * 24 23 22 26 26 N 1.28775 * 111.84695 * 0.02562 * 25 24 23 27 27 H 0.96999 * 125.85809 * 180.02562 * 26 25 24 28 28 C 1.37250 * 108.27673 * 359.97438 * 26 25 24 29 29 N 1.31960 * 134.70281 * 180.35551 * 28 26 25 30 30 H 1.09003 * 109.47495 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47553 * 300.00576 * 1 2 3 32 32 H 1.09006 * 109.46839 * 60.00313 * 1 2 3 33 33 H 1.08994 * 109.47694 * 239.99264 * 2 1 3 34 34 H 1.09005 * 109.47180 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.46936 * 299.99219 * 3 2 1 36 36 H 1.09000 * 109.47257 * 59.99770 * 3 2 1 37 37 H 1.09000 * 109.47004 * 304.99818 * 4 2 1 38 38 H 1.09005 * 109.47038 * 185.00178 * 4 2 1 39 39 H 1.08995 * 109.47415 * 304.99804 * 7 5 4 40 40 H 1.09008 * 109.47087 * 65.00143 * 7 5 4 41 41 H 0.96998 * 120.00120 * 0.02562 * 8 7 5 42 42 H 0.97006 * 119.99889 * 180.02562 * 12 11 9 43 43 H 0.97001 * 120.00384 * 95.00578 * 17 5 4 44 44 H 1.07996 * 120.19254 * 359.97438 * 21 20 18 45 45 H 1.08004 * 120.87057 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 1.6351 -2.1954 1.1882 6 1 0.5561 -2.2706 1.0528 7 6 2.0352 -2.8887 2.4921 8 7 1.7566 -4.3232 2.3879 9 6 2.0356 -5.1531 3.4408 10 1 2.4605 -4.7501 4.3482 11 6 1.7721 -6.5124 3.3418 12 7 2.0397 -7.3100 4.3540 13 14 1.0364 -7.2094 1.7726 14 1 2.1285 -7.6065 0.8478 15 1 0.2080 -8.3977 2.0995 16 1 0.1882 -6.1781 1.1229 17 7 2.3147 -2.8421 0.0629 18 6 1.7786 -2.7827 -1.1722 19 8 0.7342 -2.1884 -1.3534 20 6 2.4625 -3.4417 -2.3089 21 6 1.8950 -3.3714 -3.5849 22 6 2.5231 -3.9795 -4.6392 23 6 3.7227 -4.6548 -4.3948 24 7 4.5966 -5.3471 -5.1499 25 7 5.5569 -5.7691 -4.4048 26 7 5.4031 -5.4123 -3.1770 27 1 6.0052 -5.6196 -2.4454 28 6 4.2416 -4.6873 -3.0818 29 7 3.6032 -4.0821 -2.0982 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5139 -0.8898 34 1 3.1301 1.4425 0.0005 35 1 1.6768 1.9563 -0.8901 36 1 1.6767 1.9564 0.8900 37 1 1.6052 -0.2616 2.1370 38 1 3.1262 -0.6443 1.2954 39 1 3.0994 -2.7374 2.6724 40 1 1.4630 -2.4666 3.3184 41 1 1.3753 -4.6853 1.5728 42 1 1.8560 -8.2600 4.2847 43 1 3.1483 -3.3165 0.2075 44 1 0.9665 -2.8415 -3.7379 45 1 2.1032 -3.9378 -5.6334 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271268349.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:34 Heat of formation + Delta-G solvation = 100.465984 kcal Electronic energy + Delta-G solvation = -28998.268007 eV Core-core repulsion = 25053.493697 eV Total energy + Delta-G solvation = -3944.774310 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.71648 -40.58718 -38.96530 -36.85585 -35.18080 -34.65889 -33.66207 -32.23480 -31.60829 -31.07355 -29.48844 -27.01907 -26.07876 -25.80211 -24.29406 -23.09139 -22.63511 -21.59940 -20.55081 -19.84092 -19.20167 -18.80177 -18.22105 -17.53325 -16.94271 -16.12408 -15.87153 -15.65527 -14.82558 -14.59282 -14.44093 -13.99659 -13.86724 -13.60896 -13.55471 -13.40910 -13.02723 -12.81407 -12.71269 -12.32760 -12.22062 -12.14018 -12.11072 -12.02379 -11.74156 -11.34577 -11.19460 -10.94652 -10.66439 -10.42275 -10.38717 -10.28884 -10.16592 -9.76622 -9.67081 -9.62052 -9.42524 -9.00923 -8.86690 -7.32914 -5.84449 -3.20491 -0.23512 0.60838 1.74983 1.78749 2.55535 2.99430 3.29986 3.34966 3.37667 3.39445 3.44372 3.86693 4.00918 4.40493 4.48606 4.51932 4.75080 4.98492 5.02296 5.05075 5.08296 5.35256 5.39068 5.42150 5.45319 5.50996 5.55409 5.73232 5.79119 5.87350 5.88855 5.90026 5.98228 6.01757 6.15495 6.21888 6.28104 6.33162 6.49002 6.53227 6.66373 6.71194 7.00990 7.58623 7.75193 7.90750 8.15524 8.34229 9.12823 9.85134 10.04034 11.33732 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.007357 B = 0.005311 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3805.102896 B = 5270.842380 C = 8087.843947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.094 4.094 3 C -0.146 4.146 4 C -0.122 4.122 5 C 0.129 3.871 6 H 0.095 0.905 7 C 0.149 3.851 8 N -0.754 5.754 9 C -0.245 4.245 10 H 0.092 0.908 11 C 0.009 3.991 12 N -0.931 5.931 13 Si 0.880 3.120 14 H -0.286 1.286 15 H -0.290 1.290 16 H -0.277 1.277 17 N -0.688 5.688 18 C 0.566 3.434 19 O -0.517 6.517 20 C 0.153 3.847 21 C -0.122 4.122 22 C -0.004 4.004 23 C -0.025 4.025 24 N -0.241 5.241 25 N 0.010 4.990 26 N -0.400 5.400 27 H 0.461 0.539 28 C 0.218 3.782 29 N -0.440 5.440 30 H 0.075 0.925 31 H 0.040 0.960 32 H 0.044 0.956 33 H 0.072 0.928 34 H 0.048 0.952 35 H 0.049 0.951 36 H 0.051 0.949 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.034 0.966 40 H 0.044 0.956 41 H 0.362 0.638 42 H 0.260 0.740 43 H 0.414 0.586 44 H 0.168 0.832 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.892 13.006 -16.525 21.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.112 4.112 3 C -0.204 4.204 4 C -0.161 4.161 5 C 0.025 3.975 6 H 0.113 0.887 7 C 0.021 3.979 8 N -0.401 5.401 9 C -0.375 4.375 10 H 0.110 0.890 11 C -0.187 4.187 12 N -0.579 5.579 13 Si 0.710 3.290 14 H -0.213 1.213 15 H -0.216 1.216 16 H -0.203 1.203 17 N -0.339 5.339 18 C 0.350 3.650 19 O -0.393 6.393 20 C -0.002 4.002 21 C -0.145 4.145 22 C -0.035 4.035 23 C -0.153 4.153 24 N -0.117 5.117 25 N 0.027 4.973 26 N -0.132 5.132 27 H 0.310 0.690 28 C -0.027 4.027 29 N -0.157 5.157 30 H 0.093 0.907 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.091 0.909 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.052 0.948 40 H 0.062 0.938 41 H 0.195 0.805 42 H 0.070 0.930 43 H 0.251 0.749 44 H 0.185 0.815 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 3.481 12.548 -16.600 21.098 hybrid contribution -0.489 -0.644 -0.467 0.934 sum 2.992 11.904 -17.067 21.023 Atomic orbital electron populations 1.21844 0.94816 1.02990 0.99978 1.21149 0.96641 0.95027 0.98387 1.21862 1.00389 0.96821 1.01289 1.22023 1.01208 0.94191 0.98690 1.21589 0.98560 0.91655 0.85725 0.88663 1.20958 0.98706 0.85128 0.93113 1.42691 1.77714 1.02760 1.16898 1.19040 1.35330 0.88723 0.94426 0.89045 1.24636 1.01109 0.96012 0.96978 1.69694 1.53785 1.04089 1.30345 0.86621 0.79256 0.78817 0.84266 1.21331 1.21592 1.20333 1.45959 1.27268 1.53934 1.06757 1.17655 0.84654 0.80242 0.82492 1.90814 1.22027 1.42555 1.83883 1.21398 0.89665 0.94521 0.94661 1.21756 1.01981 0.99765 0.91028 1.20514 0.90042 0.92032 1.00868 1.20687 0.99135 1.03710 0.91736 1.75409 0.99891 1.12252 1.24195 1.78110 1.17990 1.13939 0.87247 1.44726 1.18626 1.39631 1.10172 0.69022 1.19793 0.91060 0.99572 0.92250 1.66311 1.08010 1.08060 1.33281 0.90672 0.94043 0.93668 0.90935 0.93306 0.93166 0.92966 0.90640 0.91659 0.94839 0.93785 0.80475 0.93003 0.74917 0.81470 0.82278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 8.04 37.16 0.30 -1.39 16 2 C -0.09 -1.09 2.38 -90.62 -0.22 -1.31 16 3 C -0.15 -1.47 9.19 37.16 0.34 -1.13 16 4 C -0.12 -1.45 4.36 -26.73 -0.12 -1.57 16 5 C 0.13 1.86 2.33 -67.93 -0.16 1.70 16 6 H 0.10 1.50 5.92 -51.93 -0.31 1.20 16 7 C 0.15 2.61 5.82 -4.04 -0.02 2.59 16 8 N -0.75 -17.03 5.24 -59.91 -0.31 -17.34 16 9 C -0.25 -6.72 10.47 -15.06 -0.16 -6.88 16 10 H 0.09 2.67 8.06 -52.49 -0.42 2.24 16 11 C 0.01 0.25 5.50 -17.43 -0.10 0.16 16 12 N -0.93 -28.81 13.97 55.49 0.78 -28.03 16 13 Si 0.88 22.14 27.73 -169.99 -4.71 17.43 16 14 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 15 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 16 H -0.28 -6.70 6.52 56.52 0.37 -6.34 16 17 N -0.69 -9.78 4.45 -54.67 -0.24 -10.03 16 18 C 0.57 7.85 6.37 -12.21 -0.08 7.77 16 19 O -0.52 -7.55 11.25 5.35 0.06 -7.48 16 20 C 0.15 1.92 6.74 -82.93 -0.56 1.36 16 21 C -0.12 -1.22 9.55 -39.45 -0.38 -1.59 16 22 C 0.00 -0.04 10.16 -39.45 -0.40 -0.44 16 23 C -0.03 -0.30 7.38 -84.91 -0.63 -0.92 16 24 N -0.24 -3.03 12.43 32.12 0.40 -2.63 16 25 N 0.01 0.12 13.28 60.35 0.80 0.92 16 26 N -0.40 -4.15 7.06 31.13 0.22 -3.93 16 27 H 0.46 3.30 8.96 -190.26 -1.71 1.59 16 28 C 0.22 2.69 8.56 -156.28 -1.34 1.35 16 29 N -0.44 -5.76 9.54 -8.90 -0.08 -5.84 16 30 H 0.07 1.05 4.75 -51.93 -0.25 0.80 16 31 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.94 5.21 -51.93 -0.27 0.67 16 34 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.04 0.78 8.14 -51.92 -0.42 0.36 16 41 H 0.36 8.23 5.20 -40.82 -0.21 8.02 16 42 H 0.26 7.68 8.31 -40.82 -0.34 7.35 16 43 H 0.41 5.98 7.91 -40.82 -0.32 5.66 16 44 H 0.17 1.37 7.61 -52.49 -0.40 0.97 16 45 H 0.16 0.95 8.06 -52.48 -0.42 0.53 16 LS Contribution 365.81 15.07 5.51 5.51 Total: -1.00 -32.84 365.81 -8.38 -41.21 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -7.28 Total: 10.51 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: -3.51 Total: -0.30 kcal Atomic # 7 Polarization: -68.43 SS G_CDS: 1.55 Total: -66.88 kcal Atomic # 8 Polarization: -7.55 SS G_CDS: 0.06 Total: -7.48 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.71 Total: 17.43 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.84 -8.38 -41.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271268349.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.679 kcal (2) G-P(sol) polarization free energy of solvation -32.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds