Wall clock time and date at job start Tue Mar 31 2020 18:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47319 * 2 1 4 4 C 1.53007 * 109.46630 * 119.99689 * 2 1 3 5 5 C 1.52997 * 109.47262 * 65.00167 * 4 2 1 6 6 H 1.09004 * 109.46812 * 304.99956 * 5 4 2 7 7 C 1.52999 * 109.47114 * 184.99769 * 5 4 2 8 8 N 1.46500 * 109.47226 * 184.99495 * 7 5 4 9 9 C 1.36937 * 119.99856 * 179.97438 * 8 7 5 10 10 H 1.07995 * 120.00314 * 0.02562 * 9 8 7 11 11 C 1.38818 * 119.99459 * 180.02562 * 9 8 7 12 12 N 1.31621 * 119.99470 * 180.02562 * 11 9 8 13 13 Si 1.86795 * 120.00331 * 359.97438 * 11 9 8 14 14 H 1.48510 * 109.46867 * 90.00273 * 13 11 9 15 15 H 1.48496 * 109.47349 * 209.99962 * 13 11 9 16 16 H 1.48495 * 109.47212 * 330.00740 * 13 11 9 17 17 N 1.46498 * 109.47036 * 65.00021 * 5 4 2 18 18 C 1.34777 * 119.99828 * 274.72131 * 17 5 4 19 19 O 1.21523 * 119.99904 * 0.28092 * 18 17 5 20 20 C 1.48115 * 120.00153 * 180.27653 * 18 17 5 21 21 C 1.39826 * 119.37644 * 180.02562 * 20 18 17 22 22 C 1.36969 * 119.60596 * 180.02562 * 21 20 18 23 23 C 1.39813 * 118.25418 * 359.97438 * 22 21 20 24 24 N 1.34651 * 135.00310 * 180.02562 * 23 22 21 25 25 N 1.28668 * 109.16038 * 179.97438 * 24 23 22 26 26 N 1.28775 * 111.84695 * 0.02562 * 25 24 23 27 27 H 0.96999 * 125.85809 * 180.02562 * 26 25 24 28 28 C 1.37250 * 108.27673 * 359.97438 * 26 25 24 29 29 N 1.31960 * 134.70281 * 180.35551 * 28 26 25 30 30 H 1.09003 * 109.47495 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47553 * 300.00576 * 1 2 3 32 32 H 1.09006 * 109.46839 * 60.00313 * 1 2 3 33 33 H 1.08994 * 109.47694 * 239.99264 * 2 1 3 34 34 H 1.09005 * 109.47180 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.46936 * 299.99219 * 3 2 1 36 36 H 1.09000 * 109.47257 * 59.99770 * 3 2 1 37 37 H 1.09000 * 109.47004 * 304.99818 * 4 2 1 38 38 H 1.09005 * 109.47038 * 185.00178 * 4 2 1 39 39 H 1.08995 * 109.47415 * 304.99804 * 7 5 4 40 40 H 1.09008 * 109.47087 * 65.00143 * 7 5 4 41 41 H 0.96998 * 120.00120 * 0.02562 * 8 7 5 42 42 H 0.97006 * 119.99889 * 180.02562 * 12 11 9 43 43 H 0.97001 * 120.00384 * 95.00578 * 17 5 4 44 44 H 1.07996 * 120.19254 * 359.97438 * 21 20 18 45 45 H 1.08004 * 120.87057 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 1.6351 -2.1954 1.1882 6 1 0.5561 -2.2706 1.0528 7 6 2.0352 -2.8887 2.4921 8 7 1.7566 -4.3232 2.3879 9 6 2.0356 -5.1531 3.4408 10 1 2.4605 -4.7501 4.3482 11 6 1.7721 -6.5124 3.3418 12 7 2.0397 -7.3100 4.3540 13 14 1.0364 -7.2094 1.7726 14 1 2.1285 -7.6065 0.8478 15 1 0.2080 -8.3977 2.0995 16 1 0.1882 -6.1781 1.1229 17 7 2.3147 -2.8421 0.0629 18 6 1.7786 -2.7827 -1.1722 19 8 0.7342 -2.1884 -1.3534 20 6 2.4625 -3.4417 -2.3089 21 6 1.8950 -3.3714 -3.5849 22 6 2.5231 -3.9795 -4.6392 23 6 3.7227 -4.6548 -4.3948 24 7 4.5966 -5.3471 -5.1499 25 7 5.5569 -5.7691 -4.4048 26 7 5.4031 -5.4123 -3.1770 27 1 6.0052 -5.6196 -2.4454 28 6 4.2416 -4.6873 -3.0818 29 7 3.6032 -4.0821 -2.0982 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5139 -0.8898 34 1 3.1301 1.4425 0.0005 35 1 1.6768 1.9563 -0.8901 36 1 1.6767 1.9564 0.8900 37 1 1.6052 -0.2616 2.1370 38 1 3.1262 -0.6443 1.2954 39 1 3.0994 -2.7374 2.6724 40 1 1.4630 -2.4666 3.3184 41 1 1.3753 -4.6853 1.5728 42 1 1.8560 -8.2600 4.2847 43 1 3.1483 -3.3165 0.2075 44 1 0.9665 -2.8415 -3.7379 45 1 2.1032 -3.9378 -5.6334 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271268349.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:33 Heat of formation + Delta-G solvation = 76.970238 kcal Electronic energy + Delta-G solvation = -28999.286859 eV Core-core repulsion = 25053.493697 eV Total energy + Delta-G solvation = -3945.793162 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.57903 -41.60874 -39.91575 -38.02336 -36.54082 -35.56027 -35.05898 -33.47985 -32.92587 -32.21933 -30.76735 -27.91298 -27.32247 -26.95585 -25.16579 -24.30399 -23.93814 -22.88438 -21.70185 -20.81441 -20.15043 -19.86028 -19.58054 -18.92526 -17.82371 -17.25938 -17.00050 -16.58534 -16.48455 -15.98498 -15.58862 -15.11691 -14.91895 -14.69785 -14.62465 -14.50828 -14.43426 -14.11852 -13.82299 -13.60975 -13.43082 -13.10357 -13.02917 -12.97412 -12.94207 -12.86165 -12.50837 -12.41242 -12.14522 -11.88135 -11.69330 -11.38302 -11.34799 -11.24938 -11.05010 -10.72165 -10.46277 -10.29972 -9.98351 -9.33357 -8.06410 -5.38459 -1.11075 -0.20893 0.84278 0.96659 1.29629 1.31441 1.38577 1.60360 1.97755 2.41407 2.51822 2.53531 2.99641 3.16035 3.26062 3.44617 3.56210 3.67133 3.87384 4.10643 4.15222 4.18970 4.22241 4.35042 4.39417 4.65254 4.67940 4.71296 4.83582 4.88135 4.93110 4.96279 5.02129 5.13441 5.14002 5.19941 5.23272 5.41618 5.46039 5.55016 5.61417 5.69554 5.74331 6.11215 6.17627 6.50119 6.87277 7.04081 7.07716 7.80287 7.97689 9.15108 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.007357 B = 0.005311 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3805.102896 B = 5270.842380 C = 8087.843947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.090 4.090 3 C -0.142 4.142 4 C -0.115 4.115 5 C 0.141 3.859 6 H 0.084 0.916 7 C 0.146 3.854 8 N -0.756 5.756 9 C -0.226 4.226 10 H 0.065 0.935 11 C -0.055 4.055 12 N -0.980 5.980 13 Si 0.943 3.057 14 H -0.283 1.283 15 H -0.296 1.296 16 H -0.262 1.262 17 N -0.693 5.693 18 C 0.566 3.434 19 O -0.526 6.526 20 C 0.138 3.862 21 C -0.116 4.116 22 C 0.011 3.989 23 C -0.035 4.035 24 N -0.257 5.257 25 N 0.007 4.993 26 N -0.388 5.388 27 H 0.472 0.528 28 C 0.201 3.799 29 N -0.457 5.457 30 H 0.055 0.945 31 H 0.049 0.951 32 H 0.046 0.954 33 H 0.060 0.940 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.041 0.959 40 H 0.047 0.953 41 H 0.363 0.637 42 H 0.257 0.743 43 H 0.412 0.588 44 H 0.187 0.813 45 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.405 14.529 -18.623 23.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.109 4.109 3 C -0.199 4.199 4 C -0.154 4.154 5 C 0.036 3.964 6 H 0.102 0.898 7 C 0.020 3.980 8 N -0.402 5.402 9 C -0.357 4.357 10 H 0.083 0.917 11 C -0.247 4.247 12 N -0.631 5.631 13 Si 0.772 3.228 14 H -0.209 1.209 15 H -0.223 1.223 16 H -0.187 1.187 17 N -0.344 5.344 18 C 0.351 3.649 19 O -0.402 6.402 20 C -0.016 4.016 21 C -0.139 4.139 22 C -0.020 4.020 23 C -0.163 4.163 24 N -0.133 5.133 25 N 0.023 4.977 26 N -0.122 5.122 27 H 0.323 0.677 28 C -0.044 4.044 29 N -0.174 5.174 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.104 0.896 38 H 0.091 0.909 39 H 0.059 0.941 40 H 0.065 0.935 41 H 0.196 0.804 42 H 0.066 0.934 43 H 0.249 0.751 44 H 0.204 0.796 45 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 3.003 14.125 -18.719 23.642 hybrid contribution -0.293 -1.029 0.227 1.093 sum 2.710 13.096 -18.492 22.821 Atomic orbital electron populations 1.21788 0.95142 1.01810 1.00489 1.21093 0.96276 0.95984 0.97526 1.21813 1.00668 0.95539 1.01918 1.21980 1.01761 0.92251 0.99425 1.21397 0.97882 0.92844 0.84234 0.89768 1.21137 0.99096 0.82556 0.95227 1.42694 1.77500 1.04411 1.15584 1.19055 1.32974 0.89212 0.94491 0.91678 1.25319 1.02757 0.96596 1.00031 1.69852 1.56242 1.04234 1.32722 0.85584 0.78543 0.77994 0.80649 1.20930 1.22295 1.18686 1.45963 1.27213 1.54232 1.06968 1.17826 0.84525 0.80003 0.82584 1.90811 1.22377 1.42922 1.84069 1.21383 0.89984 0.95114 0.95168 1.21950 1.02426 0.99551 0.89999 1.20932 0.88669 0.90095 1.02263 1.21072 0.99897 1.03912 0.91422 1.75383 1.00344 1.12935 1.24653 1.78057 1.17986 1.14001 0.87639 1.44764 1.18377 1.38879 1.10201 0.67689 1.19972 0.91697 1.00188 0.92551 1.66223 1.08529 1.08743 1.33869 0.92625 0.93231 0.93457 0.92116 0.92848 0.92690 0.92222 0.89616 0.90895 0.94082 0.93468 0.80377 0.93386 0.75121 0.79556 0.78665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.04 71.98 0.58 -2.46 16 2 C -0.09 -1.92 2.38 -10.79 -0.03 -1.95 16 3 C -0.14 -2.49 9.19 71.98 0.66 -1.82 16 4 C -0.12 -2.52 4.36 30.60 0.13 -2.38 16 5 C 0.14 3.87 2.33 44.99 0.10 3.98 16 6 H 0.08 2.56 5.92 -2.39 -0.01 2.54 16 7 C 0.15 4.98 5.82 86.38 0.50 5.48 16 8 N -0.76 -33.55 5.24 -343.45 -1.80 -35.35 16 9 C -0.23 -12.45 10.47 84.03 0.88 -11.57 16 10 H 0.07 3.88 8.06 -2.91 -0.02 3.86 16 11 C -0.06 -3.20 5.50 84.86 0.47 -2.73 16 12 N -0.98 -61.86 13.97 21.65 0.30 -61.56 16 13 Si 0.94 45.91 27.73 68.60 1.90 47.82 16 14 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 15 H -0.30 -14.65 7.11 99.48 0.71 -13.95 16 16 H -0.26 -11.89 6.52 99.48 0.65 -11.24 16 17 N -0.69 -18.86 4.45 -445.15 -1.98 -20.84 16 18 C 0.57 14.89 6.37 86.87 0.55 15.45 16 19 O -0.53 -14.52 11.25 -3.79 -0.04 -14.57 16 20 C 0.14 3.24 6.74 42.05 0.28 3.53 16 21 C -0.12 -2.02 9.55 22.36 0.21 -1.81 16 22 C 0.01 0.17 10.16 22.35 0.23 0.40 16 23 C -0.04 -0.77 7.38 39.83 0.29 -0.48 16 24 N -0.26 -6.09 12.43 -52.30 -0.65 -6.74 16 25 N 0.01 0.15 13.28 37.02 0.49 0.64 16 26 N -0.39 -7.69 7.06 -55.42 -0.39 -8.09 16 27 H 0.47 6.42 8.96 -219.84 -1.97 4.45 16 28 C 0.20 4.72 8.56 134.30 1.15 5.87 16 29 N -0.46 -11.43 9.54 -182.09 -1.74 -13.16 16 30 H 0.05 1.48 4.75 -2.39 -0.01 1.47 16 31 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 33 H 0.06 1.46 5.21 -2.39 -0.01 1.45 16 34 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 39 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 41 H 0.36 16.02 5.20 -92.71 -0.48 15.54 16 42 H 0.26 15.57 8.31 -92.70 -0.77 14.79 16 43 H 0.41 11.54 7.91 -92.71 -0.73 10.81 16 44 H 0.19 2.49 7.61 -2.91 -0.02 2.47 16 45 H 0.20 1.55 8.06 -2.91 -0.02 1.52 16 Total: -1.00 -70.58 365.81 -0.06 -70.64 By element: Atomic # 1 Polarization: 33.90 SS G_CDS: -2.18 Total: 31.73 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: 6.02 Total: 9.49 kcal Atomic # 7 Polarization: -139.34 SS G_CDS: -5.77 Total: -145.10 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: -0.04 Total: -14.57 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 1.90 Total: 47.82 kcal Total: -70.58 -0.06 -70.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271268349.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.606 kcal (2) G-P(sol) polarization free energy of solvation -70.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds