Wall clock time and date at job start Tue Mar 31 2020 18:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47047 * 2 1 4 4 C 1.53003 * 109.47014 * 119.99682 * 2 1 3 5 5 C 1.52996 * 109.47152 * 175.00016 * 4 2 1 6 6 H 1.09008 * 109.47229 * 55.00128 * 5 4 2 7 7 C 1.52998 * 109.47309 * 174.99986 * 5 4 2 8 8 N 1.46504 * 109.47491 * 175.00045 * 7 5 4 9 9 C 1.36932 * 120.00237 * 180.02562 * 8 7 5 10 10 H 1.07998 * 120.00149 * 359.97438 * 9 8 7 11 11 C 1.38809 * 120.00003 * 180.02562 * 9 8 7 12 12 N 1.31618 * 120.00056 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 120.00250 * 359.97438 * 11 9 8 14 14 H 1.48502 * 109.47098 * 89.99830 * 13 11 9 15 15 H 1.48496 * 109.47626 * 210.00506 * 13 11 9 16 16 H 1.48508 * 109.46813 * 330.00405 * 13 11 9 17 17 N 1.46505 * 109.47130 * 295.00060 * 5 4 2 18 18 C 1.34777 * 119.99724 * 85.00158 * 17 5 4 19 19 O 1.21623 * 120.00245 * 359.97438 * 18 17 5 20 20 C 1.47315 * 119.99564 * 179.72651 * 18 17 5 21 21 C 1.39000 * 120.90852 * 359.97438 * 20 18 17 22 22 C 1.39715 * 119.29407 * 179.77609 * 21 20 18 23 23 C 1.35258 * 121.07960 * 0.51795 * 22 21 20 24 24 N 1.35720 * 121.57025 * 359.74221 * 23 22 21 25 25 N 1.40202 * 134.08720 * 180.02562 * 24 23 22 26 26 N 1.29021 * 106.96438 * 179.97438 * 25 24 23 27 27 N 1.28597 * 110.78172 * 359.97438 * 26 25 24 28 28 C 1.32044 * 110.21660 * 359.97438 * 27 26 25 29 29 H 1.09004 * 109.47368 * 300.00537 * 1 2 3 30 30 H 1.09000 * 109.47539 * 60.00000 * 1 2 3 31 31 H 1.09002 * 109.47184 * 180.02562 * 1 2 3 32 32 H 1.08990 * 109.47403 * 239.99748 * 2 1 3 33 33 H 1.09002 * 109.47173 * 179.97438 * 3 2 1 34 34 H 1.09004 * 109.47162 * 299.99625 * 3 2 1 35 35 H 1.09003 * 109.47777 * 59.99982 * 3 2 1 36 36 H 1.09000 * 109.47154 * 54.99936 * 4 2 1 37 37 H 1.09004 * 109.47247 * 294.99820 * 4 2 1 38 38 H 1.09003 * 109.47541 * 295.00165 * 7 5 4 39 39 H 1.09000 * 109.47194 * 54.99765 * 7 5 4 40 40 H 0.97000 * 119.99826 * 0.02562 * 8 7 5 41 41 H 0.97006 * 120.00339 * 180.02562 * 12 11 9 42 42 H 0.97000 * 119.99792 * 264.99726 * 17 5 4 43 43 H 1.08006 * 120.34983 * 0.02562 * 21 20 18 44 44 H 1.08003 * 119.46235 * 180.27688 * 22 21 20 45 45 H 1.07997 * 119.21841 * 179.71519 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5647 -0.8310 1.1881 6 1 3.9953 0.1612 1.0528 7 6 4.0850 -1.4393 2.4920 8 7 5.5304 -1.6550 2.3877 9 6 6.2198 -2.1946 3.4405 10 1 5.6983 -2.4608 4.3480 11 6 7.5893 -2.3984 3.3419 12 7 8.2520 -2.9176 4.3537 13 14 8.4917 -1.9373 1.7727 14 1 8.9586 -0.5306 1.8653 15 1 9.6600 -2.8357 1.5911 16 1 7.5736 -2.0788 0.6140 17 7 3.9479 -1.6872 0.0627 18 6 4.0651 -1.1631 -1.1734 19 8 3.8524 0.0206 -1.3547 20 6 4.4563 -2.0228 -2.3039 21 6 4.7093 -3.3768 -2.1170 22 6 5.0735 -4.1619 -3.2139 23 6 5.1931 -3.6236 -4.4489 24 7 4.9607 -2.3057 -4.6752 25 7 5.0037 -1.4890 -5.8140 26 7 4.6839 -0.2978 -5.4353 27 7 4.4407 -0.2703 -4.1729 28 6 4.5936 -1.4741 -3.6523 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 3.1299 1.4425 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.6053 -1.7197 1.2953 37 1 1.7516 -0.1582 2.1370 38 1 3.8779 -0.7593 3.3183 39 1 3.5875 -2.3922 2.6723 40 1 5.9989 -1.4155 1.5728 41 1 9.2091 -3.0597 4.2849 42 1 4.1172 -2.6313 0.2073 43 1 4.6214 -3.8180 -1.1351 44 1 5.2663 -5.2151 -3.0726 45 1 5.4808 -4.2574 -5.2747 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271270010.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:39 Heat of formation + Delta-G solvation = 128.543125 kcal Electronic energy + Delta-G solvation = -29261.265545 eV Core-core repulsion = 25317.708751 eV Total energy + Delta-G solvation = -3943.556794 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 2.32 seconds Orbital eigenvalues (eV) -43.58726 -40.31643 -38.78555 -36.89903 -35.19975 -34.32910 -33.57559 -32.29962 -31.64754 -30.80308 -29.37175 -26.94655 -25.91298 -25.69170 -24.60140 -23.72844 -22.53487 -21.38826 -20.65079 -19.78801 -19.05702 -18.05005 -17.89501 -17.30670 -17.11741 -16.08460 -16.03334 -15.74489 -14.78441 -14.47725 -14.34306 -14.06861 -13.96473 -13.49600 -13.40419 -13.24179 -13.18339 -12.85034 -12.73405 -12.65673 -12.35154 -12.17383 -12.08508 -11.72279 -11.65954 -11.32384 -11.20216 -11.16836 -10.95411 -10.60456 -10.56809 -10.39503 -10.29132 -10.14571 -9.84746 -9.70521 -9.05875 -9.00662 -8.83750 -7.37081 -5.87821 -3.24500 -0.36459 0.17328 1.32328 1.89234 2.25853 2.91858 3.21069 3.24255 3.25850 3.31878 3.37842 3.66403 3.97588 4.14552 4.44088 4.48100 4.72030 4.76373 4.95091 5.05282 5.09090 5.10628 5.18719 5.26352 5.38045 5.42796 5.44329 5.51949 5.55903 5.76980 5.79886 5.90924 5.94004 5.94833 6.00159 6.07193 6.18820 6.26726 6.39612 6.47515 6.59379 6.69630 6.76360 7.49628 7.87407 8.14261 8.18950 8.30756 9.09184 9.81209 10.00203 11.30253 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.008826 B = 0.004922 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3171.814765 B = 5686.804373 C = 7857.727175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 C -0.139 4.139 4 C -0.122 4.122 5 C 0.133 3.867 6 H 0.096 0.904 7 C 0.149 3.851 8 N -0.755 5.755 9 C -0.248 4.248 10 H 0.092 0.908 11 C 0.009 3.991 12 N -0.931 5.931 13 Si 0.882 3.118 14 H -0.284 1.284 15 H -0.291 1.291 16 H -0.280 1.280 17 N -0.706 5.706 18 C 0.555 3.445 19 O -0.492 6.492 20 C -0.096 4.096 21 C -0.020 4.020 22 C -0.140 4.140 23 C 0.124 3.876 24 N -0.309 5.309 25 N -0.110 5.110 26 N -0.011 5.011 27 N -0.288 5.288 28 C 0.273 3.727 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.047 0.953 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.045 0.955 35 H 0.039 0.961 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.045 0.955 39 H 0.034 0.966 40 H 0.362 0.638 41 H 0.260 0.740 42 H 0.401 0.599 43 H 0.166 0.834 44 H 0.176 0.824 45 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.177 -4.897 -14.702 19.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 C -0.196 4.196 4 C -0.161 4.161 5 C 0.029 3.971 6 H 0.113 0.887 7 C 0.021 3.979 8 N -0.401 5.401 9 C -0.377 4.377 10 H 0.109 0.891 11 C -0.187 4.187 12 N -0.578 5.578 13 Si 0.712 3.288 14 H -0.210 1.210 15 H -0.217 1.217 16 H -0.206 1.206 17 N -0.358 5.358 18 C 0.340 3.660 19 O -0.367 6.367 20 C -0.105 4.105 21 C -0.045 4.045 22 C -0.164 4.164 23 C -0.003 4.003 24 N -0.089 5.089 25 N -0.093 5.093 26 N -0.004 5.004 27 N -0.145 5.145 28 C 0.015 3.985 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.063 0.937 39 H 0.052 0.948 40 H 0.195 0.805 41 H 0.070 0.930 42 H 0.237 0.763 43 H 0.184 0.816 44 H 0.194 0.806 45 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -12.288 -2.956 -15.822 20.250 hybrid contribution 1.069 -1.111 -0.511 1.624 sum -11.219 -4.067 -16.333 20.228 Atomic orbital electron populations 1.21858 0.96262 1.00909 1.01294 1.21146 0.94363 0.97377 0.98305 1.21832 1.02934 0.94889 0.99925 1.22023 0.94447 1.00872 0.98721 1.21539 0.94618 0.95553 0.85346 0.88651 1.20965 0.85627 0.98128 0.93182 1.42704 1.03092 1.77547 1.16799 1.19038 0.90771 1.33589 0.94330 0.89056 1.24646 0.96228 1.00835 0.97005 1.69693 1.08025 1.49714 1.30399 0.86623 0.79724 0.78428 0.84033 1.21016 1.21700 1.20590 1.45889 1.69678 1.13417 1.06859 1.17379 0.78886 0.87497 0.82267 1.90917 1.47651 1.14432 1.83668 1.20445 1.06641 0.94053 0.89337 1.22137 0.90157 0.91318 1.00936 1.21063 1.02494 1.02710 0.90095 1.21784 0.97324 0.80958 1.00267 1.48995 1.41890 1.09592 1.08461 1.82798 1.27430 0.96446 1.02649 1.78050 1.05531 1.11458 1.05357 1.75300 1.23138 1.15934 1.00091 1.23618 0.96651 0.87265 0.90975 0.92995 0.93201 0.93372 0.90910 0.90654 0.93603 0.94165 0.91716 0.90693 0.93747 0.94835 0.80470 0.92956 0.76305 0.81626 0.80631 0.79877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.19 37.15 0.34 -1.22 16 2 C -0.09 -1.16 2.38 -90.62 -0.22 -1.37 16 3 C -0.14 -1.89 8.03 37.16 0.30 -1.59 16 4 C -0.12 -1.42 4.36 -26.73 -0.12 -1.54 16 5 C 0.13 1.85 2.33 -67.93 -0.16 1.69 16 6 H 0.10 1.52 5.92 -51.92 -0.31 1.21 16 7 C 0.15 2.46 5.82 -4.04 -0.02 2.43 16 8 N -0.76 -16.10 5.24 -59.91 -0.31 -16.41 16 9 C -0.25 -6.50 10.47 -15.06 -0.16 -6.66 16 10 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 11 C 0.01 0.25 5.50 -17.43 -0.10 0.16 16 12 N -0.93 -27.95 13.97 55.49 0.78 -27.18 16 13 Si 0.88 21.17 27.74 -169.99 -4.71 16.46 16 14 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 15 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 16 H -0.28 -6.14 6.52 56.52 0.37 -5.77 16 17 N -0.71 -8.95 4.42 -54.91 -0.24 -9.20 16 18 C 0.56 7.79 6.33 -12.57 -0.08 7.71 16 19 O -0.49 -8.31 11.23 5.26 0.06 -8.25 16 20 C -0.10 -1.15 6.06 -102.72 -0.62 -1.77 16 21 C -0.02 -0.15 9.63 -38.75 -0.37 -0.52 16 22 C -0.14 -0.70 9.92 -40.09 -0.40 -1.10 16 23 C 0.12 0.81 11.15 -16.89 -0.19 0.63 16 24 N -0.31 -3.62 3.94 -10.99 -0.04 -3.66 16 25 N -0.11 -1.55 13.99 60.35 0.84 -0.71 16 26 N -0.01 -0.18 13.36 60.35 0.81 0.63 16 27 N -0.29 -4.89 11.75 32.20 0.38 -4.51 16 28 C 0.27 3.87 7.85 -154.52 -1.21 2.66 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 1.02 5.19 -51.93 -0.27 0.75 16 33 H 0.07 1.17 4.75 -51.93 -0.25 0.93 16 34 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.36 7.74 5.20 -40.82 -0.21 7.53 16 41 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 42 H 0.40 4.32 6.71 -40.82 -0.27 4.05 16 43 H 0.17 0.88 6.49 -52.48 -0.34 0.54 16 44 H 0.18 0.17 8.06 -52.48 -0.42 -0.26 16 45 H 0.18 0.50 8.06 -52.49 -0.42 0.08 16 LS Contribution 365.40 15.07 5.51 5.51 Total: -1.00 -35.27 365.40 -5.84 -41.11 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -5.89 Total: 6.71 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -3.00 Total: -0.49 kcal Atomic # 7 Polarization: -63.24 SS G_CDS: 2.20 Total: -61.04 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: 0.06 Total: -8.25 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.71 Total: 16.46 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.27 -5.84 -41.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271270010.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.651 kcal (2) G-P(sol) polarization free energy of solvation -35.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.32 seconds