Wall clock time and date at job start Tue Mar 31 2020 18:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47047 * 2 1 4 4 C 1.53003 * 109.47014 * 119.99682 * 2 1 3 5 5 C 1.52996 * 109.47152 * 175.00016 * 4 2 1 6 6 H 1.09008 * 109.47229 * 55.00128 * 5 4 2 7 7 C 1.52998 * 109.47309 * 174.99986 * 5 4 2 8 8 N 1.46504 * 109.47491 * 175.00045 * 7 5 4 9 9 C 1.36932 * 120.00237 * 180.02562 * 8 7 5 10 10 H 1.07998 * 120.00149 * 359.97438 * 9 8 7 11 11 C 1.38809 * 120.00003 * 180.02562 * 9 8 7 12 12 N 1.31618 * 120.00056 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 120.00250 * 359.97438 * 11 9 8 14 14 H 1.48502 * 109.47098 * 89.99830 * 13 11 9 15 15 H 1.48496 * 109.47626 * 210.00506 * 13 11 9 16 16 H 1.48508 * 109.46813 * 330.00405 * 13 11 9 17 17 N 1.46505 * 109.47130 * 295.00060 * 5 4 2 18 18 C 1.34777 * 119.99724 * 85.00158 * 17 5 4 19 19 O 1.21623 * 120.00245 * 359.97438 * 18 17 5 20 20 C 1.47315 * 119.99564 * 179.72651 * 18 17 5 21 21 C 1.39000 * 120.90852 * 359.97438 * 20 18 17 22 22 C 1.39715 * 119.29407 * 179.77609 * 21 20 18 23 23 C 1.35258 * 121.07960 * 0.51795 * 22 21 20 24 24 N 1.35720 * 121.57025 * 359.74221 * 23 22 21 25 25 N 1.40202 * 134.08720 * 180.02562 * 24 23 22 26 26 N 1.29021 * 106.96438 * 179.97438 * 25 24 23 27 27 N 1.28597 * 110.78172 * 359.97438 * 26 25 24 28 28 C 1.32044 * 110.21660 * 359.97438 * 27 26 25 29 29 H 1.09004 * 109.47368 * 300.00537 * 1 2 3 30 30 H 1.09000 * 109.47539 * 60.00000 * 1 2 3 31 31 H 1.09002 * 109.47184 * 180.02562 * 1 2 3 32 32 H 1.08990 * 109.47403 * 239.99748 * 2 1 3 33 33 H 1.09002 * 109.47173 * 179.97438 * 3 2 1 34 34 H 1.09004 * 109.47162 * 299.99625 * 3 2 1 35 35 H 1.09003 * 109.47777 * 59.99982 * 3 2 1 36 36 H 1.09000 * 109.47154 * 54.99936 * 4 2 1 37 37 H 1.09004 * 109.47247 * 294.99820 * 4 2 1 38 38 H 1.09003 * 109.47541 * 295.00165 * 7 5 4 39 39 H 1.09000 * 109.47194 * 54.99765 * 7 5 4 40 40 H 0.97000 * 119.99826 * 0.02562 * 8 7 5 41 41 H 0.97006 * 120.00339 * 180.02562 * 12 11 9 42 42 H 0.97000 * 119.99792 * 264.99726 * 17 5 4 43 43 H 1.08006 * 120.34983 * 0.02562 * 21 20 18 44 44 H 1.08003 * 119.46235 * 180.27688 * 22 21 20 45 45 H 1.07997 * 119.21841 * 179.71519 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5647 -0.8310 1.1881 6 1 3.9953 0.1612 1.0528 7 6 4.0850 -1.4393 2.4920 8 7 5.5304 -1.6550 2.3877 9 6 6.2198 -2.1946 3.4405 10 1 5.6983 -2.4608 4.3480 11 6 7.5893 -2.3984 3.3419 12 7 8.2520 -2.9176 4.3537 13 14 8.4917 -1.9373 1.7727 14 1 8.9586 -0.5306 1.8653 15 1 9.6600 -2.8357 1.5911 16 1 7.5736 -2.0788 0.6140 17 7 3.9479 -1.6872 0.0627 18 6 4.0651 -1.1631 -1.1734 19 8 3.8524 0.0206 -1.3547 20 6 4.4563 -2.0228 -2.3039 21 6 4.7093 -3.3768 -2.1170 22 6 5.0735 -4.1619 -3.2139 23 6 5.1931 -3.6236 -4.4489 24 7 4.9607 -2.3057 -4.6752 25 7 5.0037 -1.4890 -5.8140 26 7 4.6839 -0.2978 -5.4353 27 7 4.4407 -0.2703 -4.1729 28 6 4.5936 -1.4741 -3.6523 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 3.1299 1.4425 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.6053 -1.7197 1.2953 37 1 1.7516 -0.1582 2.1370 38 1 3.8779 -0.7593 3.3183 39 1 3.5875 -2.3922 2.6723 40 1 5.9989 -1.4155 1.5728 41 1 9.2091 -3.0597 4.2849 42 1 4.1172 -2.6313 0.2073 43 1 4.6214 -3.8180 -1.1351 44 1 5.2663 -5.2151 -3.0726 45 1 5.4808 -4.2574 -5.2747 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271270010.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:35 Heat of formation + Delta-G solvation = 102.741904 kcal Electronic energy + Delta-G solvation = -29262.384370 eV Core-core repulsion = 25317.708751 eV Total energy + Delta-G solvation = -3944.675619 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 4.82 seconds Orbital eigenvalues (eV) -44.50612 -41.33728 -39.58054 -38.04464 -36.54029 -35.37926 -34.82029 -33.37753 -33.07467 -31.89447 -30.53852 -27.94694 -27.28574 -26.56128 -25.39200 -24.77527 -24.11655 -22.55487 -21.71802 -20.79853 -20.02163 -19.70255 -18.67902 -18.38620 -18.05512 -17.10292 -16.91324 -16.66575 -16.41381 -15.89004 -15.48095 -15.05589 -14.86032 -14.78615 -14.68578 -14.40039 -14.18099 -13.94718 -13.82044 -13.69712 -13.44389 -13.29699 -13.08781 -12.99999 -12.92059 -12.58602 -12.50813 -12.38600 -12.18073 -12.02481 -11.80892 -11.67242 -11.37307 -11.32687 -11.23531 -11.02286 -10.88147 -10.02123 -9.71511 -9.27464 -7.99818 -5.32461 -1.08035 -0.62227 0.55813 0.94745 1.33282 1.42096 1.45949 1.47543 1.97664 2.30858 2.46354 2.48224 2.84249 3.33103 3.36977 3.51732 3.56593 3.72410 3.91432 4.00492 4.11140 4.15510 4.18309 4.31360 4.37470 4.45304 4.54437 4.65741 4.71886 4.83432 4.90947 4.92586 4.93274 4.96491 5.04444 5.11824 5.18692 5.25224 5.32566 5.41797 5.57536 5.59171 5.67896 5.81305 6.23787 6.53482 7.10739 7.15135 7.21879 7.86345 8.04156 9.21559 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.008826 B = 0.004922 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3171.814765 B = 5686.804373 C = 7857.727175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.089 4.089 3 C -0.134 4.134 4 C -0.113 4.113 5 C 0.145 3.855 6 H 0.072 0.928 7 C 0.149 3.851 8 N -0.756 5.756 9 C -0.225 4.225 10 H 0.065 0.935 11 C -0.054 4.054 12 N -0.981 5.981 13 Si 0.941 3.059 14 H -0.299 1.299 15 H -0.294 1.294 16 H -0.245 1.245 17 N -0.699 5.699 18 C 0.554 3.446 19 O -0.531 6.531 20 C -0.135 4.135 21 C 0.011 3.989 22 C -0.116 4.116 23 C 0.120 3.880 24 N -0.306 5.306 25 N -0.122 5.122 26 N -0.040 5.040 27 N -0.338 5.338 28 C 0.255 3.745 29 H 0.060 0.940 30 H 0.043 0.957 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.032 0.968 35 H 0.050 0.950 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.041 0.959 39 H 0.053 0.947 40 H 0.364 0.636 41 H 0.257 0.743 42 H 0.412 0.588 43 H 0.196 0.804 44 H 0.234 0.766 45 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.073 -8.090 -15.608 21.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.108 4.108 3 C -0.191 4.191 4 C -0.151 4.151 5 C 0.040 3.960 6 H 0.090 0.910 7 C 0.022 3.978 8 N -0.402 5.402 9 C -0.356 4.356 10 H 0.083 0.917 11 C -0.246 4.246 12 N -0.632 5.632 13 Si 0.770 3.230 14 H -0.226 1.226 15 H -0.220 1.220 16 H -0.170 1.170 17 N -0.353 5.353 18 C 0.340 3.660 19 O -0.408 6.408 20 C -0.145 4.145 21 C -0.015 4.015 22 C -0.139 4.139 23 C -0.006 4.006 24 N -0.086 5.086 25 N -0.105 5.105 26 N -0.032 5.032 27 N -0.196 5.196 28 C -0.002 4.002 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.051 0.949 35 H 0.069 0.931 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.059 0.941 39 H 0.071 0.929 40 H 0.197 0.803 41 H 0.066 0.934 42 H 0.250 0.750 43 H 0.213 0.787 44 H 0.250 0.750 45 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -13.239 -6.173 -16.759 22.231 hybrid contribution 1.296 -0.288 -0.139 1.335 sum -11.943 -6.461 -16.898 21.678 Atomic orbital electron populations 1.21808 0.94665 1.01873 1.01511 1.21066 0.95584 0.96145 0.97991 1.21766 1.01412 0.96168 0.99776 1.21957 0.92567 1.02045 0.98575 1.21284 0.95935 0.94353 0.84428 0.91015 1.21117 0.83003 0.99051 0.94581 1.42693 1.04950 1.77011 1.15506 1.19034 0.90776 1.31406 0.94402 0.91704 1.25313 0.97272 1.02010 1.00019 1.69854 1.08078 1.52385 1.32874 0.85639 0.78848 0.76817 0.81743 1.22636 1.22026 1.16961 1.45743 1.69589 1.13730 1.06197 1.17694 0.78054 0.87345 0.82889 1.90907 1.49382 1.16287 1.84269 1.20304 1.10814 0.95645 0.87707 1.22704 0.86169 0.89363 1.03214 1.21795 0.99319 1.04690 0.88074 1.22921 0.95834 0.79157 1.02706 1.49127 1.41513 1.10902 1.07080 1.82604 1.27831 0.96334 1.03738 1.77973 1.06900 1.12699 1.05669 1.75135 1.25331 1.18553 1.00618 1.23778 0.97158 0.87041 0.92176 0.92060 0.93747 0.92005 0.92509 0.92959 0.94867 0.93052 0.89684 0.89866 0.94063 0.92874 0.80311 0.93443 0.74988 0.78713 0.74964 0.75601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.19 71.98 0.66 -2.11 16 2 C -0.09 -2.14 2.38 -10.80 -0.03 -2.16 16 3 C -0.13 -3.72 8.03 71.98 0.58 -3.14 16 4 C -0.11 -2.38 4.36 30.59 0.13 -2.25 16 5 C 0.14 3.78 2.33 44.99 0.10 3.89 16 6 H 0.07 2.28 5.92 -2.38 -0.01 2.26 16 7 C 0.15 4.60 5.82 86.38 0.50 5.11 16 8 N -0.76 -30.80 5.24 -343.45 -1.80 -32.60 16 9 C -0.23 -11.64 10.47 84.03 0.88 -10.76 16 10 H 0.06 3.66 8.06 -2.91 -0.02 3.64 16 11 C -0.05 -2.99 5.50 84.86 0.47 -2.52 16 12 N -0.98 -59.59 13.97 21.65 0.30 -59.29 16 13 Si 0.94 43.02 27.74 68.60 1.90 44.92 16 14 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 15 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 16 H -0.25 -9.66 6.52 99.48 0.65 -9.01 16 17 N -0.70 -16.22 4.42 -445.89 -1.97 -18.19 16 18 C 0.55 15.10 6.33 86.63 0.55 15.65 16 19 O -0.53 -18.56 11.23 -4.10 -0.05 -18.60 16 20 C -0.14 -2.99 6.06 -18.63 -0.11 -3.10 16 21 C 0.01 0.11 9.63 22.81 0.22 0.33 16 22 C -0.12 -0.42 9.92 21.94 0.22 -0.20 16 23 C 0.12 1.01 11.15 83.40 0.93 1.94 16 24 N -0.31 -6.66 3.94 -188.68 -0.74 -7.40 16 25 N -0.12 -3.43 13.99 37.02 0.52 -2.91 16 26 N -0.04 -1.35 13.36 37.02 0.49 -0.86 16 27 N -0.34 -12.08 11.75 -52.05 -0.61 -12.69 16 28 C 0.26 7.17 7.85 135.75 1.07 8.23 16 29 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.06 1.57 5.19 -2.39 -0.01 1.56 16 33 H 0.05 1.70 4.75 -2.39 -0.01 1.69 16 34 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 38 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.36 14.70 5.20 -92.71 -0.48 14.22 16 41 H 0.26 14.98 8.31 -92.70 -0.77 14.21 16 42 H 0.41 7.35 6.71 -92.71 -0.62 6.73 16 43 H 0.20 0.85 6.49 -2.91 -0.02 0.83 16 44 H 0.23 -1.67 8.06 -2.91 -0.02 -1.69 16 45 H 0.23 -0.12 8.06 -2.91 -0.02 -0.15 16 Total: -1.00 -83.91 365.40 4.10 -79.81 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: -0.11 Total: 18.92 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: 6.17 Total: 8.90 kcal Atomic # 7 Polarization: -130.13 SS G_CDS: -3.81 Total: -133.95 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -0.05 Total: -18.60 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 1.90 Total: 44.92 kcal Total: -83.91 4.10 -79.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271270010.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.551 kcal (2) G-P(sol) polarization free energy of solvation -83.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.83 seconds