Wall clock time and date at job start Tue Mar 31 2020 16:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42902 * 109.47134 * 2 1 4 4 C 1.42897 * 114.00038 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.47138 * 180.02562 * 4 3 2 6 6 N 1.46899 * 109.47048 * 65.00357 * 5 4 3 7 7 C 1.49418 * 110.88043 * 289.86039 * 6 5 4 8 8 C 1.54330 * 104.64406 * 207.70576 * 7 6 5 9 9 F 1.39896 * 112.95595 * 152.49030 * 8 7 6 10 10 C 1.51364 * 108.23971 * 278.31678 * 8 7 6 11 11 O 1.21281 * 124.66468 * 302.62207 * 10 8 7 12 12 N 1.34145 * 110.67746 * 122.58986 * 10 8 7 13 13 C 1.46496 * 124.27191 * 182.31227 * 12 10 8 14 14 C 1.52998 * 109.47238 * 90.02377 * 13 12 10 15 15 C 1.50706 * 109.47348 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99302 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00436 * 179.72505 * 15 14 13 18 18 N 1.31514 * 120.00481 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 119.99745 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.47209 * 90.00365 * 19 17 15 21 21 H 1.48506 * 109.47294 * 210.00213 * 19 17 15 22 22 H 1.48501 * 109.47275 * 330.00116 * 19 17 15 23 23 C 1.46595 * 111.45071 * 2.57188 * 12 10 8 24 24 C 1.53990 * 105.97289 * 344.06240 * 23 12 10 25 25 F 1.39895 * 112.53030 * 142.77633 * 24 23 12 26 26 C 1.47296 * 111.00124 * 170.00540 * 6 5 4 27 27 H 1.09005 * 109.47187 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46991 * 299.99292 * 1 2 3 29 29 H 1.08998 * 109.47546 * 59.99338 * 1 2 3 30 30 H 1.09007 * 109.46991 * 240.00708 * 2 1 3 31 31 H 1.08998 * 109.47546 * 120.00662 * 2 1 3 32 32 H 1.09004 * 109.47001 * 60.00745 * 4 3 2 33 33 H 1.08997 * 109.47335 * 300.00496 * 4 3 2 34 34 H 1.08998 * 109.46900 * 305.00566 * 5 4 3 35 35 H 1.08998 * 109.47192 * 185.00083 * 5 4 3 36 36 H 1.09002 * 110.99040 * 88.81535 * 7 6 5 37 37 H 1.09000 * 110.34527 * 326.27092 * 7 6 5 38 38 H 1.09000 * 109.47435 * 330.02281 * 13 12 10 39 39 H 1.09002 * 109.46784 * 210.01917 * 13 12 10 40 40 H 1.09001 * 109.47671 * 59.99927 * 14 13 12 41 41 H 1.08998 * 109.47454 * 299.99925 * 14 13 12 42 42 H 0.96995 * 120.00207 * 179.97438 * 18 17 15 43 43 H 1.09000 * 110.13380 * 103.34838 * 23 12 10 44 44 H 1.09006 * 110.13577 * 225.04705 * 23 12 10 45 45 H 1.09001 * 109.80552 * 21.76169 * 26 6 5 46 46 H 1.09001 * 109.80449 * 260.88550 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 3.8253 2.9384 0.0001 6 7 3.3867 3.5617 1.2559 7 6 1.8979 3.6799 1.3002 8 6 1.6300 4.8975 2.2099 9 9 0.4248 5.5439 1.9155 10 6 1.7183 4.4412 3.6504 11 8 1.0458 3.5566 4.1363 12 7 2.6432 5.1493 4.3157 13 6 3.0067 4.9213 5.7164 14 6 4.1494 3.9064 5.7881 15 6 4.5238 3.6723 7.2290 16 1 3.9993 4.1955 8.0149 17 6 5.5321 2.7865 7.5442 18 7 5.8585 2.5818 8.8017 19 14 6.4339 1.8759 6.1851 20 1 7.6088 2.6732 5.7501 21 1 6.8910 0.5569 6.6918 22 1 5.5189 1.6736 5.0331 23 6 3.2399 6.1841 3.4658 24 6 2.8721 5.8079 2.0186 25 9 2.5955 6.9279 1.2274 26 6 3.9514 4.9145 1.3993 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 3.8332 0.9768 -0.8909 33 1 3.8340 0.9764 0.8891 34 1 3.3490 3.4419 -0.8411 35 1 4.9081 3.0256 -0.0899 36 1 1.4476 2.7839 1.7274 37 1 1.5022 3.8616 0.3009 38 1 2.1431 4.5349 6.2577 39 1 3.3268 5.8612 6.1663 40 1 5.0131 4.2928 5.2469 41 1 3.8294 2.9666 5.3382 42 1 6.5677 1.9583 9.0234 43 1 2.8280 7.1610 3.7188 44 1 4.3232 6.1903 3.5867 45 1 4.2349 5.3020 0.4207 46 1 4.8240 4.8832 2.0518 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273954322.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:33 Heat of formation + Delta-G solvation = -154.377030 kcal Electronic energy + Delta-G solvation = -30964.771402 eV Core-core repulsion = 26525.964332 eV Total energy + Delta-G solvation = -4438.807070 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -48.56473 -47.50745 -40.63434 -38.67607 -37.43765 -36.12272 -33.78190 -32.54735 -31.41522 -30.20947 -29.75829 -28.17083 -25.93988 -25.33200 -23.22377 -22.90349 -21.66607 -21.36131 -20.84364 -19.61799 -17.62236 -17.13338 -16.97271 -16.78981 -16.46797 -15.98433 -15.85953 -15.56080 -15.19185 -14.90139 -14.80193 -14.38790 -14.15228 -14.05270 -13.92583 -13.85998 -13.61593 -13.21714 -13.07912 -12.89621 -12.80225 -12.64871 -12.40716 -12.34310 -11.89453 -11.69686 -11.64652 -11.54373 -11.35705 -11.13155 -11.03921 -10.75847 -10.53190 -10.09840 -9.91680 -9.73987 -9.52563 -9.27574 -8.74987 -8.58693 -8.42172 -6.09213 -4.08852 2.54898 2.92038 3.27275 3.31163 3.36151 3.41729 3.43461 3.47135 3.61666 3.71375 4.07544 4.30024 4.42170 4.48411 4.73796 4.87652 4.92887 5.00190 5.03473 5.14915 5.20188 5.21574 5.24715 5.27248 5.30693 5.34775 5.44472 5.53488 5.61220 5.64352 5.76166 5.77252 5.87918 5.97886 6.20732 6.42785 6.48025 6.55903 6.57728 7.00961 7.01846 7.25352 7.41532 7.69853 8.21089 8.44277 8.93380 9.52360 11.03702 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.009715 B = 0.004799 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2881.479767 B = 5833.428374 C = 7154.072453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.388 6.388 4 C 0.064 3.936 5 C 0.053 3.947 6 N -0.510 5.510 7 C 0.051 3.949 8 C 0.057 3.943 9 F -0.162 7.162 10 C 0.520 3.480 11 O -0.498 6.498 12 N -0.597 5.597 13 C 0.137 3.863 14 C -0.023 4.023 15 C -0.523 4.523 16 H 0.074 0.926 17 C 0.072 3.928 18 N -0.900 5.900 19 Si 0.877 3.123 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.262 1.262 23 C 0.092 3.908 24 C 0.078 3.922 25 F -0.173 7.173 26 C 0.029 3.971 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.044 0.956 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.050 0.950 35 H 0.096 0.904 36 H 0.120 0.880 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.014 0.986 41 H 0.025 0.975 42 H 0.264 0.736 43 H 0.089 0.911 44 H 0.104 0.896 45 H 0.074 0.926 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.488 2.354 -22.089 22.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.307 6.307 4 C -0.013 4.013 5 C -0.075 4.075 6 N -0.235 5.235 7 C -0.077 4.077 8 C 0.034 3.966 9 F -0.142 7.142 10 C 0.302 3.698 11 O -0.372 6.372 12 N -0.330 5.330 13 C 0.018 3.982 14 C -0.061 4.061 15 C -0.561 4.561 16 H 0.092 0.908 17 C -0.130 4.130 18 N -0.538 5.538 19 Si 0.704 3.296 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.186 1.186 23 C -0.033 4.033 24 C 0.058 3.942 25 F -0.153 7.153 26 C -0.099 4.099 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.114 0.886 36 H 0.138 0.862 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.032 0.968 41 H 0.043 0.957 42 H 0.074 0.926 43 H 0.108 0.892 44 H 0.122 0.878 45 H 0.092 0.908 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -4.679 1.637 -21.224 21.795 hybrid contribution 0.451 0.003 -1.404 1.474 sum -4.228 1.641 -22.628 23.078 Atomic orbital electron populations 1.21750 0.93743 1.02220 1.03236 1.22435 0.95617 0.83741 0.99994 1.87903 1.20899 1.26537 1.95409 1.22510 0.81825 0.96106 1.00864 1.22388 1.00977 0.94105 0.90012 1.64326 1.06519 1.17702 1.34981 1.23642 0.88627 0.96849 0.98566 1.22716 0.81921 0.93989 0.98017 1.92917 1.45076 1.82033 1.94136 1.20069 0.80765 0.82564 0.86357 1.90749 1.45124 1.29663 1.71642 1.48277 1.38424 1.32842 1.13436 1.21761 1.00111 1.00699 0.75620 1.19891 0.93036 0.94833 0.98339 1.20935 1.18863 1.25718 0.90610 0.90767 1.24953 0.96619 0.96153 0.95300 1.69901 1.30650 1.36242 1.17053 0.86804 0.80248 0.79441 0.83084 1.20326 1.21370 1.18590 1.22431 1.01562 0.93040 0.86256 1.22449 0.95563 0.84378 0.91790 1.92919 1.94529 1.52885 1.74930 1.23204 0.96965 0.87667 1.02048 0.91212 0.91474 0.92083 0.93739 0.93123 0.92716 0.91824 0.93207 0.88555 0.86190 0.90866 0.89867 0.90366 0.96797 0.95707 0.92623 0.89248 0.87777 0.90799 0.87098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 10.28 37.16 0.38 -0.98 16 2 C 0.06 0.57 6.66 37.16 0.25 0.82 16 3 O -0.39 -4.46 7.74 -35.23 -0.27 -4.73 16 4 C 0.06 0.64 6.24 37.16 0.23 0.87 16 5 C 0.05 0.51 5.21 -3.82 -0.02 0.49 16 6 N -0.51 -6.46 5.16 -231.11 -1.19 -7.65 16 7 C 0.05 0.71 4.40 -1.72 -0.01 0.70 16 8 C 0.06 0.87 1.84 -89.60 -0.16 0.71 16 9 F -0.16 -2.60 16.90 2.25 0.04 -2.56 16 10 C 0.52 9.65 7.03 -10.94 -0.08 9.57 16 11 O -0.50 -11.01 17.21 5.56 0.10 -10.92 16 12 N -0.60 -10.24 2.92 -172.90 -0.50 -10.74 16 13 C 0.14 2.68 5.86 -4.04 -0.02 2.66 16 14 C -0.02 -0.53 4.37 -27.88 -0.12 -0.65 16 15 C -0.52 -14.56 9.66 -34.44 -0.33 -14.89 16 16 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 17 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 18 N -0.90 -27.39 13.96 55.43 0.77 -26.62 16 19 Si 0.88 21.48 27.47 -169.99 -4.67 16.81 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.26 -6.31 6.53 56.52 0.37 -5.94 16 23 C 0.09 1.19 6.68 -3.47 -0.02 1.16 16 24 C 0.08 1.00 1.85 -88.85 -0.16 0.83 16 25 F -0.17 -2.19 16.80 2.25 0.04 -2.15 16 26 C 0.03 0.32 6.26 -3.51 -0.02 0.30 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.70 8.14 -51.92 -0.42 0.27 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.04 0.36 8.14 -51.92 -0.42 -0.07 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.05 0.44 7.84 -51.93 -0.41 0.04 16 35 H 0.10 0.74 8.08 -51.93 -0.42 0.32 16 36 H 0.12 1.92 6.81 -51.93 -0.35 1.57 16 37 H 0.07 0.94 7.64 -51.93 -0.40 0.55 16 38 H 0.08 1.75 7.89 -51.93 -0.41 1.34 16 39 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 40 H 0.01 0.31 7.58 -51.93 -0.39 -0.09 16 41 H 0.02 0.63 7.18 -51.93 -0.37 0.25 16 42 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 43 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.10 1.17 7.45 -51.93 -0.39 0.78 16 45 H 0.07 0.66 7.63 -51.93 -0.40 0.26 16 46 H 0.11 1.19 7.31 -51.93 -0.38 0.81 16 LS Contribution 375.69 15.07 5.66 5.66 Total: -1.00 -33.43 375.69 -7.53 -40.97 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -7.31 Total: -1.61 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: -0.19 Total: 3.55 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: -0.92 Total: -45.01 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: -0.18 Total: -15.65 kcal Atomic # 9 Polarization: -4.79 SS G_CDS: 0.08 Total: -4.71 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.43 -7.53 -40.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273954322.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.411 kcal (2) G-P(sol) polarization free energy of solvation -33.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds