Wall clock time and date at job start Tue Mar 31 2020 16:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42902 * 109.47134 * 2 1 4 4 C 1.42897 * 114.00038 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.47138 * 180.02562 * 4 3 2 6 6 N 1.46899 * 109.47048 * 65.00357 * 5 4 3 7 7 C 1.49418 * 110.88043 * 289.86039 * 6 5 4 8 8 C 1.54330 * 104.64406 * 207.70576 * 7 6 5 9 9 F 1.39896 * 112.95595 * 152.49030 * 8 7 6 10 10 C 1.51364 * 108.23971 * 278.31678 * 8 7 6 11 11 O 1.21281 * 124.66468 * 302.62207 * 10 8 7 12 12 N 1.34145 * 110.67746 * 122.58986 * 10 8 7 13 13 C 1.46496 * 124.27191 * 182.31227 * 12 10 8 14 14 C 1.52998 * 109.47238 * 90.02377 * 13 12 10 15 15 C 1.50706 * 109.47348 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99302 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00436 * 179.72505 * 15 14 13 18 18 N 1.31514 * 120.00481 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 119.99745 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.47209 * 90.00365 * 19 17 15 21 21 H 1.48506 * 109.47294 * 210.00213 * 19 17 15 22 22 H 1.48501 * 109.47275 * 330.00116 * 19 17 15 23 23 C 1.46595 * 111.45071 * 2.57188 * 12 10 8 24 24 C 1.53990 * 105.97289 * 344.06240 * 23 12 10 25 25 F 1.39895 * 112.53030 * 142.77633 * 24 23 12 26 26 C 1.47296 * 111.00124 * 170.00540 * 6 5 4 27 27 H 1.09005 * 109.47187 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46991 * 299.99292 * 1 2 3 29 29 H 1.08998 * 109.47546 * 59.99338 * 1 2 3 30 30 H 1.09007 * 109.46991 * 240.00708 * 2 1 3 31 31 H 1.08998 * 109.47546 * 120.00662 * 2 1 3 32 32 H 1.09004 * 109.47001 * 60.00745 * 4 3 2 33 33 H 1.08997 * 109.47335 * 300.00496 * 4 3 2 34 34 H 1.08998 * 109.46900 * 305.00566 * 5 4 3 35 35 H 1.08998 * 109.47192 * 185.00083 * 5 4 3 36 36 H 1.09002 * 110.99040 * 88.81535 * 7 6 5 37 37 H 1.09000 * 110.34527 * 326.27092 * 7 6 5 38 38 H 1.09000 * 109.47435 * 330.02281 * 13 12 10 39 39 H 1.09002 * 109.46784 * 210.01917 * 13 12 10 40 40 H 1.09001 * 109.47671 * 59.99927 * 14 13 12 41 41 H 1.08998 * 109.47454 * 299.99925 * 14 13 12 42 42 H 0.96995 * 120.00207 * 179.97438 * 18 17 15 43 43 H 1.09000 * 110.13380 * 103.34838 * 23 12 10 44 44 H 1.09006 * 110.13577 * 225.04705 * 23 12 10 45 45 H 1.09001 * 109.80552 * 21.76169 * 26 6 5 46 46 H 1.09001 * 109.80449 * 260.88550 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 3.8253 2.9384 0.0001 6 7 3.3867 3.5617 1.2559 7 6 1.8979 3.6799 1.3002 8 6 1.6300 4.8975 2.2099 9 9 0.4248 5.5439 1.9155 10 6 1.7183 4.4412 3.6504 11 8 1.0458 3.5566 4.1363 12 7 2.6432 5.1493 4.3157 13 6 3.0067 4.9213 5.7164 14 6 4.1494 3.9064 5.7881 15 6 4.5238 3.6723 7.2290 16 1 3.9993 4.1955 8.0149 17 6 5.5321 2.7865 7.5442 18 7 5.8585 2.5818 8.8017 19 14 6.4339 1.8759 6.1851 20 1 7.6088 2.6732 5.7501 21 1 6.8910 0.5569 6.6918 22 1 5.5189 1.6736 5.0331 23 6 3.2399 6.1841 3.4658 24 6 2.8721 5.8079 2.0186 25 9 2.5955 6.9279 1.2274 26 6 3.9514 4.9145 1.3993 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 3.8332 0.9768 -0.8909 33 1 3.8340 0.9764 0.8891 34 1 3.3490 3.4419 -0.8411 35 1 4.9081 3.0256 -0.0899 36 1 1.4476 2.7839 1.7274 37 1 1.5022 3.8616 0.3009 38 1 2.1431 4.5349 6.2577 39 1 3.3268 5.8612 6.1663 40 1 5.0131 4.2928 5.2469 41 1 3.8294 2.9666 5.3382 42 1 6.5677 1.9583 9.0234 43 1 2.8280 7.1610 3.7188 44 1 4.3232 6.1903 3.5867 45 1 4.2349 5.3020 0.4207 46 1 4.8240 4.8832 2.0518 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273954322.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:32 Heat of formation + Delta-G solvation = -177.897154 kcal Electronic energy + Delta-G solvation = -30965.791311 eV Core-core repulsion = 26525.964332 eV Total energy + Delta-G solvation = -4439.826979 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.68091 -48.62385 -41.88455 -39.61754 -38.46199 -37.51463 -35.52128 -33.99526 -32.61742 -31.44097 -30.85830 -29.29182 -27.10460 -26.89423 -24.35009 -23.67772 -23.05020 -22.31731 -22.18395 -21.03757 -19.11582 -18.71155 -18.00153 -17.79723 -17.61511 -17.18855 -16.91478 -16.59822 -16.42349 -16.24946 -15.92960 -15.67914 -15.57416 -15.30191 -15.01575 -14.84197 -14.77869 -14.63559 -14.56503 -14.20448 -13.94369 -13.60651 -13.54087 -13.49547 -13.22239 -12.90843 -12.81507 -12.66356 -12.42881 -12.26144 -12.11541 -12.03221 -11.92411 -11.75483 -11.72593 -11.50305 -10.91456 -10.76935 -10.51360 -9.89176 -9.61368 -8.30195 -6.35393 1.12796 1.33868 1.39273 1.51648 1.58485 2.22449 2.36191 2.45507 2.53421 2.62002 2.78192 3.04352 3.05528 3.26265 3.46654 3.96088 4.00341 4.14588 4.14908 4.20922 4.26913 4.32161 4.33271 4.39556 4.48043 4.49493 4.49697 4.57215 4.62320 4.65362 4.73800 4.76480 4.84804 4.93043 5.02067 5.02246 5.24101 5.26114 5.43033 5.52827 5.62867 5.77205 5.89275 6.22336 6.28043 6.70256 6.79047 7.29811 8.85957 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.009715 B = 0.004799 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2881.479767 B = 5833.428374 C = 7154.072453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.054 3.946 3 O -0.408 6.408 4 C 0.059 3.941 5 C 0.053 3.947 6 N -0.531 5.531 7 C 0.062 3.938 8 C 0.053 3.947 9 F -0.169 7.169 10 C 0.508 3.492 11 O -0.549 6.549 12 N -0.595 5.595 13 C 0.147 3.853 14 C -0.011 4.011 15 C -0.532 4.532 16 H 0.040 0.960 17 C 0.012 3.988 18 N -0.947 5.947 19 Si 0.947 3.053 20 H -0.253 1.253 21 H -0.288 1.288 22 H -0.257 1.257 23 C 0.084 3.916 24 C 0.092 3.908 25 F -0.168 7.168 26 C 0.030 3.970 27 H 0.087 0.913 28 H 0.044 0.956 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.039 0.961 32 H 0.081 0.919 33 H 0.044 0.956 34 H 0.062 0.938 35 H 0.123 0.877 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.057 0.943 39 H 0.103 0.897 40 H 0.036 0.964 41 H 0.002 0.998 42 H 0.267 0.733 43 H 0.110 0.890 44 H 0.132 0.868 45 H 0.104 0.896 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.529 3.303 -25.400 25.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.022 4.022 3 O -0.328 6.328 4 C -0.017 4.017 5 C -0.074 4.074 6 N -0.257 5.257 7 C -0.066 4.066 8 C 0.030 3.970 9 F -0.149 7.149 10 C 0.292 3.708 11 O -0.426 6.426 12 N -0.327 5.327 13 C 0.027 3.973 14 C -0.049 4.049 15 C -0.571 4.571 16 H 0.058 0.942 17 C -0.186 4.186 18 N -0.587 5.587 19 Si 0.770 3.230 20 H -0.178 1.178 21 H -0.214 1.214 22 H -0.181 1.181 23 C -0.039 4.039 24 C 0.072 3.928 25 F -0.148 7.148 26 C -0.097 4.097 27 H 0.106 0.894 28 H 0.063 0.937 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.058 0.942 32 H 0.099 0.901 33 H 0.062 0.938 34 H 0.080 0.920 35 H 0.141 0.859 36 H 0.108 0.892 37 H 0.102 0.898 38 H 0.076 0.924 39 H 0.121 0.879 40 H 0.055 0.945 41 H 0.021 0.979 42 H 0.076 0.924 43 H 0.128 0.872 44 H 0.149 0.851 45 H 0.122 0.878 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.705 2.634 -24.566 24.854 hybrid contribution -0.234 -0.271 -0.298 0.466 sum -2.939 2.363 -24.863 25.148 Atomic orbital electron populations 1.21755 0.93554 1.03125 1.02303 1.22539 0.95875 0.83328 1.00448 1.87883 1.21960 1.27421 1.95510 1.22644 0.81111 0.96813 1.01156 1.22547 1.02527 0.93372 0.88979 1.64314 1.05214 1.18954 1.37183 1.23420 0.90051 0.94864 0.98245 1.22780 0.82840 0.95625 0.95797 1.92897 1.45887 1.82181 1.93962 1.20722 0.80282 0.81917 0.87835 1.90709 1.47000 1.31860 1.73057 1.48242 1.38175 1.33431 1.12850 1.21402 0.97835 1.00726 0.77341 1.19712 0.94944 0.94962 0.95309 1.21261 1.18307 1.25213 0.92287 0.94167 1.25894 0.97742 0.97159 0.97781 1.70047 1.31745 1.37435 1.19464 0.85710 0.79456 0.78104 0.79730 1.17762 1.21414 1.18093 1.22814 1.03077 0.92435 0.85552 1.22393 0.94246 0.84168 0.91958 1.92937 1.94487 1.52650 1.74745 1.23326 0.96146 0.86412 1.03819 0.89436 0.93722 0.91599 0.91583 0.94248 0.90090 0.93782 0.92028 0.85938 0.89155 0.89840 0.92414 0.87920 0.94544 0.97945 0.92400 0.87161 0.85051 0.87776 0.86052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 10.28 71.98 0.74 -1.94 16 2 C 0.05 1.03 6.66 71.98 0.48 1.50 16 3 O -0.41 -9.07 7.74 -148.98 -1.15 -10.22 16 4 C 0.06 1.07 6.24 71.98 0.45 1.52 16 5 C 0.05 0.84 5.21 86.30 0.45 1.29 16 6 N -0.53 -12.11 5.16 -885.09 -4.57 -16.68 16 7 C 0.06 1.69 4.40 86.26 0.38 2.07 16 8 C 0.05 1.57 1.84 -10.13 -0.02 1.55 16 9 F -0.17 -5.35 16.90 44.97 0.76 -4.59 16 10 C 0.51 18.97 7.03 87.97 0.62 19.58 16 11 O -0.55 -25.43 17.21 -3.03 -0.05 -25.48 16 12 N -0.60 -19.72 2.92 -819.68 -2.39 -22.11 16 13 C 0.15 5.72 5.86 86.38 0.51 6.23 16 14 C -0.01 -0.50 4.37 29.85 0.13 -0.37 16 15 C -0.53 -30.10 9.66 25.60 0.25 -29.86 16 16 H 0.04 2.47 7.99 -2.91 -0.02 2.45 16 17 C 0.01 0.68 5.47 84.65 0.46 1.14 16 18 N -0.95 -58.69 13.96 21.45 0.30 -58.40 16 19 Si 0.95 43.84 27.47 68.60 1.88 45.72 16 20 H -0.25 -10.73 7.11 99.48 0.71 -10.02 16 21 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 22 H -0.26 -11.62 6.53 99.48 0.65 -10.97 16 23 C 0.08 1.89 6.68 86.70 0.58 2.47 16 24 C 0.09 2.06 1.85 -9.65 -0.02 2.04 16 25 F -0.17 -3.65 16.80 44.97 0.76 -2.89 16 26 C 0.03 0.55 6.26 86.29 0.54 1.09 16 27 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 28 H 0.04 0.98 8.14 -2.38 -0.02 0.96 16 29 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 33 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.06 0.86 7.84 -2.39 -0.02 0.84 16 35 H 0.12 1.31 8.08 -2.39 -0.02 1.29 16 36 H 0.09 3.01 6.81 -2.39 -0.02 2.99 16 37 H 0.08 2.04 7.64 -2.39 -0.02 2.03 16 38 H 0.06 2.52 7.89 -2.39 -0.02 2.50 16 39 H 0.10 3.47 8.14 -2.39 -0.02 3.45 16 40 H 0.04 1.52 7.58 -2.39 -0.02 1.50 16 41 H 0.00 0.11 7.18 -2.39 -0.02 0.09 16 42 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 43 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 44 H 0.13 2.32 7.45 -2.38 -0.02 2.30 16 45 H 0.10 1.28 7.63 -2.39 -0.02 1.26 16 46 H 0.12 1.99 7.31 -2.39 -0.02 1.97 16 Total: -1.00 -75.61 375.69 1.99 -73.61 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: 0.92 Total: 12.72 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: 5.55 Total: 8.32 kcal Atomic # 7 Polarization: -90.53 SS G_CDS: -6.66 Total: -97.19 kcal Atomic # 8 Polarization: -34.50 SS G_CDS: -1.21 Total: -35.71 kcal Atomic # 9 Polarization: -8.99 SS G_CDS: 1.52 Total: -7.48 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 1.88 Total: 45.72 kcal Total: -75.61 1.99 -73.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273954322.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.283 kcal (2) G-P(sol) polarization free energy of solvation -75.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds