Wall clock time and date at job start Tue Mar 31 2020 16:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42904 * 109.46806 * 2 1 4 4 C 1.42902 * 113.99963 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47311 * 180.02562 * 4 3 2 6 6 N 1.46502 * 109.47045 * 64.99810 * 5 4 3 7 7 C 1.46566 * 124.29535 * 90.00674 * 6 5 4 8 8 C 1.54514 * 106.03323 * 196.11626 * 7 6 5 9 9 F 1.39901 * 114.29562 * 100.98126 * 8 7 6 10 10 C 1.54210 * 108.10313 * 228.41456 * 8 7 6 11 11 N 1.47632 * 105.70078 * 79.60719 * 10 8 7 12 12 C 1.46896 * 111.05612 * 152.02518 * 11 10 8 13 13 C 1.53002 * 109.47200 * 55.20120 * 12 11 10 14 14 C 1.50701 * 109.47504 * 174.71443 * 13 12 11 15 15 H 1.08004 * 119.99358 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00355 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99821 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00103 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.46872 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.46786 * 119.99775 * 18 16 14 21 21 H 1.48494 * 109.46841 * 239.99957 * 18 16 14 22 22 C 1.47284 * 107.58825 * 30.36602 * 11 10 8 23 23 C 1.53245 * 107.79467 * 339.94027 * 22 11 10 24 24 F 1.39899 * 111.46938 * 123.25755 * 23 22 11 25 25 C 1.35980 * 124.02799 * 270.16805 * 6 5 4 26 26 O 1.21280 * 125.71530 * 357.96679 * 25 6 5 27 27 H 1.09004 * 109.47306 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47545 * 300.00167 * 1 2 3 29 29 H 1.09002 * 109.47660 * 59.99985 * 1 2 3 30 30 H 1.08998 * 109.47262 * 240.00094 * 2 1 3 31 31 H 1.08998 * 109.46948 * 120.00044 * 2 1 3 32 32 H 1.09000 * 109.47137 * 60.00079 * 4 3 2 33 33 H 1.08999 * 109.47143 * 300.00278 * 4 3 2 34 34 H 1.09004 * 109.46983 * 304.99990 * 5 4 3 35 35 H 1.08993 * 109.47421 * 184.99896 * 5 4 3 36 36 H 1.08995 * 110.14591 * 76.96714 * 7 6 5 37 37 H 1.09007 * 110.13533 * 315.25573 * 7 6 5 38 38 H 1.09003 * 110.20681 * 198.62219 * 10 8 7 39 39 H 1.08998 * 110.20913 * 320.51777 * 10 8 7 40 40 H 1.08998 * 109.47295 * 175.19756 * 12 11 10 41 41 H 1.09001 * 109.47878 * 295.20073 * 12 11 10 42 42 H 1.09002 * 109.47124 * 294.71279 * 13 12 11 43 43 H 1.09004 * 109.47381 * 54.70959 * 13 12 11 44 44 H 0.96991 * 120.00215 * 180.02562 * 17 16 14 45 45 H 1.09003 * 109.80550 * 220.34902 * 22 11 10 46 46 H 1.09001 * 109.80448 * 99.53113 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8253 2.9385 0.0012 6 7 3.3866 3.5604 1.2530 7 6 4.1995 3.6280 2.4707 8 6 3.2232 3.9754 3.6168 9 9 2.8451 2.8812 4.4023 10 6 3.8325 5.1351 4.4304 11 7 3.5479 6.3592 3.6558 12 6 3.4529 7.5310 4.5366 13 6 4.7318 7.6489 5.3682 14 6 4.6903 8.9205 6.1760 15 1 3.8373 9.5789 6.1031 16 6 5.7413 9.2434 7.0080 17 7 6.7798 8.4414 7.0971 18 14 5.6902 10.8199 8.0086 19 1 4.4225 11.5416 7.7308 20 1 5.7664 10.4910 9.4547 21 1 6.8413 11.6806 7.6353 22 6 2.2859 6.1422 2.9282 23 6 2.0451 4.6309 2.8486 24 9 0.8099 4.2793 3.4032 25 6 2.1709 4.1440 1.4276 26 8 1.3126 4.2596 0.5786 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8340 0.9766 -0.8892 33 1 3.8332 0.9768 0.8908 34 1 3.3497 3.4417 -0.8407 35 1 4.9080 3.0256 -0.0879 36 1 4.9567 4.4061 2.3739 37 1 4.6728 2.6645 2.6599 38 1 3.3626 5.1939 5.4122 39 1 4.9086 4.9970 4.5350 40 1 3.3278 8.4300 3.9332 41 1 2.5965 7.4175 5.2013 42 1 4.8084 6.7941 6.0402 43 1 5.5963 7.6680 4.7046 44 1 7.5190 8.6682 7.6826 45 1 2.3629 6.5573 1.9232 46 1 1.4646 6.6194 3.4628 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274038749.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:29 Heat of formation + Delta-G solvation = -158.786750 kcal Electronic energy + Delta-G solvation = -30302.736323 eV Core-core repulsion = 25863.738033 eV Total energy + Delta-G solvation = -4438.998290 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -48.43646 -47.38618 -40.62568 -38.43553 -37.93391 -36.16986 -33.74915 -32.64118 -31.34799 -30.05582 -29.60345 -27.98909 -26.13792 -24.89310 -23.41451 -23.01673 -22.03795 -21.28692 -20.19073 -20.00485 -17.69552 -17.24168 -16.71910 -16.65271 -16.33722 -16.11747 -15.79273 -15.43694 -15.41441 -15.04690 -14.68054 -14.43617 -14.25987 -13.93985 -13.85217 -13.73597 -13.55356 -13.33274 -12.99924 -12.95694 -12.63296 -12.55213 -12.27132 -12.18356 -12.11782 -11.96298 -11.59314 -11.31434 -11.20024 -11.07774 -10.87320 -10.83025 -10.58847 -10.13067 -9.88362 -9.75720 -9.49735 -9.22908 -8.98176 -8.45677 -8.20522 -6.08764 -4.11284 2.20218 2.51787 3.26985 3.34928 3.37155 3.38846 3.46327 3.65828 3.71268 3.90755 4.21723 4.40275 4.41589 4.62725 4.67426 4.73572 4.81123 4.89794 5.00215 5.05139 5.08615 5.10900 5.23599 5.28326 5.42305 5.46504 5.51447 5.58272 5.63517 5.68457 5.69778 5.90902 5.92362 6.08976 6.15476 6.21562 6.67499 6.71890 6.97156 7.04098 7.08566 7.57271 7.71745 7.85227 7.92260 8.30806 8.94971 9.53357 11.02633 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.026391 B = 0.002691 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.725880 B =10402.403775 C =10582.478690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.375 6.375 4 C 0.040 3.960 5 C 0.131 3.869 6 N -0.613 5.613 7 C 0.097 3.903 8 C 0.081 3.919 9 F -0.168 7.168 10 C 0.036 3.964 11 N -0.511 5.511 12 C 0.054 3.946 13 C 0.024 3.976 14 C -0.523 4.523 15 H 0.056 0.944 16 C 0.059 3.941 17 N -0.893 5.893 18 Si 0.893 3.107 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.283 1.283 22 C 0.034 3.966 23 C 0.062 3.938 24 F -0.168 7.168 25 C 0.528 3.472 26 O -0.484 6.484 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.046 0.954 31 H 0.045 0.955 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.114 0.886 37 H 0.093 0.907 38 H 0.071 0.929 39 H 0.113 0.887 40 H 0.074 0.926 41 H 0.029 0.971 42 H 0.018 0.982 43 H 0.028 0.972 44 H 0.261 0.739 45 H 0.100 0.900 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.912 -16.541 -13.986 22.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.018 4.018 3 O -0.294 6.294 4 C -0.038 4.038 5 C 0.010 3.990 6 N -0.349 5.349 7 C -0.026 4.026 8 C 0.061 3.939 9 F -0.148 7.148 10 C -0.092 4.092 11 N -0.236 5.236 12 C -0.072 4.072 13 C -0.013 4.013 14 C -0.562 4.562 15 H 0.074 0.926 16 C -0.142 4.142 17 N -0.532 5.532 18 Si 0.721 3.279 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.209 1.209 22 C -0.095 4.095 23 C 0.038 3.962 24 F -0.148 7.148 25 C 0.312 3.688 26 O -0.355 6.355 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.113 0.887 35 H 0.120 0.880 36 H 0.132 0.868 37 H 0.111 0.889 38 H 0.089 0.911 39 H 0.131 0.869 40 H 0.092 0.908 41 H 0.048 0.952 42 H 0.036 0.964 43 H 0.047 0.953 44 H 0.070 0.930 45 H 0.118 0.882 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.958 -16.282 -14.761 22.530 hybrid contribution -0.539 0.173 1.426 1.534 sum -5.497 -16.109 -13.335 21.623 Atomic orbital electron populations 1.21719 0.93688 1.01941 1.03450 1.22439 0.95843 0.83898 0.99644 1.88064 1.20063 1.26011 1.95299 1.22993 0.82782 0.97371 1.00628 1.21487 1.00431 0.91303 0.85793 1.48237 1.15984 1.57935 1.12769 1.22726 0.93495 1.04723 0.81664 1.22641 0.93966 0.85873 0.91469 1.92915 1.91989 1.54680 1.75216 1.23325 1.03214 0.86616 0.96087 1.64151 1.28418 1.03547 1.27457 1.22672 1.00991 0.89915 0.93599 1.19165 0.91100 0.97181 0.93849 1.21171 1.04021 1.06291 1.24695 0.92571 1.24979 0.95408 0.96948 0.96891 1.69956 1.07724 1.36939 1.38545 0.86520 0.78061 0.83417 0.79922 1.19725 1.21000 1.20948 1.23064 0.94485 0.89404 1.02549 1.22560 0.81721 0.98619 0.93251 1.92942 1.42961 1.93188 1.85728 1.20499 0.82065 0.77375 0.88824 1.90747 1.41617 1.55040 1.48146 0.91260 0.91763 0.91816 0.93626 0.93659 0.92094 0.93001 0.88718 0.88046 0.86837 0.88888 0.91068 0.86940 0.90785 0.95227 0.96378 0.95318 0.92954 0.88215 0.90480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 10.28 37.16 0.38 -1.00 16 2 C 0.06 0.55 6.66 37.16 0.25 0.79 16 3 O -0.38 -4.57 10.00 -35.23 -0.35 -4.92 16 4 C 0.04 0.35 6.28 37.15 0.23 0.58 16 5 C 0.13 1.17 6.35 -4.04 -0.03 1.14 16 6 N -0.61 -7.27 2.93 -172.33 -0.50 -7.78 16 7 C 0.10 1.04 6.69 -3.21 -0.02 1.02 16 8 C 0.08 1.11 2.03 -88.05 -0.18 0.94 16 9 F -0.17 -2.52 16.99 2.25 0.04 -2.48 16 10 C 0.04 0.55 4.25 -2.79 -0.01 0.53 16 11 N -0.51 -8.29 5.24 -232.73 -1.22 -9.51 16 12 C 0.05 1.05 4.71 -3.83 -0.02 1.03 16 13 C 0.02 0.58 4.64 -27.88 -0.13 0.45 16 14 C -0.52 -14.07 9.11 -34.44 -0.31 -14.38 16 15 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.89 -25.63 13.29 55.43 0.74 -24.89 16 18 Si 0.89 21.00 29.54 -169.99 -5.02 15.97 16 19 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 C 0.03 0.51 6.26 -3.49 -0.02 0.49 16 23 C 0.06 0.95 1.68 -90.48 -0.15 0.79 16 24 F -0.17 -2.91 16.68 2.25 0.04 -2.88 16 25 C 0.53 8.11 6.65 -10.42 -0.07 8.04 16 26 O -0.48 -8.80 17.66 5.56 0.10 -8.71 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.09 0.94 7.95 -51.93 -0.41 0.52 16 35 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.11 1.13 7.55 -51.93 -0.39 0.74 16 37 H 0.09 0.79 8.14 -51.92 -0.42 0.36 16 38 H 0.07 1.17 7.67 -51.93 -0.40 0.78 16 39 H 0.11 1.62 7.84 -51.93 -0.41 1.21 16 40 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 41 H 0.03 0.57 7.96 -51.93 -0.41 0.16 16 42 H 0.02 0.45 7.14 -51.93 -0.37 0.08 16 43 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 45 H 0.10 1.43 7.69 -51.93 -0.40 1.03 16 46 H 0.08 1.16 7.49 -51.93 -0.39 0.77 16 LS Contribution 381.60 15.07 5.75 5.75 Total: -1.00 -32.60 381.60 -7.99 -40.58 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -7.37 Total: -3.10 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: -0.18 Total: 1.97 kcal Atomic # 7 Polarization: -41.20 SS G_CDS: -0.99 Total: -42.18 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: -0.25 Total: -13.63 kcal Atomic # 9 Polarization: -5.44 SS G_CDS: 0.08 Total: -5.36 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.60 -7.99 -40.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274038749.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.204 kcal (2) G-P(sol) polarization free energy of solvation -32.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds