Wall clock time and date at job start Tue Mar 31 2020 17:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99839 * 2 1 4 4 C 1.53006 * 109.47141 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47106 * 180.02562 * 4 3 2 6 6 N 1.46495 * 109.46935 * 180.02562 * 5 4 3 7 7 C 1.46759 * 124.34154 * 269.98335 * 6 5 4 8 8 C 1.54269 * 105.51373 * 197.29841 * 7 6 5 9 9 F 1.39892 * 112.51731 * 95.49029 * 8 7 6 10 10 C 1.53451 * 110.25778 * 223.46192 * 8 7 6 11 11 N 1.47030 * 108.07439 * 92.73380 * 10 8 7 12 12 C 1.46903 * 110.99929 * 236.00940 * 11 10 8 13 13 C 1.53001 * 109.46874 * 170.00150 * 12 11 10 14 14 C 1.50704 * 109.46918 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99582 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00132 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99879 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00385 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46708 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47492 * 119.99369 * 18 16 14 21 21 H 1.48491 * 109.47304 * 240.00049 * 18 16 14 22 22 C 1.49210 * 109.42668 * 358.55456 * 11 10 8 23 23 C 1.54028 * 105.79960 * 18.36579 * 22 11 10 24 24 F 1.39905 * 112.98426 * 95.79417 * 23 22 11 25 25 C 1.34370 * 124.34372 * 90.02810 * 6 5 4 26 26 O 1.21290 * 124.88201 * 359.92951 * 25 6 5 27 27 H 1.09002 * 109.47063 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46941 * 300.00015 * 1 2 3 29 29 H 1.09000 * 109.47395 * 59.99246 * 1 2 3 30 30 H 1.09008 * 109.46970 * 60.00468 * 3 2 1 31 31 H 1.08997 * 109.47841 * 300.00423 * 3 2 1 32 32 H 1.08995 * 109.46781 * 60.00031 * 4 3 2 33 33 H 1.08998 * 109.46863 * 300.00255 * 4 3 2 34 34 H 1.09008 * 109.47185 * 60.00199 * 5 4 3 35 35 H 1.08997 * 109.47663 * 300.00132 * 5 4 3 36 36 H 1.09002 * 110.24334 * 316.30583 * 7 6 5 37 37 H 1.09003 * 110.24229 * 78.28723 * 7 6 5 38 38 H 1.08995 * 109.74968 * 212.39296 * 10 8 7 39 39 H 1.08993 * 109.75079 * 333.07226 * 10 8 7 40 40 H 1.08994 * 109.46927 * 289.99463 * 12 11 10 41 41 H 1.08993 * 109.47113 * 50.00028 * 12 11 10 42 42 H 1.09006 * 109.47177 * 299.99375 * 13 12 11 43 43 H 1.08992 * 109.47982 * 59.99612 * 13 12 11 44 44 H 0.97000 * 119.99726 * 179.97438 * 17 16 14 45 45 H 1.08999 * 110.29564 * 259.46668 * 22 11 10 46 46 H 1.08994 * 110.69874 * 137.48275 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 4.1577 2.5825 0.0000 6 7 5.6181 2.4668 -0.0012 7 6 6.4444 2.4008 1.2098 8 6 7.8792 2.7307 0.7489 9 9 8.2001 4.0814 0.9216 10 6 8.8817 1.7720 1.4050 11 7 9.0880 0.6353 0.4955 12 6 8.7960 -0.6373 1.1687 13 6 8.7777 -1.7674 0.1374 14 6 8.4776 -3.0728 0.8279 15 1 8.3164 -3.0943 1.8956 16 6 8.4097 -4.2398 0.0968 17 7 8.6065 -4.2136 -1.2033 18 14 8.0384 -5.8581 0.9528 19 1 7.8595 -5.6188 2.4075 20 1 6.7943 -6.4417 0.3900 21 1 9.1667 -6.8000 0.7417 22 6 8.2285 0.8039 -0.7125 23 6 7.8365 2.2931 -0.7437 24 9 8.6684 3.0599 -1.5668 25 6 6.3730 2.4084 -1.1113 26 8 5.9432 2.4426 -2.2450 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.6886 1.8464 0.8901 31 1 1.6886 1.8465 -0.8899 32 1 3.8567 0.6440 -0.8908 33 1 3.8574 0.6436 0.8891 34 1 3.8364 3.1228 0.8905 35 1 3.8358 3.1240 -0.8895 36 1 6.1042 3.1361 1.9391 37 1 6.4069 1.3990 1.6379 38 1 9.8280 2.2863 1.5722 39 1 8.4833 1.4160 2.3550 40 1 9.5650 -0.8386 1.9145 41 1 7.8236 -0.5753 1.6570 42 1 8.0087 -1.5662 -0.6085 43 1 9.7501 -1.8295 -0.3510 44 1 8.5591 -5.0347 -1.7175 45 1 7.3350 0.1852 -0.6302 46 1 8.7795 0.5448 -1.6165 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274040150.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:21 Heat of formation + Delta-G solvation = -156.848378 kcal Electronic energy + Delta-G solvation = -30254.997804 eV Core-core repulsion = 25816.083568 eV Total energy + Delta-G solvation = -4438.914236 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -48.44333 -47.42810 -40.89839 -38.34498 -38.07667 -36.38077 -34.15248 -33.03188 -31.23269 -29.94891 -29.02157 -27.23791 -26.24091 -25.62872 -24.34192 -22.62592 -22.00627 -21.28863 -20.19236 -19.90239 -17.78489 -17.23146 -16.73170 -16.50313 -16.42492 -16.25991 -15.77867 -15.48681 -15.35545 -15.24873 -14.90089 -14.53818 -14.50513 -14.18839 -14.03037 -13.90832 -13.86620 -13.27374 -13.16596 -12.68104 -12.57596 -12.56120 -12.40762 -12.16003 -12.06096 -11.90515 -11.50534 -11.34830 -11.19584 -11.10250 -10.99134 -10.73234 -10.58340 -10.18316 -9.93122 -9.85627 -9.52203 -9.22697 -9.18899 -8.44883 -8.09819 -6.06745 -4.10519 2.11605 2.32616 3.27858 3.31060 3.35636 3.38166 3.49564 3.52822 3.59377 4.01060 4.16630 4.27680 4.35416 4.44039 4.57618 4.77774 4.81728 4.92207 4.97663 4.98455 5.06920 5.09826 5.14789 5.20890 5.23953 5.29824 5.38867 5.42890 5.66181 5.71883 5.76116 5.89842 5.92845 6.06335 6.11461 6.14501 6.57131 6.67346 6.90448 7.01897 7.13120 7.57009 7.71100 7.72439 7.93324 8.30284 8.95791 9.54348 11.04479 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.007155 B = 0.004742 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3912.588045 B = 5903.089858 C = 8764.862941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.388 6.388 3 C 0.067 3.933 4 C -0.143 4.143 5 C 0.134 3.866 6 N -0.611 5.611 7 C 0.086 3.914 8 C 0.074 3.926 9 F -0.170 7.170 10 C 0.037 3.963 11 N -0.516 5.516 12 C 0.053 3.947 13 C 0.019 3.981 14 C -0.525 4.525 15 H 0.056 0.944 16 C 0.061 3.939 17 N -0.890 5.890 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.283 1.283 22 C 0.047 3.953 23 C 0.064 3.936 24 F -0.157 7.157 25 C 0.514 3.486 26 O -0.494 6.494 27 H 0.087 0.913 28 H 0.040 0.960 29 H 0.041 0.959 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.027 0.973 42 H 0.019 0.981 43 H 0.028 0.972 44 H 0.261 0.739 45 H 0.085 0.915 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.258 15.842 6.858 20.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C -0.010 4.010 4 C -0.182 4.182 5 C 0.012 3.988 6 N -0.346 5.346 7 C -0.037 4.037 8 C 0.054 3.946 9 F -0.150 7.150 10 C -0.092 4.092 11 N -0.240 5.240 12 C -0.073 4.073 13 C -0.018 4.018 14 C -0.564 4.564 15 H 0.074 0.926 16 C -0.141 4.141 17 N -0.528 5.528 18 Si 0.720 3.280 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.209 1.209 22 C -0.081 4.081 23 C 0.040 3.960 24 F -0.137 7.137 25 C 0.298 3.702 26 O -0.366 6.366 27 H 0.105 0.895 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.117 0.883 39 H 0.099 0.901 40 H 0.093 0.907 41 H 0.045 0.955 42 H 0.037 0.963 43 H 0.047 0.953 44 H 0.071 0.929 45 H 0.103 0.897 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -10.913 15.622 5.924 19.956 hybrid contribution -1.177 -0.510 0.615 1.423 sum -12.091 15.112 6.539 20.429 Atomic orbital electron populations 1.22751 0.80937 1.02959 0.99818 1.87940 1.19745 1.27614 1.95373 1.22371 0.93422 0.85063 1.00191 1.21950 0.93521 0.97682 1.04999 1.21315 0.76704 0.96838 1.03898 1.47986 1.06771 1.73369 1.06429 1.22849 0.87678 1.04714 0.88462 1.22994 0.96797 0.79681 0.95151 1.92916 1.93821 1.32352 1.95894 1.23116 0.98306 0.91489 0.96309 1.64007 1.52173 1.02548 1.05316 1.22705 0.98410 0.87669 0.98520 1.19246 0.98226 0.90855 0.93476 1.21125 1.48950 0.92095 0.94222 0.92572 1.24986 0.95166 0.99189 0.94806 1.69969 1.49325 1.27847 1.05699 0.86535 0.77982 0.83767 0.79717 1.19738 1.20979 1.20921 1.23599 0.98686 0.88191 0.97602 1.22830 0.88837 0.95096 0.89216 1.92943 1.71667 1.76202 1.72866 1.20620 0.88197 0.76312 0.85106 1.90769 1.77362 1.48000 1.20511 0.89478 0.94131 0.94069 0.93186 0.93061 0.89998 0.90234 0.89528 0.89284 0.87858 0.88014 0.88285 0.90078 0.90723 0.95461 0.96293 0.95315 0.92878 0.89683 0.86913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.39 -4.64 10.70 -35.23 -0.38 -5.01 16 3 C 0.07 0.62 5.94 37.16 0.22 0.84 16 4 C -0.14 -1.52 5.91 -26.73 -0.16 -1.68 16 5 C 0.13 1.26 5.93 -4.05 -0.02 1.23 16 6 N -0.61 -7.35 2.93 -172.54 -0.51 -7.86 16 7 C 0.09 0.87 6.49 -3.24 -0.02 0.85 16 8 C 0.07 0.94 1.86 -88.34 -0.16 0.77 16 9 F -0.17 -2.24 17.07 2.25 0.04 -2.20 16 10 C 0.04 0.46 6.17 -3.52 -0.02 0.44 16 11 N -0.52 -8.48 5.32 -231.56 -1.23 -9.71 16 12 C 0.05 0.99 4.78 -3.82 -0.02 0.97 16 13 C 0.02 0.47 4.61 -27.88 -0.13 0.34 16 14 C -0.53 -14.12 9.11 -34.44 -0.31 -14.44 16 15 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 18 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 19 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 C 0.05 0.80 4.86 -2.00 -0.01 0.79 16 23 C 0.06 1.00 1.79 -89.54 -0.16 0.84 16 24 F -0.16 -2.75 17.05 2.25 0.04 -2.71 16 25 C 0.51 8.14 6.85 -10.85 -0.07 8.07 16 26 O -0.49 -9.36 17.59 5.55 0.10 -9.26 16 27 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.05 0.36 8.14 -51.92 -0.42 -0.06 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.09 0.54 8.14 -51.92 -0.42 0.12 16 35 H 0.09 0.87 7.92 -51.93 -0.41 0.46 16 36 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.10 0.97 7.61 -51.93 -0.40 0.58 16 38 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.08 0.84 7.00 -51.93 -0.36 0.48 16 40 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 41 H 0.03 0.47 7.95 -51.93 -0.41 0.06 16 42 H 0.02 0.48 6.27 -51.93 -0.33 0.16 16 43 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 45 H 0.09 1.52 6.20 -51.93 -0.32 1.20 16 46 H 0.11 2.06 8.14 -51.93 -0.42 1.64 16 LS Contribution 380.41 15.07 5.73 5.73 Total: -1.00 -33.13 380.41 -7.62 -40.75 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -7.27 Total: -2.36 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: 0.14 Total: 1.99 kcal Atomic # 7 Polarization: -42.01 SS G_CDS: -1.00 Total: -43.01 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -0.28 Total: -14.28 kcal Atomic # 9 Polarization: -4.99 SS G_CDS: 0.08 Total: -4.91 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.13 -7.62 -40.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040150.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.102 kcal (2) G-P(sol) polarization free energy of solvation -33.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds