Wall clock time and date at job start Tue Mar 31 2020 17:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99839 * 2 1 4 4 C 1.53006 * 109.47141 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47106 * 180.02562 * 4 3 2 6 6 N 1.46495 * 109.46935 * 180.02562 * 5 4 3 7 7 C 1.46759 * 124.34154 * 269.98335 * 6 5 4 8 8 C 1.54269 * 105.51373 * 197.29841 * 7 6 5 9 9 F 1.39892 * 112.51731 * 95.49029 * 8 7 6 10 10 C 1.53451 * 110.25778 * 223.46192 * 8 7 6 11 11 N 1.47030 * 108.07439 * 92.73380 * 10 8 7 12 12 C 1.46903 * 110.99929 * 236.00940 * 11 10 8 13 13 C 1.53001 * 109.46874 * 170.00150 * 12 11 10 14 14 C 1.50704 * 109.46918 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99582 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00132 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99879 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00385 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46708 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47492 * 119.99369 * 18 16 14 21 21 H 1.48491 * 109.47304 * 240.00049 * 18 16 14 22 22 C 1.49210 * 109.42668 * 358.55456 * 11 10 8 23 23 C 1.54028 * 105.79960 * 18.36579 * 22 11 10 24 24 F 1.39905 * 112.98426 * 95.79417 * 23 22 11 25 25 C 1.34370 * 124.34372 * 90.02810 * 6 5 4 26 26 O 1.21290 * 124.88201 * 359.92951 * 25 6 5 27 27 H 1.09002 * 109.47063 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46941 * 300.00015 * 1 2 3 29 29 H 1.09000 * 109.47395 * 59.99246 * 1 2 3 30 30 H 1.09008 * 109.46970 * 60.00468 * 3 2 1 31 31 H 1.08997 * 109.47841 * 300.00423 * 3 2 1 32 32 H 1.08995 * 109.46781 * 60.00031 * 4 3 2 33 33 H 1.08998 * 109.46863 * 300.00255 * 4 3 2 34 34 H 1.09008 * 109.47185 * 60.00199 * 5 4 3 35 35 H 1.08997 * 109.47663 * 300.00132 * 5 4 3 36 36 H 1.09002 * 110.24334 * 316.30583 * 7 6 5 37 37 H 1.09003 * 110.24229 * 78.28723 * 7 6 5 38 38 H 1.08995 * 109.74968 * 212.39296 * 10 8 7 39 39 H 1.08993 * 109.75079 * 333.07226 * 10 8 7 40 40 H 1.08994 * 109.46927 * 289.99463 * 12 11 10 41 41 H 1.08993 * 109.47113 * 50.00028 * 12 11 10 42 42 H 1.09006 * 109.47177 * 299.99375 * 13 12 11 43 43 H 1.08992 * 109.47982 * 59.99612 * 13 12 11 44 44 H 0.97000 * 119.99726 * 179.97438 * 17 16 14 45 45 H 1.08999 * 110.29564 * 259.46668 * 22 11 10 46 46 H 1.08994 * 110.69874 * 137.48275 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 4.1577 2.5825 0.0000 6 7 5.6181 2.4668 -0.0012 7 6 6.4444 2.4008 1.2098 8 6 7.8792 2.7307 0.7489 9 9 8.2001 4.0814 0.9216 10 6 8.8817 1.7720 1.4050 11 7 9.0880 0.6353 0.4955 12 6 8.7960 -0.6373 1.1687 13 6 8.7777 -1.7674 0.1374 14 6 8.4776 -3.0728 0.8279 15 1 8.3164 -3.0943 1.8956 16 6 8.4097 -4.2398 0.0968 17 7 8.6065 -4.2136 -1.2033 18 14 8.0384 -5.8581 0.9528 19 1 7.8595 -5.6188 2.4075 20 1 6.7943 -6.4417 0.3900 21 1 9.1667 -6.8000 0.7417 22 6 8.2285 0.8039 -0.7125 23 6 7.8365 2.2931 -0.7437 24 9 8.6684 3.0599 -1.5668 25 6 6.3730 2.4084 -1.1113 26 8 5.9432 2.4426 -2.2450 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.6886 1.8464 0.8901 31 1 1.6886 1.8465 -0.8899 32 1 3.8567 0.6440 -0.8908 33 1 3.8574 0.6436 0.8891 34 1 3.8364 3.1228 0.8905 35 1 3.8358 3.1240 -0.8895 36 1 6.1042 3.1361 1.9391 37 1 6.4069 1.3990 1.6379 38 1 9.8280 2.2863 1.5722 39 1 8.4833 1.4160 2.3550 40 1 9.5650 -0.8386 1.9145 41 1 7.8236 -0.5753 1.6570 42 1 8.0087 -1.5662 -0.6085 43 1 9.7501 -1.8295 -0.3510 44 1 8.5591 -5.0347 -1.7175 45 1 7.3350 0.1852 -0.6302 46 1 8.7795 0.5448 -1.6165 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274040150.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:15 Heat of formation + Delta-G solvation = -180.649263 kcal Electronic energy + Delta-G solvation = -30256.029888 eV Core-core repulsion = 25816.083568 eV Total energy + Delta-G solvation = -4439.946320 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 4.98 seconds Orbital eigenvalues (eV) -49.60626 -48.61696 -42.02398 -39.52692 -38.96052 -37.53187 -35.60248 -34.54323 -32.64391 -31.15130 -30.41070 -28.13694 -27.35408 -26.74671 -25.72115 -24.04019 -22.94599 -22.36099 -21.60451 -21.15573 -18.95399 -18.52992 -18.20546 -17.71344 -17.34497 -17.08979 -16.95494 -16.73319 -16.56956 -16.34491 -16.29302 -15.84125 -15.55083 -15.46008 -15.23339 -15.03875 -14.94104 -14.57767 -14.33882 -14.14152 -13.90850 -13.71364 -13.37416 -13.32186 -13.15966 -13.11022 -12.87620 -12.78345 -12.44063 -12.35799 -12.10580 -12.00816 -11.97892 -11.86445 -11.37305 -11.26027 -11.05106 -10.64401 -10.56959 -10.17400 -9.42970 -8.19454 -6.30521 0.89972 1.34956 1.41775 1.42394 1.54711 2.19503 2.38344 2.46146 2.50971 2.81809 2.89254 2.96893 3.15142 3.16995 3.25421 3.79367 3.82398 4.04028 4.12922 4.18005 4.24326 4.27443 4.36031 4.40668 4.41435 4.45872 4.47732 4.52771 4.55921 4.56807 4.61580 4.80689 4.84217 4.91702 5.02077 5.03052 5.24045 5.43182 5.50783 5.54721 5.73222 5.78291 6.00653 6.22984 6.24232 6.57589 6.87736 7.39590 8.92837 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.007155 B = 0.004742 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3912.588045 B = 5903.089858 C = 8764.862941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.427 6.427 3 C 0.066 3.934 4 C -0.138 4.138 5 C 0.132 3.868 6 N -0.600 5.600 7 C 0.086 3.914 8 C 0.087 3.913 9 F -0.169 7.169 10 C 0.037 3.963 11 N -0.527 5.527 12 C 0.071 3.929 13 C 0.023 3.977 14 C -0.537 4.537 15 H 0.070 0.930 16 C 0.000 4.000 17 N -0.934 5.934 18 Si 0.963 3.037 19 H -0.255 1.255 20 H -0.284 1.284 21 H -0.282 1.282 22 C 0.053 3.947 23 C 0.050 3.950 24 F -0.173 7.173 25 C 0.504 3.496 26 O -0.541 6.541 27 H 0.088 0.912 28 H 0.060 0.940 29 H 0.049 0.951 30 H 0.083 0.917 31 H 0.056 0.944 32 H 0.038 0.962 33 H 0.078 0.922 34 H 0.136 0.864 35 H 0.083 0.917 36 H 0.150 0.850 37 H 0.115 0.885 38 H 0.110 0.890 39 H 0.118 0.882 40 H 0.085 0.915 41 H 0.048 0.952 42 H -0.007 1.007 43 H -0.009 1.009 44 H 0.262 0.738 45 H 0.070 0.930 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.723 16.989 10.835 23.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.346 6.346 3 C -0.010 4.010 4 C -0.177 4.177 5 C 0.012 3.988 6 N -0.333 5.333 7 C -0.036 4.036 8 C 0.066 3.934 9 F -0.149 7.149 10 C -0.091 4.091 11 N -0.252 5.252 12 C -0.056 4.056 13 C -0.014 4.014 14 C -0.575 4.575 15 H 0.088 0.912 16 C -0.198 4.198 17 N -0.574 5.574 18 Si 0.787 3.213 19 H -0.178 1.178 20 H -0.210 1.210 21 H -0.207 1.207 22 C -0.075 4.075 23 C 0.027 3.973 24 F -0.153 7.153 25 C 0.288 3.712 26 O -0.417 6.417 27 H 0.107 0.893 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.101 0.899 31 H 0.075 0.925 32 H 0.057 0.943 33 H 0.097 0.903 34 H 0.154 0.846 35 H 0.101 0.899 36 H 0.168 0.832 37 H 0.133 0.867 38 H 0.128 0.872 39 H 0.136 0.864 40 H 0.104 0.896 41 H 0.066 0.934 42 H 0.012 0.988 43 H 0.010 0.990 44 H 0.070 0.930 45 H 0.089 0.911 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.390 16.791 9.965 23.125 hybrid contribution -0.708 -0.844 -0.658 1.283 sum -13.097 15.947 9.308 22.638 Atomic orbital electron populations 1.22920 0.79246 1.03630 1.01173 1.87883 1.21796 1.29289 1.95679 1.22462 0.92065 0.84524 1.01990 1.21883 0.95034 0.97989 1.02762 1.21582 0.74809 0.96347 1.06040 1.48138 1.07931 1.71240 1.05957 1.23155 0.85425 1.06958 0.88044 1.22942 0.98680 0.79590 0.92139 1.92926 1.94008 1.32358 1.95615 1.23234 0.99343 0.89946 0.96590 1.63856 1.52327 1.03203 1.05811 1.22377 0.99917 0.86666 0.96647 1.19091 0.95165 0.92875 0.94252 1.21633 1.47840 0.93076 0.94974 0.91196 1.25954 0.95123 1.03312 0.95385 1.70125 1.50983 1.28798 1.07542 0.85431 0.77512 0.78942 0.79377 1.17809 1.20979 1.20745 1.23305 0.97634 0.89432 0.97131 1.23004 0.88721 0.94023 0.91557 1.92895 1.72251 1.76400 1.73786 1.20754 0.88632 0.76315 0.85489 1.90732 1.78043 1.50538 1.22424 0.89309 0.92179 0.93241 0.89939 0.92535 0.94349 0.90306 0.84572 0.89865 0.83201 0.86700 0.87228 0.86412 0.89648 0.93380 0.98829 0.99024 0.92969 0.91141 0.89860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.64 16 2 O -0.43 -9.84 10.70 -148.98 -1.59 -11.43 16 3 C 0.07 1.12 5.94 71.98 0.43 1.54 16 4 C -0.14 -2.81 5.91 30.60 0.18 -2.63 16 5 C 0.13 2.16 5.93 86.38 0.51 2.67 16 6 N -0.60 -13.30 2.93 -818.40 -2.40 -15.70 16 7 C 0.09 1.38 6.49 86.76 0.56 1.94 16 8 C 0.09 1.96 1.86 -9.31 -0.02 1.95 16 9 F -0.17 -3.93 17.07 44.97 0.77 -3.17 16 10 C 0.04 0.81 6.17 86.43 0.53 1.35 16 11 N -0.53 -17.02 5.32 -886.52 -4.71 -21.73 16 12 C 0.07 2.54 4.78 86.30 0.41 2.95 16 13 C 0.02 1.18 4.61 29.85 0.14 1.31 16 14 C -0.54 -28.95 9.11 25.60 0.23 -28.72 16 15 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 16 C 0.00 0.01 5.46 84.65 0.46 0.47 16 17 N -0.93 -56.90 13.29 21.45 0.28 -56.62 16 18 Si 0.96 43.34 29.54 68.60 2.03 45.36 16 19 H -0.25 -10.62 7.11 99.48 0.71 -9.91 16 20 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 21 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 22 C 0.05 1.90 4.86 86.20 0.42 2.32 16 23 C 0.05 1.60 1.79 -10.09 -0.02 1.58 16 24 F -0.17 -6.30 17.05 44.97 0.77 -5.53 16 25 C 0.50 16.26 6.85 87.92 0.60 16.86 16 26 O -0.54 -21.69 17.59 -3.06 -0.05 -21.75 16 27 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 29 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 31 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.14 0.95 8.14 -2.38 -0.02 0.94 16 35 H 0.08 1.51 7.92 -2.39 -0.02 1.49 16 36 H 0.15 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.12 1.66 7.61 -2.39 -0.02 1.64 16 38 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.12 1.82 7.00 -2.39 -0.02 1.81 16 40 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 41 H 0.05 1.53 7.95 -2.39 -0.02 1.51 16 42 H -0.01 -0.36 6.27 -2.38 -0.01 -0.37 16 43 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 44 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 45 H 0.07 2.69 6.20 -2.39 -0.01 2.67 16 46 H 0.08 3.39 8.14 -2.39 -0.02 3.37 16 Total: -1.00 -77.38 380.41 1.75 -75.63 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: 0.97 Total: 9.70 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: 5.70 Total: 5.24 kcal Atomic # 7 Polarization: -87.22 SS G_CDS: -6.83 Total: -94.05 kcal Atomic # 8 Polarization: -31.53 SS G_CDS: -1.65 Total: -33.18 kcal Atomic # 9 Polarization: -10.23 SS G_CDS: 1.53 Total: -8.70 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal Total: -77.38 1.75 -75.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040150.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.021 kcal (2) G-P(sol) polarization free energy of solvation -77.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.98 seconds