Wall clock time and date at job start Tue Mar 31 2020 17:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.40177 * 119.82234 * 2 1 4 4 C 1.35689 * 119.27082 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.48356 * 180.02562 * 4 3 2 6 6 N 1.36167 * 119.02876 * 0.02562 * 4 3 2 7 7 N 1.40105 * 133.23062 * 179.97438 * 6 4 3 8 8 C 1.31984 * 106.92795 * 180.02562 * 7 6 4 9 9 C 1.48130 * 125.32536 * 180.02562 * 8 7 6 10 10 O 1.21523 * 119.99862 * 0.02698 * 9 8 7 11 11 N 1.34768 * 120.00237 * 180.02562 * 9 8 7 12 12 C 1.46501 * 120.00367 * 179.97438 * 11 9 8 13 13 H 1.08999 * 109.46972 * 324.99868 * 12 11 9 14 14 C 1.53004 * 109.47130 * 84.99766 * 12 11 9 15 15 C 1.52995 * 109.47559 * 204.99728 * 12 11 9 16 16 N 1.46505 * 109.46747 * 55.00023 * 15 12 11 17 17 C 1.46500 * 119.99894 * 269.99751 * 16 15 12 18 18 C 1.36928 * 120.00123 * 90.00276 * 16 15 12 19 19 H 1.07998 * 119.99966 * 23.62126 * 18 16 15 20 20 C 1.38815 * 120.00117 * 203.62249 * 18 16 15 21 21 N 1.31618 * 119.99946 * 11.30051 * 20 18 16 22 22 Si 1.86796 * 120.00097 * 191.30626 * 20 18 16 23 23 H 1.48503 * 109.47347 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47171 * 119.99834 * 22 20 18 25 25 H 1.48501 * 109.47248 * 239.99747 * 22 20 18 26 26 N 1.33466 * 109.35054 * 0.02562 * 8 7 6 27 27 C 1.32497 * 109.75697 * 359.97438 * 26 8 7 28 28 N 1.31256 * 119.82302 * 179.72894 * 2 1 3 29 29 H 1.09004 * 109.47242 * 89.99360 * 1 2 3 30 30 H 1.08996 * 109.47610 * 209.99998 * 1 2 3 31 31 H 1.09002 * 109.47131 * 329.99858 * 1 2 3 32 32 H 1.07999 * 120.36430 * 359.96192 * 3 2 1 33 33 H 1.09000 * 109.46984 * 90.00359 * 5 4 3 34 34 H 1.09001 * 109.46892 * 210.00293 * 5 4 3 35 35 H 1.09001 * 109.46667 * 330.00032 * 5 4 3 36 36 H 0.97008 * 120.00083 * 359.97438 * 11 9 8 37 37 H 1.09000 * 109.46895 * 300.00197 * 14 12 11 38 38 H 1.08999 * 109.47110 * 60.00187 * 14 12 11 39 39 H 1.09000 * 109.47204 * 180.02562 * 14 12 11 40 40 H 1.09003 * 109.47499 * 174.99803 * 15 12 11 41 41 H 1.09002 * 109.46993 * 295.00294 * 15 12 11 42 42 H 1.09002 * 109.47044 * 94.54846 * 17 16 15 43 43 H 1.08993 * 109.47640 * 214.55052 * 17 16 15 44 44 H 1.09006 * 109.46966 * 334.55367 * 17 16 15 45 45 H 0.96998 * 120.00217 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2041 1.2161 0.0000 4 6 3.5609 1.2031 0.0005 5 6 4.3378 2.4944 0.0011 6 7 4.2101 0.0062 0.0005 7 7 5.5650 -0.3506 0.0005 8 6 5.6151 -1.6695 -0.0001 9 6 6.8553 -2.4796 0.0003 10 8 7.9395 -1.9307 0.0016 11 7 6.7813 -3.8252 -0.0009 12 6 8.0078 -4.6264 -0.0012 13 1 8.7725 -4.1198 -0.5899 14 6 8.5031 -4.8012 1.4359 15 6 7.7202 -5.9993 -0.6120 16 7 7.1340 -5.8281 -1.9437 17 6 5.6805 -5.7276 -2.0968 18 6 7.9446 -5.7622 -3.0453 19 1 8.9314 -6.2002 -3.0165 20 6 7.4981 -5.1324 -4.1989 21 7 6.3986 -4.4095 -4.1706 22 14 8.4577 -5.3110 -5.7916 23 1 9.6476 -6.1685 -5.5592 24 1 7.5915 -5.9347 -6.8241 25 1 8.8971 -3.9712 -6.2577 26 7 4.3735 -2.1592 -0.0010 27 6 3.4993 -1.1635 -0.0005 28 7 2.1597 -1.1387 0.0054 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6671 2.1532 -0.0006 33 1 4.5248 2.8054 1.0289 34 1 5.2879 2.3469 -0.5124 35 1 3.7627 3.2646 -0.5128 36 1 5.9158 -4.2634 -0.0016 37 1 8.7080 -3.8231 1.8710 38 1 7.7383 -5.3078 2.0246 39 1 9.4159 -5.3969 1.4357 40 1 8.6498 -6.5626 -0.6939 41 1 7.0217 -6.5414 0.0255 42 1 5.3884 -4.6775 -2.1107 43 1 5.3799 -6.2007 -3.0316 44 1 5.1916 -6.2296 -1.2618 45 1 6.0867 -3.9692 -4.9766 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275714868.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:35 Heat of formation + Delta-G solvation = 125.012837 kcal Electronic energy + Delta-G solvation = -28845.859103 eV Core-core repulsion = 24902.149224 eV Total energy + Delta-G solvation = -3943.709879 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -42.97231 -39.66393 -38.64218 -36.29950 -35.59690 -34.01539 -32.62026 -31.69378 -31.07453 -30.14332 -29.22340 -28.15042 -26.07991 -25.61056 -25.08179 -23.14269 -22.10582 -21.47917 -20.30728 -19.83909 -18.61053 -18.09523 -16.93541 -16.85986 -16.70178 -15.44734 -15.23656 -14.83277 -14.62997 -14.47133 -14.11113 -13.90955 -13.67922 -13.53817 -13.44880 -13.15422 -12.95949 -12.81459 -12.72547 -12.53836 -12.14081 -12.04121 -11.90821 -11.59812 -11.38116 -11.03528 -10.80439 -10.72481 -10.48450 -10.28141 -10.17681 -10.11266 -9.90636 -9.81865 -9.72971 -9.69133 -8.84593 -8.57519 -8.37781 -6.67214 -5.64793 -3.12124 0.18245 0.50961 1.65754 1.93802 2.96983 3.10243 3.33325 3.42825 3.49767 3.51755 3.72535 3.77300 4.07261 4.36063 4.56258 4.66430 4.80555 4.88483 4.91450 4.99269 5.15294 5.21827 5.32902 5.39769 5.55456 5.56384 5.72011 5.76792 5.87968 5.93255 6.00837 6.04268 6.11478 6.16610 6.28200 6.51886 6.56410 6.78338 6.89821 7.09161 7.29824 7.44108 7.69137 7.82766 7.89250 8.09234 8.46384 8.63249 9.30033 9.92835 10.41404 11.39542 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.012180 B = 0.003524 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.303130 B = 7944.273417 C = 8652.199596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.231 3.769 3 C -0.229 4.229 4 C 0.207 3.793 5 C -0.123 4.123 6 N -0.332 5.332 7 N -0.274 5.274 8 C 0.256 3.744 9 C 0.611 3.389 10 O -0.520 6.520 11 N -0.667 5.667 12 C 0.115 3.885 13 H 0.090 0.910 14 C -0.160 4.160 15 C 0.143 3.857 16 N -0.598 5.598 17 C 0.160 3.840 18 C -0.256 4.256 19 H 0.069 0.931 20 C 0.005 3.995 21 N -0.902 5.902 22 Si 0.902 3.098 23 H -0.278 1.278 24 H -0.290 1.290 25 H -0.292 1.292 26 N -0.492 5.492 27 C 0.450 3.550 28 N -0.455 5.455 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.172 0.828 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.409 0.591 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.044 0.956 42 H 0.035 0.965 43 H 0.042 0.958 44 H -0.003 1.003 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.428 12.746 12.296 21.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.065 3.935 3 C -0.254 4.254 4 C 0.089 3.911 5 C -0.180 4.180 6 N -0.114 5.114 7 N -0.107 5.107 8 C -0.028 4.028 9 C 0.390 3.610 10 O -0.394 6.394 11 N -0.317 5.317 12 C 0.008 3.992 13 H 0.108 0.892 14 C -0.219 4.219 15 C 0.014 3.986 16 N -0.320 5.320 17 C 0.016 3.984 18 C -0.386 4.386 19 H 0.087 0.913 20 C -0.193 4.193 21 N -0.547 5.547 22 Si 0.732 3.268 23 H -0.203 1.203 24 H -0.217 1.217 25 H -0.219 1.219 26 N -0.225 5.225 27 C 0.090 3.910 28 N -0.172 5.172 29 H 0.113 0.887 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.190 0.810 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.116 0.884 36 H 0.245 0.755 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.063 0.937 42 H 0.053 0.947 43 H 0.060 0.940 44 H 0.015 0.985 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -11.256 12.211 12.137 20.570 hybrid contribution 0.148 0.808 -1.144 1.408 sum -11.109 13.019 10.992 20.340 Atomic orbital electron populations 1.20870 0.86228 1.04777 1.04547 1.22033 0.98075 0.86842 0.86597 1.21591 0.91332 1.01356 1.11150 1.20881 0.92063 0.86563 0.91598 1.21077 1.01301 0.90706 1.04904 1.49056 1.07629 1.07898 1.46854 1.78859 0.88667 1.13558 1.29657 1.24432 0.93297 0.89449 0.95652 1.16239 0.84129 0.82496 0.78108 1.90791 1.26747 1.71668 1.50178 1.45579 1.11367 1.03978 1.70747 1.22085 0.86240 0.95420 0.95405 0.89192 1.22168 1.00989 1.01632 0.97146 1.21219 0.98027 0.92094 0.87234 1.43931 1.02445 1.84953 1.00664 1.20867 0.82037 0.99143 0.96368 1.19215 0.98860 1.30116 0.90406 0.91327 1.25041 0.97887 0.97347 0.99066 1.70081 1.23810 1.33693 1.27071 0.86221 0.79317 0.77255 0.83963 1.20283 1.21735 1.21867 1.70879 0.97687 1.26677 1.27278 1.22647 0.90090 0.81679 0.96634 1.67861 1.01752 1.28838 1.18755 0.88686 0.89167 0.89334 0.81026 0.88552 0.88916 0.88416 0.75505 0.92885 0.92894 0.91680 0.91916 0.93732 0.94695 0.93954 0.98495 0.94021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.54 10.19 36.00 0.37 -0.17 16 2 C 0.23 2.24 6.83 -82.11 -0.56 1.68 16 3 C -0.23 -1.76 9.39 -39.77 -0.37 -2.14 16 4 C 0.21 2.25 6.86 -81.58 -0.56 1.69 16 5 C -0.12 -0.90 10.13 36.01 0.36 -0.53 16 6 N -0.33 -5.44 3.91 -10.07 -0.04 -5.48 16 7 N -0.27 -5.42 12.67 32.02 0.41 -5.01 16 8 C 0.26 5.44 7.92 -156.79 -1.24 4.20 16 9 C 0.61 13.68 7.81 -12.20 -0.10 13.59 16 10 O -0.52 -12.72 16.73 5.35 0.09 -12.63 16 11 N -0.67 -13.85 4.41 -54.66 -0.24 -14.10 16 12 C 0.12 2.28 2.88 -67.93 -0.20 2.09 16 13 H 0.09 2.08 7.58 -51.93 -0.39 1.68 16 14 C -0.16 -2.51 9.48 37.16 0.35 -2.16 16 15 C 0.14 2.88 5.33 -4.04 -0.02 2.85 16 16 N -0.60 -15.03 2.78 -181.12 -0.50 -15.53 16 17 C 0.16 4.02 7.61 59.85 0.46 4.48 16 18 C -0.26 -7.16 9.66 -15.06 -0.15 -7.30 16 19 H 0.07 1.87 7.85 -52.49 -0.41 1.46 16 20 C 0.01 0.15 5.13 -17.43 -0.09 0.06 16 21 N -0.90 -27.28 10.66 55.49 0.59 -26.69 16 22 Si 0.90 22.71 29.57 -169.99 -5.03 17.69 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 25 H -0.29 -7.50 7.11 56.52 0.40 -7.09 16 26 N -0.49 -10.11 10.89 -12.23 -0.13 -10.24 16 27 C 0.45 8.10 8.99 -323.04 -2.90 5.20 16 28 N -0.46 -6.79 10.40 -10.01 -0.10 -6.90 16 29 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.09 0.17 8.09 -51.93 -0.42 -0.25 16 32 H 0.17 0.48 8.06 -52.49 -0.42 0.06 16 33 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.10 0.38 8.09 -51.93 -0.42 -0.04 16 36 H 0.41 8.34 6.84 -40.82 -0.28 8.06 16 37 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.06 1.20 8.03 -51.93 -0.42 0.78 16 41 H 0.04 0.80 7.86 -51.93 -0.41 0.39 16 42 H 0.03 0.96 6.90 -51.93 -0.36 0.60 16 43 H 0.04 1.15 7.30 -51.93 -0.38 0.77 16 44 H 0.00 -0.08 7.84 -51.93 -0.41 -0.48 16 45 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 381.26 15.07 5.75 5.75 Total: -1.00 -37.71 381.26 -10.27 -47.99 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -6.41 Total: 1.63 kcal Atomic # 6 Polarization: 28.17 SS G_CDS: -4.65 Total: 23.52 kcal Atomic # 7 Polarization: -83.92 SS G_CDS: -0.02 Total: -83.94 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: 0.09 Total: -12.63 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.03 Total: 17.69 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -37.71 -10.27 -47.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275714868.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.999 kcal (2) G-P(sol) polarization free energy of solvation -37.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds