Wall clock time and date at job start Tue Mar 31 2020 17:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.40177 * 119.82234 * 2 1 4 4 C 1.35689 * 119.27082 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.48356 * 180.02562 * 4 3 2 6 6 N 1.36167 * 119.02876 * 0.02562 * 4 3 2 7 7 N 1.40105 * 133.23062 * 179.97438 * 6 4 3 8 8 C 1.31984 * 106.92795 * 180.02562 * 7 6 4 9 9 C 1.48130 * 125.32536 * 180.02562 * 8 7 6 10 10 O 1.21523 * 119.99862 * 0.02698 * 9 8 7 11 11 N 1.34768 * 120.00237 * 180.02562 * 9 8 7 12 12 C 1.46501 * 120.00367 * 179.97438 * 11 9 8 13 13 H 1.08999 * 109.46972 * 324.99868 * 12 11 9 14 14 C 1.53004 * 109.47130 * 84.99766 * 12 11 9 15 15 C 1.52995 * 109.47559 * 204.99728 * 12 11 9 16 16 N 1.46505 * 109.46747 * 55.00023 * 15 12 11 17 17 C 1.46500 * 119.99894 * 269.99751 * 16 15 12 18 18 C 1.36928 * 120.00123 * 90.00276 * 16 15 12 19 19 H 1.07998 * 119.99966 * 23.62126 * 18 16 15 20 20 C 1.38815 * 120.00117 * 203.62249 * 18 16 15 21 21 N 1.31618 * 119.99946 * 11.30051 * 20 18 16 22 22 Si 1.86796 * 120.00097 * 191.30626 * 20 18 16 23 23 H 1.48503 * 109.47347 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47171 * 119.99834 * 22 20 18 25 25 H 1.48501 * 109.47248 * 239.99747 * 22 20 18 26 26 N 1.33466 * 109.35054 * 0.02562 * 8 7 6 27 27 C 1.32497 * 109.75697 * 359.97438 * 26 8 7 28 28 N 1.31256 * 119.82302 * 179.72894 * 2 1 3 29 29 H 1.09004 * 109.47242 * 89.99360 * 1 2 3 30 30 H 1.08996 * 109.47610 * 209.99998 * 1 2 3 31 31 H 1.09002 * 109.47131 * 329.99858 * 1 2 3 32 32 H 1.07999 * 120.36430 * 359.96192 * 3 2 1 33 33 H 1.09000 * 109.46984 * 90.00359 * 5 4 3 34 34 H 1.09001 * 109.46892 * 210.00293 * 5 4 3 35 35 H 1.09001 * 109.46667 * 330.00032 * 5 4 3 36 36 H 0.97008 * 120.00083 * 359.97438 * 11 9 8 37 37 H 1.09000 * 109.46895 * 300.00197 * 14 12 11 38 38 H 1.08999 * 109.47110 * 60.00187 * 14 12 11 39 39 H 1.09000 * 109.47204 * 180.02562 * 14 12 11 40 40 H 1.09003 * 109.47499 * 174.99803 * 15 12 11 41 41 H 1.09002 * 109.46993 * 295.00294 * 15 12 11 42 42 H 1.09002 * 109.47044 * 94.54846 * 17 16 15 43 43 H 1.08993 * 109.47640 * 214.55052 * 17 16 15 44 44 H 1.09006 * 109.46966 * 334.55367 * 17 16 15 45 45 H 0.96998 * 120.00217 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2041 1.2161 0.0000 4 6 3.5609 1.2031 0.0005 5 6 4.3378 2.4944 0.0011 6 7 4.2101 0.0062 0.0005 7 7 5.5650 -0.3506 0.0005 8 6 5.6151 -1.6695 -0.0001 9 6 6.8553 -2.4796 0.0003 10 8 7.9395 -1.9307 0.0016 11 7 6.7813 -3.8252 -0.0009 12 6 8.0078 -4.6264 -0.0012 13 1 8.7725 -4.1198 -0.5899 14 6 8.5031 -4.8012 1.4359 15 6 7.7202 -5.9993 -0.6120 16 7 7.1340 -5.8281 -1.9437 17 6 5.6805 -5.7276 -2.0968 18 6 7.9446 -5.7622 -3.0453 19 1 8.9314 -6.2002 -3.0165 20 6 7.4981 -5.1324 -4.1989 21 7 6.3986 -4.4095 -4.1706 22 14 8.4577 -5.3110 -5.7916 23 1 9.6476 -6.1685 -5.5592 24 1 7.5915 -5.9347 -6.8241 25 1 8.8971 -3.9712 -6.2577 26 7 4.3735 -2.1592 -0.0010 27 6 3.4993 -1.1635 -0.0005 28 7 2.1597 -1.1387 0.0054 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6671 2.1532 -0.0006 33 1 4.5248 2.8054 1.0289 34 1 5.2879 2.3469 -0.5124 35 1 3.7627 3.2646 -0.5128 36 1 5.9158 -4.2634 -0.0016 37 1 8.7080 -3.8231 1.8710 38 1 7.7383 -5.3078 2.0246 39 1 9.4159 -5.3969 1.4357 40 1 8.6498 -6.5626 -0.6939 41 1 7.0217 -6.5414 0.0255 42 1 5.3884 -4.6775 -2.1107 43 1 5.3799 -6.2007 -3.0316 44 1 5.1916 -6.2296 -1.2618 45 1 6.0867 -3.9692 -4.9766 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275714868.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:33 Heat of formation + Delta-G solvation = 99.500608 kcal Electronic energy + Delta-G solvation = -28846.965396 eV Core-core repulsion = 24902.149224 eV Total energy + Delta-G solvation = -3944.816172 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.16154 -41.10474 -39.92883 -38.11774 -36.55690 -35.88881 -33.70598 -33.17768 -32.62590 -31.79443 -30.18008 -28.78675 -28.00811 -27.44296 -26.48875 -24.26751 -23.56533 -22.81368 -21.91562 -21.45525 -19.71549 -19.26162 -18.76288 -18.35417 -18.06216 -17.17859 -16.78372 -16.21848 -16.01220 -15.53831 -15.42870 -15.29209 -15.07073 -14.79908 -14.60765 -14.51812 -14.20249 -13.83948 -13.80264 -13.52936 -13.44833 -13.11980 -13.05144 -12.89007 -12.86837 -12.73765 -12.64286 -12.53807 -12.33376 -12.04909 -11.85550 -11.79076 -11.63861 -11.47863 -11.12338 -10.78484 -10.67567 -10.12909 -9.96478 -8.75817 -7.82705 -5.31207 -0.77590 -0.56006 0.55138 0.58994 1.41204 1.42587 1.52710 1.66396 1.94391 2.13091 2.27401 2.49227 2.86498 3.11669 3.23819 3.31918 3.68006 3.73515 3.99141 4.12783 4.18823 4.27326 4.38087 4.44497 4.47166 4.50322 4.67982 4.76402 4.80142 4.80874 4.81270 4.86410 4.87922 4.98683 5.06724 5.12258 5.21061 5.32067 5.33242 5.35274 5.49281 5.64212 5.77599 6.15299 6.31787 6.34660 6.60022 6.96361 7.14850 7.87147 8.29789 9.19729 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.012180 B = 0.003524 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.303130 B = 7944.273417 C = 8652.199596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.234 3.766 3 C -0.190 4.190 4 C 0.171 3.829 5 C -0.118 4.118 6 N -0.335 5.335 7 N -0.299 5.299 8 C 0.231 3.769 9 C 0.605 3.395 10 O -0.555 6.555 11 N -0.661 5.661 12 C 0.118 3.882 13 H 0.050 0.950 14 C -0.146 4.146 15 C 0.141 3.859 16 N -0.612 5.612 17 C 0.178 3.822 18 C -0.257 4.257 19 H 0.075 0.925 20 C -0.054 4.054 21 N -0.935 5.935 22 Si 0.963 3.037 23 H -0.261 1.261 24 H -0.290 1.290 25 H -0.302 1.302 26 N -0.528 5.528 27 C 0.434 3.566 28 N -0.493 5.493 29 H 0.111 0.889 30 H 0.083 0.917 31 H 0.134 0.866 32 H 0.239 0.761 33 H 0.112 0.888 34 H 0.061 0.939 35 H 0.143 0.857 36 H 0.410 0.590 37 H 0.040 0.960 38 H 0.075 0.925 39 H 0.090 0.910 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.003 0.997 43 H 0.012 0.988 44 H 0.032 0.968 45 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.641 14.152 13.447 24.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.071 3.929 3 C -0.213 4.213 4 C 0.056 3.944 5 C -0.174 4.174 6 N -0.117 5.117 7 N -0.134 5.134 8 C -0.053 4.053 9 C 0.386 3.614 10 O -0.432 6.432 11 N -0.310 5.310 12 C 0.011 3.989 13 H 0.068 0.932 14 C -0.205 4.205 15 C 0.015 3.985 16 N -0.334 5.334 17 C 0.033 3.967 18 C -0.388 4.388 19 H 0.093 0.907 20 C -0.249 4.249 21 N -0.582 5.582 22 Si 0.792 3.208 23 H -0.185 1.185 24 H -0.217 1.217 25 H -0.230 1.230 26 N -0.264 5.264 27 C 0.074 3.926 28 N -0.213 5.213 29 H 0.129 0.871 30 H 0.102 0.898 31 H 0.152 0.848 32 H 0.255 0.745 33 H 0.130 0.870 34 H 0.080 0.920 35 H 0.161 0.839 36 H 0.246 0.754 37 H 0.060 0.940 38 H 0.094 0.906 39 H 0.108 0.892 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.022 0.978 43 H 0.031 0.969 44 H 0.051 0.949 45 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -13.503 13.625 13.324 23.357 hybrid contribution 0.572 0.520 -1.432 1.627 sum -12.931 14.146 11.893 22.555 Atomic orbital electron populations 1.21155 0.82318 1.06731 1.05988 1.23148 1.00317 0.86321 0.83081 1.22408 0.89797 1.03083 1.06053 1.21976 0.93674 0.86076 0.92670 1.21228 1.00181 0.89923 1.06104 1.49103 1.06173 1.09463 1.46941 1.78630 0.91382 1.12982 1.30422 1.24057 0.93254 0.89986 0.98025 1.16499 0.84389 0.82980 0.77547 1.90735 1.28083 1.72346 1.52054 1.45629 1.11723 1.03720 1.69957 1.22033 0.84961 0.94261 0.97626 0.93206 1.22049 1.02657 1.01782 0.94026 1.21450 0.99332 0.92459 0.85291 1.44138 1.02307 1.84807 1.02150 1.20552 0.82638 0.97270 0.96221 1.19597 0.99099 1.28744 0.91337 0.90679 1.25798 0.99069 0.97816 1.02230 1.70284 1.25615 1.35229 1.27089 0.85250 0.78565 0.76680 0.80276 1.18470 1.21705 1.22977 1.70679 0.97829 1.28697 1.29187 1.22832 0.91120 0.81800 0.96880 1.68021 1.00054 1.31683 1.21531 0.87056 0.89827 0.84776 0.74511 0.86981 0.91973 0.83858 0.75356 0.94034 0.90574 0.89158 0.90307 0.90542 0.97834 0.96918 0.94920 0.95028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.58 10.19 71.23 0.73 0.15 16 2 C 0.23 3.83 6.83 43.11 0.29 4.12 16 3 C -0.19 -2.07 9.39 22.15 0.21 -1.87 16 4 C 0.17 3.41 6.86 41.30 0.28 3.69 16 5 C -0.12 -1.44 10.13 71.24 0.72 -0.72 16 6 N -0.33 -11.28 3.91 -185.76 -0.73 -12.01 16 7 N -0.30 -12.67 12.67 -52.60 -0.67 -13.34 16 8 C 0.23 10.60 7.92 137.40 1.09 11.69 16 9 C 0.61 29.16 7.81 86.87 0.68 29.84 16 10 O -0.56 -29.24 16.73 -3.79 -0.06 -29.30 16 11 N -0.66 -28.83 4.41 -445.14 -1.96 -30.79 16 12 C 0.12 4.72 2.88 44.99 0.13 4.85 16 13 H 0.05 2.41 7.58 -2.39 -0.02 2.39 16 14 C -0.15 -4.45 9.48 71.98 0.68 -3.77 16 15 C 0.14 5.57 5.33 86.38 0.46 6.03 16 16 N -0.61 -31.07 2.78 -726.93 -2.02 -33.09 16 17 C 0.18 9.17 7.61 127.77 0.97 10.14 16 18 C -0.26 -14.56 9.66 84.04 0.81 -13.75 16 19 H 0.08 4.08 7.85 -2.91 -0.02 4.06 16 20 C -0.05 -3.21 5.13 84.86 0.44 -2.77 16 21 N -0.94 -59.13 10.66 21.65 0.23 -58.90 16 22 Si 0.96 47.89 29.57 68.60 2.03 49.91 16 23 H -0.26 -12.08 7.11 99.48 0.71 -11.37 16 24 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 25 H -0.30 -15.41 7.11 99.48 0.71 -14.70 16 26 N -0.53 -23.29 10.89 -192.62 -2.10 -25.39 16 27 C 0.43 16.27 8.99 261.57 2.35 18.62 16 28 N -0.49 -14.64 10.40 -185.60 -1.93 -16.57 16 29 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.13 -0.40 8.09 -2.39 -0.02 -0.42 16 32 H 0.24 -0.60 8.06 -2.91 -0.02 -0.62 16 33 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.14 0.40 8.09 -2.39 -0.02 0.38 16 36 H 0.41 17.52 6.84 -92.70 -0.63 16.88 16 37 H 0.04 1.36 8.14 -2.39 -0.02 1.35 16 38 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.08 2.87 8.03 -2.39 -0.02 2.85 16 41 H 0.08 2.55 7.86 -2.39 -0.02 2.53 16 42 H 0.00 0.20 6.90 -2.39 -0.02 0.18 16 43 H 0.01 0.69 7.30 -2.39 -0.02 0.67 16 44 H 0.03 1.41 7.84 -2.38 -0.02 1.39 16 45 H 0.24 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -92.58 381.26 3.02 -89.56 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: 0.39 Total: 13.66 kcal Atomic # 6 Polarization: 56.42 SS G_CDS: 9.84 Total: 66.26 kcal Atomic # 7 Polarization: -180.92 SS G_CDS: -9.17 Total: -190.09 kcal Atomic # 8 Polarization: -29.24 SS G_CDS: -0.06 Total: -29.30 kcal Atomic # 14 Polarization: 47.89 SS G_CDS: 2.03 Total: 49.91 kcal Total: -92.58 3.02 -89.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275714868.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.058 kcal (2) G-P(sol) polarization free energy of solvation -92.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds