Wall clock time and date at job start Tue Mar 31 2020 17:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.40173 * 119.82147 * 2 1 4 4 C 1.35677 * 119.27576 * 180.02562 * 3 2 1 5 5 C 1.50702 * 120.48844 * 180.02562 * 4 3 2 6 6 N 1.36168 * 119.02662 * 359.97438 * 4 3 2 7 7 N 1.40111 * 133.22883 * 180.02562 * 6 4 3 8 8 C 1.31988 * 106.92546 * 179.97438 * 7 6 4 9 9 C 1.48121 * 125.32501 * 180.02562 * 8 7 6 10 10 O 1.21530 * 119.99973 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00411 * 180.02562 * 9 8 7 12 12 C 1.46494 * 120.00041 * 179.97438 * 11 9 8 13 13 H 1.08999 * 109.47609 * 35.00488 * 12 11 9 14 14 C 1.52995 * 109.47837 * 275.00000 * 12 11 9 15 15 C 1.53004 * 109.47050 * 154.99902 * 12 11 9 16 16 N 1.46499 * 109.47043 * 305.00512 * 15 12 11 17 17 C 1.46498 * 120.00111 * 269.99317 * 16 15 12 18 18 C 1.36942 * 120.00039 * 90.00005 * 16 15 12 19 19 H 1.07998 * 120.00391 * 22.33781 * 18 16 15 20 20 C 1.38814 * 119.99713 * 202.34316 * 18 16 15 21 21 N 1.31614 * 120.00269 * 11.34981 * 20 18 16 22 22 Si 1.86797 * 119.99997 * 191.35299 * 20 18 16 23 23 H 1.48496 * 109.47524 * 89.99573 * 22 20 18 24 24 H 1.48497 * 109.47282 * 210.00139 * 22 20 18 25 25 H 1.48507 * 109.47117 * 329.99905 * 22 20 18 26 26 N 1.33473 * 109.35328 * 359.97438 * 8 7 6 27 27 C 1.32497 * 109.75368 * 0.02562 * 26 8 7 28 28 N 1.31255 * 119.82201 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.47238 * 270.02960 * 1 2 3 30 30 H 1.09001 * 109.47224 * 30.02423 * 1 2 3 31 31 H 1.09003 * 109.47077 * 150.02570 * 1 2 3 32 32 H 1.08005 * 120.36600 * 359.97224 * 3 2 1 33 33 H 1.09004 * 109.46977 * 90.00118 * 5 4 3 34 34 H 1.09000 * 109.47076 * 209.99516 * 5 4 3 35 35 H 1.08996 * 109.46796 * 329.99800 * 5 4 3 36 36 H 0.97004 * 119.99484 * 359.97438 * 11 9 8 37 37 H 1.08996 * 109.47946 * 180.02562 * 14 12 11 38 38 H 1.08999 * 109.46920 * 300.00910 * 14 12 11 39 39 H 1.09006 * 109.47037 * 59.99896 * 14 12 11 40 40 H 1.09004 * 109.46543 * 65.00047 * 15 12 11 41 41 H 1.08993 * 109.47488 * 185.00276 * 15 12 11 42 42 H 1.09000 * 109.46899 * 94.22655 * 17 16 15 43 43 H 1.09000 * 109.47536 * 214.22907 * 17 16 15 44 44 H 1.09003 * 109.47190 * 334.23015 * 17 16 15 45 45 H 0.97003 * 120.00296 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2041 1.2161 0.0000 4 6 3.5608 1.2032 -0.0005 5 6 4.3377 2.4945 0.0000 6 7 4.2101 0.0063 -0.0005 7 7 5.5651 -0.3504 -0.0005 8 6 5.6152 -1.6693 0.0001 9 6 6.8554 -2.4792 0.0008 10 8 7.9396 -1.9303 0.0014 11 7 6.7815 -3.8250 0.0009 12 6 8.0081 -4.6259 0.0010 13 1 8.7725 -4.1198 0.5906 14 6 8.5041 -4.7996 -1.4358 15 6 7.7202 -5.9994 0.6107 16 7 7.1333 -5.8293 1.9422 17 6 7.9999 -5.7597 3.1213 18 6 5.7745 -5.7356 2.0846 19 1 5.1227 -6.1334 1.3209 20 6 5.2349 -5.1291 3.2106 21 7 6.0113 -4.4500 4.0282 22 14 3.4070 -5.2768 3.5656 23 1 3.1604 -6.4798 4.4005 24 1 2.9444 -4.0669 4.2919 25 1 2.6627 -5.4010 2.2865 26 7 4.3736 -2.1591 0.0010 27 6 3.4994 -1.1635 0.0005 28 7 2.1597 -1.1387 0.0005 29 1 -0.3633 0.0005 1.0276 30 1 -0.3634 0.8898 -0.5142 31 1 -0.3633 -0.8902 -0.5134 32 1 1.6671 2.1532 -0.0005 33 1 4.5254 2.8051 1.0279 34 1 5.2874 2.3473 -0.5142 35 1 3.7622 3.2649 -0.5131 36 1 5.9160 -4.2631 0.0008 37 1 9.4165 -5.3959 -1.4357 38 1 7.7397 -5.3057 -2.0254 39 1 8.7092 -3.8211 -1.8702 40 1 7.0221 -6.5411 -0.0276 41 1 8.6497 -6.5626 0.6926 42 1 8.2133 -4.7165 3.3542 43 1 7.4980 -6.2260 3.9691 44 1 8.9331 -6.2848 2.9178 45 1 5.6343 -4.0265 4.8153 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275714869.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:40 Heat of formation + Delta-G solvation = 125.095036 kcal Electronic energy + Delta-G solvation = -29197.986316 eV Core-core repulsion = 25254.280002 eV Total energy + Delta-G solvation = -3943.706315 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.88387 -39.57177 -38.55732 -36.26282 -35.52363 -33.97424 -32.54355 -31.64180 -31.09061 -30.00025 -29.14913 -28.08880 -26.12978 -25.53589 -25.03483 -23.06079 -22.04475 -21.49078 -20.27771 -19.66344 -18.55127 -18.00708 -17.02199 -16.77460 -16.43749 -15.48018 -15.16379 -14.81014 -14.57395 -14.40354 -14.04349 -13.83926 -13.62891 -13.54044 -13.39691 -13.02898 -12.90712 -12.79691 -12.64098 -12.48407 -12.19275 -11.99751 -11.84632 -11.52452 -11.34503 -11.22206 -10.77109 -10.59563 -10.37690 -10.22436 -10.14752 -10.08334 -9.95188 -9.74389 -9.67357 -9.61113 -8.75959 -8.47577 -8.33777 -6.70851 -5.65630 -3.11486 0.25939 0.58414 1.73813 2.02802 3.06575 3.18372 3.41870 3.45884 3.52135 3.56257 3.80228 3.85556 4.15627 4.43534 4.58269 4.74064 4.87301 4.93079 4.99277 5.04907 5.21151 5.27733 5.38590 5.41406 5.57590 5.61016 5.69382 5.83340 5.89325 6.01214 6.02209 6.10951 6.18763 6.21467 6.27791 6.48337 6.53642 6.79473 6.90647 7.16456 7.38416 7.45216 7.79426 7.81250 7.88049 8.25047 8.44820 8.75871 9.29505 9.92894 10.41203 11.38696 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.011172 B = 0.004601 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.725297 B = 6083.828502 C = 7642.836090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.229 3.771 3 C -0.230 4.230 4 C 0.205 3.795 5 C -0.122 4.122 6 N -0.333 5.333 7 N -0.277 5.277 8 C 0.257 3.743 9 C 0.609 3.391 10 O -0.531 6.531 11 N -0.655 5.655 12 C 0.117 3.883 13 H 0.081 0.919 14 C -0.161 4.161 15 C 0.142 3.858 16 N -0.599 5.599 17 C 0.164 3.836 18 C -0.255 4.255 19 H 0.069 0.931 20 C 0.012 3.988 21 N -0.902 5.902 22 Si 0.897 3.103 23 H -0.290 1.290 24 H -0.296 1.296 25 H -0.273 1.273 26 N -0.484 5.484 27 C 0.448 3.552 28 N -0.455 5.455 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.172 0.828 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.417 0.583 37 H 0.063 0.937 38 H 0.054 0.946 39 H 0.052 0.948 40 H 0.051 0.949 41 H 0.056 0.944 42 H 0.027 0.973 43 H 0.045 0.955 44 H -0.004 1.004 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.235 12.524 -10.506 18.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.062 3.938 3 C -0.255 4.255 4 C 0.088 3.912 5 C -0.179 4.179 6 N -0.115 5.115 7 N -0.110 5.110 8 C -0.027 4.027 9 C 0.388 3.612 10 O -0.406 6.406 11 N -0.305 5.305 12 C 0.009 3.991 13 H 0.099 0.901 14 C -0.220 4.220 15 C 0.013 3.987 16 N -0.321 5.321 17 C 0.019 3.981 18 C -0.384 4.384 19 H 0.087 0.913 20 C -0.187 4.187 21 N -0.546 5.546 22 Si 0.727 3.273 23 H -0.217 1.217 24 H -0.222 1.222 25 H -0.198 1.198 26 N -0.217 5.217 27 C 0.087 3.913 28 N -0.171 5.171 29 H 0.112 0.888 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.189 0.811 33 H 0.115 0.885 34 H 0.110 0.890 35 H 0.115 0.885 36 H 0.255 0.745 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.045 0.955 43 H 0.063 0.937 44 H 0.015 0.985 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -7.024 11.976 -10.317 17.298 hybrid contribution -1.336 0.816 0.559 1.662 sum -8.360 12.792 -9.758 18.132 Atomic orbital electron populations 1.20866 0.86312 1.04742 1.04497 1.22023 0.98059 0.86858 0.86834 1.21569 0.91364 1.01282 1.11268 1.20865 0.92056 0.86577 0.91742 1.21064 1.01095 0.90680 1.05041 1.49084 1.07656 1.07848 1.46881 1.78837 0.88627 1.13600 1.29965 1.24431 0.93362 0.89335 0.95523 1.16267 0.84040 0.82620 0.78230 1.90769 1.26764 1.71858 1.51166 1.45544 1.11708 1.03694 1.69569 1.22047 0.86302 0.95309 0.95432 0.90087 1.22170 1.00921 1.01635 0.97250 1.21216 0.97354 0.92158 0.87948 1.43932 1.03404 1.84958 0.99793 1.20801 0.89595 0.98632 0.89030 1.19093 0.81669 1.31794 1.05862 0.91329 1.24947 0.97281 0.97449 0.99069 1.70081 1.33808 1.35609 1.15130 0.86345 0.85926 0.76668 0.78378 1.21703 1.22230 1.19759 1.70954 0.97707 1.26438 1.26640 1.22690 0.90107 0.81685 0.96793 1.67862 1.01880 1.28842 1.18526 0.88777 0.89339 0.89183 0.81087 0.88498 0.89029 0.88518 0.74462 0.91843 0.92716 0.92855 0.93047 0.92570 0.95461 0.93658 0.98545 0.94012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.19 36.00 0.37 -0.31 16 2 C 0.23 2.53 6.83 -82.11 -0.56 1.97 16 3 C -0.23 -2.01 9.39 -39.77 -0.37 -2.38 16 4 C 0.21 2.42 6.86 -81.58 -0.56 1.86 16 5 C -0.12 -0.96 10.13 36.01 0.36 -0.60 16 6 N -0.33 -5.79 3.91 -10.07 -0.04 -5.83 16 7 N -0.28 -5.70 12.67 32.02 0.41 -5.29 16 8 C 0.26 5.75 7.92 -156.79 -1.24 4.51 16 9 C 0.61 14.04 7.81 -12.20 -0.10 13.95 16 10 O -0.53 -13.03 16.73 5.34 0.09 -12.94 16 11 N -0.66 -14.20 4.48 -54.67 -0.25 -14.45 16 12 C 0.12 2.29 2.88 -67.93 -0.20 2.09 16 13 H 0.08 1.78 7.58 -51.93 -0.39 1.38 16 14 C -0.16 -2.52 9.48 37.15 0.35 -2.16 16 15 C 0.14 2.82 5.36 -4.04 -0.02 2.80 16 16 N -0.60 -14.84 2.82 -181.12 -0.51 -15.35 16 17 C 0.16 4.12 9.01 59.85 0.54 4.66 16 18 C -0.25 -6.88 8.02 -15.06 -0.12 -7.00 16 19 H 0.07 1.82 7.84 -52.49 -0.41 1.40 16 20 C 0.01 0.33 5.13 -17.43 -0.09 0.24 16 21 N -0.90 -27.04 10.58 55.49 0.59 -26.45 16 22 Si 0.90 23.03 29.57 -169.99 -5.03 18.00 16 23 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 24 H -0.30 -7.84 7.11 56.52 0.40 -7.43 16 25 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 26 N -0.48 -10.81 10.89 -12.23 -0.13 -10.94 16 27 C 0.45 8.77 8.99 -323.03 -2.90 5.86 16 28 N -0.45 -7.57 10.40 -10.01 -0.10 -7.68 16 29 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.09 0.26 8.09 -51.93 -0.42 -0.16 16 31 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.17 0.63 8.06 -52.48 -0.42 0.21 16 33 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.10 0.39 8.09 -51.93 -0.42 -0.03 16 36 H 0.42 9.35 7.07 -40.82 -0.29 9.06 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.05 0.97 8.03 -51.93 -0.42 0.55 16 41 H 0.06 1.00 7.86 -51.93 -0.41 0.59 16 42 H 0.03 0.76 7.42 -51.93 -0.39 0.37 16 43 H 0.04 1.22 7.19 -51.93 -0.37 0.84 16 44 H 0.00 -0.09 7.84 -51.93 -0.41 -0.49 16 45 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 381.73 15.07 5.75 5.75 Total: -1.00 -37.27 381.73 -10.20 -47.47 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -6.44 Total: 2.21 kcal Atomic # 6 Polarization: 30.03 SS G_CDS: -4.54 Total: 25.49 kcal Atomic # 7 Polarization: -85.95 SS G_CDS: -0.04 Total: -85.99 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.09 Total: -12.94 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -5.03 Total: 18.00 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -37.27 -10.20 -47.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275714869.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.569 kcal (2) G-P(sol) polarization free energy of solvation -37.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds