Wall clock time and date at job start Tue Mar 31 2020 17:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.40173 * 119.82147 * 2 1 4 4 C 1.35677 * 119.27576 * 180.02562 * 3 2 1 5 5 C 1.50702 * 120.48844 * 180.02562 * 4 3 2 6 6 N 1.36168 * 119.02662 * 359.97438 * 4 3 2 7 7 N 1.40111 * 133.22883 * 180.02562 * 6 4 3 8 8 C 1.31988 * 106.92546 * 179.97438 * 7 6 4 9 9 C 1.48121 * 125.32501 * 180.02562 * 8 7 6 10 10 O 1.21530 * 119.99973 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00411 * 180.02562 * 9 8 7 12 12 C 1.46494 * 120.00041 * 179.97438 * 11 9 8 13 13 H 1.08999 * 109.47609 * 35.00488 * 12 11 9 14 14 C 1.52995 * 109.47837 * 275.00000 * 12 11 9 15 15 C 1.53004 * 109.47050 * 154.99902 * 12 11 9 16 16 N 1.46499 * 109.47043 * 305.00512 * 15 12 11 17 17 C 1.46498 * 120.00111 * 269.99317 * 16 15 12 18 18 C 1.36942 * 120.00039 * 90.00005 * 16 15 12 19 19 H 1.07998 * 120.00391 * 22.33781 * 18 16 15 20 20 C 1.38814 * 119.99713 * 202.34316 * 18 16 15 21 21 N 1.31614 * 120.00269 * 11.34981 * 20 18 16 22 22 Si 1.86797 * 119.99997 * 191.35299 * 20 18 16 23 23 H 1.48496 * 109.47524 * 89.99573 * 22 20 18 24 24 H 1.48497 * 109.47282 * 210.00139 * 22 20 18 25 25 H 1.48507 * 109.47117 * 329.99905 * 22 20 18 26 26 N 1.33473 * 109.35328 * 359.97438 * 8 7 6 27 27 C 1.32497 * 109.75368 * 0.02562 * 26 8 7 28 28 N 1.31255 * 119.82201 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.47238 * 270.02960 * 1 2 3 30 30 H 1.09001 * 109.47224 * 30.02423 * 1 2 3 31 31 H 1.09003 * 109.47077 * 150.02570 * 1 2 3 32 32 H 1.08005 * 120.36600 * 359.97224 * 3 2 1 33 33 H 1.09004 * 109.46977 * 90.00118 * 5 4 3 34 34 H 1.09000 * 109.47076 * 209.99516 * 5 4 3 35 35 H 1.08996 * 109.46796 * 329.99800 * 5 4 3 36 36 H 0.97004 * 119.99484 * 359.97438 * 11 9 8 37 37 H 1.08996 * 109.47946 * 180.02562 * 14 12 11 38 38 H 1.08999 * 109.46920 * 300.00910 * 14 12 11 39 39 H 1.09006 * 109.47037 * 59.99896 * 14 12 11 40 40 H 1.09004 * 109.46543 * 65.00047 * 15 12 11 41 41 H 1.08993 * 109.47488 * 185.00276 * 15 12 11 42 42 H 1.09000 * 109.46899 * 94.22655 * 17 16 15 43 43 H 1.09000 * 109.47536 * 214.22907 * 17 16 15 44 44 H 1.09003 * 109.47190 * 334.23015 * 17 16 15 45 45 H 0.97003 * 120.00296 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2041 1.2161 0.0000 4 6 3.5608 1.2032 -0.0005 5 6 4.3377 2.4945 0.0000 6 7 4.2101 0.0063 -0.0005 7 7 5.5651 -0.3504 -0.0005 8 6 5.6152 -1.6693 0.0001 9 6 6.8554 -2.4792 0.0008 10 8 7.9396 -1.9303 0.0014 11 7 6.7815 -3.8250 0.0009 12 6 8.0081 -4.6259 0.0010 13 1 8.7725 -4.1198 0.5906 14 6 8.5041 -4.7996 -1.4358 15 6 7.7202 -5.9994 0.6107 16 7 7.1333 -5.8293 1.9422 17 6 7.9999 -5.7597 3.1213 18 6 5.7745 -5.7356 2.0846 19 1 5.1227 -6.1334 1.3209 20 6 5.2349 -5.1291 3.2106 21 7 6.0113 -4.4500 4.0282 22 14 3.4070 -5.2768 3.5656 23 1 3.1604 -6.4798 4.4005 24 1 2.9444 -4.0669 4.2919 25 1 2.6627 -5.4010 2.2865 26 7 4.3736 -2.1591 0.0010 27 6 3.4994 -1.1635 0.0005 28 7 2.1597 -1.1387 0.0005 29 1 -0.3633 0.0005 1.0276 30 1 -0.3634 0.8898 -0.5142 31 1 -0.3633 -0.8902 -0.5134 32 1 1.6671 2.1532 -0.0005 33 1 4.5254 2.8051 1.0279 34 1 5.2874 2.3473 -0.5142 35 1 3.7622 3.2649 -0.5131 36 1 5.9160 -4.2631 0.0008 37 1 9.4165 -5.3959 -1.4357 38 1 7.7397 -5.3057 -2.0254 39 1 8.7092 -3.8211 -1.8702 40 1 7.0221 -6.5411 -0.0276 41 1 8.6497 -6.5626 0.6926 42 1 8.2133 -4.7165 3.3542 43 1 7.4980 -6.2260 3.9691 44 1 8.9331 -6.2848 2.9178 45 1 5.6343 -4.0265 4.8153 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275714869.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:39 Heat of formation + Delta-G solvation = 99.901108 kcal Electronic energy + Delta-G solvation = -29199.078807 eV Core-core repulsion = 25254.280002 eV Total energy + Delta-G solvation = -3944.798805 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.15779 -41.05697 -39.92000 -38.08748 -36.56703 -35.84334 -33.71303 -33.21736 -32.61859 -31.65985 -30.18978 -28.79680 -28.04744 -27.39548 -26.46323 -24.26581 -23.57670 -22.84077 -21.88380 -21.33360 -19.74644 -19.23587 -18.80416 -18.20194 -18.06041 -17.16173 -16.82337 -16.16261 -16.02695 -15.61623 -15.33161 -15.28664 -15.03408 -14.78414 -14.56712 -14.52311 -14.21379 -13.93066 -13.84405 -13.45666 -13.44888 -13.12278 -13.07634 -12.90893 -12.89322 -12.77708 -12.64820 -12.57387 -12.16837 -12.02481 -12.00094 -11.73987 -11.62515 -11.43169 -11.12975 -10.78438 -10.62820 -10.04666 -9.96962 -8.78448 -7.82564 -5.27498 -0.77838 -0.57315 0.55817 0.60720 1.37885 1.41543 1.49002 1.70141 1.95724 2.15027 2.28391 2.49361 2.87701 3.10616 3.26399 3.35694 3.68973 3.75006 3.98131 4.11498 4.17918 4.26321 4.40196 4.45589 4.48536 4.49719 4.67872 4.75915 4.76531 4.80026 4.83081 4.85129 4.89592 4.98702 5.06031 5.13677 5.20203 5.29764 5.34597 5.37392 5.52744 5.65074 5.75335 6.17802 6.31856 6.39162 6.63304 7.02202 7.16413 7.88668 8.31454 9.20683 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.011172 B = 0.004601 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.725297 B = 6083.828502 C = 7642.836090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.231 3.769 3 C -0.191 4.191 4 C 0.172 3.828 5 C -0.117 4.117 6 N -0.334 5.334 7 N -0.298 5.298 8 C 0.232 3.768 9 C 0.604 3.396 10 O -0.559 6.559 11 N -0.653 5.653 12 C 0.116 3.884 13 H 0.053 0.947 14 C -0.147 4.147 15 C 0.141 3.859 16 N -0.612 5.612 17 C 0.178 3.822 18 C -0.238 4.238 19 H 0.076 0.924 20 C -0.043 4.043 21 N -0.935 5.935 22 Si 0.946 3.054 23 H -0.281 1.281 24 H -0.312 1.312 25 H -0.268 1.268 26 N -0.529 5.529 27 C 0.430 3.570 28 N -0.498 5.498 29 H 0.109 0.891 30 H 0.136 0.864 31 H 0.081 0.919 32 H 0.240 0.760 33 H 0.104 0.896 34 H 0.067 0.933 35 H 0.147 0.853 36 H 0.413 0.587 37 H 0.094 0.906 38 H 0.070 0.930 39 H 0.040 0.960 40 H 0.069 0.931 41 H 0.088 0.912 42 H -0.010 1.010 43 H 0.019 0.981 44 H 0.035 0.965 45 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.743 14.028 -12.136 21.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.069 3.931 3 C -0.214 4.214 4 C 0.056 3.944 5 C -0.173 4.173 6 N -0.116 5.116 7 N -0.133 5.133 8 C -0.052 4.052 9 C 0.384 3.616 10 O -0.437 6.437 11 N -0.302 5.302 12 C 0.010 3.990 13 H 0.071 0.929 14 C -0.206 4.206 15 C 0.014 3.986 16 N -0.335 5.335 17 C 0.033 3.967 18 C -0.368 4.368 19 H 0.093 0.907 20 C -0.238 4.238 21 N -0.582 5.582 22 Si 0.777 3.223 23 H -0.208 1.208 24 H -0.240 1.240 25 H -0.192 1.192 26 N -0.264 5.264 27 C 0.070 3.930 28 N -0.218 5.218 29 H 0.127 0.873 30 H 0.155 0.845 31 H 0.100 0.900 32 H 0.256 0.744 33 H 0.122 0.878 34 H 0.086 0.914 35 H 0.165 0.835 36 H 0.250 0.750 37 H 0.112 0.888 38 H 0.089 0.911 39 H 0.060 0.940 40 H 0.087 0.913 41 H 0.106 0.894 42 H 0.008 0.992 43 H 0.038 0.962 44 H 0.053 0.947 45 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -9.575 13.492 -11.990 20.433 hybrid contribution -0.768 0.508 0.987 1.350 sum -10.344 14.000 -11.004 20.593 Atomic orbital electron populations 1.21157 0.82429 1.06759 1.05885 1.23151 1.00318 0.86390 0.83269 1.22398 0.89904 1.02940 1.06206 1.22004 0.93662 0.86139 0.92550 1.21231 1.00426 0.89819 1.05844 1.49127 1.06241 1.09352 1.46886 1.78610 0.91175 1.12909 1.30592 1.24146 0.93309 0.89959 0.97776 1.16489 0.84266 0.83058 0.77804 1.90716 1.27825 1.72397 1.52737 1.45649 1.12083 1.03542 1.68947 1.22079 0.84939 0.94257 0.97773 0.92881 1.22053 1.02618 1.01776 0.94131 1.21464 0.99006 0.92495 0.85642 1.44165 1.02907 1.84702 1.01696 1.20519 0.90868 0.96572 0.88715 1.19358 0.83019 1.29480 1.04955 0.90654 1.25533 1.00117 0.98354 0.99824 1.70257 1.34791 1.37592 1.15587 0.85539 0.82751 0.75937 0.78084 1.20823 1.24042 1.19219 1.70742 0.98098 1.28697 1.28849 1.22841 0.91106 0.81939 0.97104 1.68006 1.00344 1.31882 1.21580 0.87263 0.84531 0.89970 0.74414 0.87773 0.91374 0.83455 0.75001 0.88767 0.91062 0.94046 0.91285 0.89387 0.99157 0.96189 0.94692 0.95198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 10.19 71.24 0.73 -0.12 16 2 C 0.23 4.39 6.83 43.11 0.29 4.69 16 3 C -0.19 -2.44 9.39 22.15 0.21 -2.24 16 4 C 0.17 3.68 6.86 41.29 0.28 3.97 16 5 C -0.12 -1.53 10.13 71.24 0.72 -0.81 16 6 N -0.33 -11.88 3.91 -185.76 -0.73 -12.60 16 7 N -0.30 -13.00 12.67 -52.60 -0.67 -13.67 16 8 C 0.23 11.10 7.92 137.39 1.09 12.19 16 9 C 0.60 29.64 7.81 86.87 0.68 30.32 16 10 O -0.56 -29.25 16.73 -3.81 -0.06 -29.31 16 11 N -0.65 -29.51 4.48 -445.15 -2.00 -31.50 16 12 C 0.12 4.57 2.88 44.99 0.13 4.70 16 13 H 0.05 2.40 7.58 -2.39 -0.02 2.38 16 14 C -0.15 -4.41 9.48 71.98 0.68 -3.73 16 15 C 0.14 5.40 5.36 86.38 0.46 5.86 16 16 N -0.61 -30.44 2.82 -726.93 -2.05 -32.49 16 17 C 0.18 9.12 9.01 127.77 1.15 10.27 16 18 C -0.24 -12.99 8.02 84.03 0.67 -12.31 16 19 H 0.08 3.98 7.84 -2.91 -0.02 3.95 16 20 C -0.04 -2.53 5.13 84.86 0.44 -2.09 16 21 N -0.93 -58.63 10.58 21.65 0.23 -58.40 16 22 Si 0.95 48.76 29.57 68.60 2.03 50.79 16 23 H -0.28 -13.93 7.11 99.48 0.71 -13.22 16 24 H -0.31 -16.82 7.11 99.48 0.71 -16.11 16 25 H -0.27 -13.38 7.11 99.48 0.71 -12.67 16 26 N -0.53 -25.05 10.89 -192.62 -2.10 -27.15 16 27 C 0.43 17.43 8.99 261.57 2.35 19.78 16 28 N -0.50 -16.48 10.40 -185.59 -1.93 -18.41 16 29 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.14 -0.15 8.09 -2.39 -0.02 -0.17 16 31 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.24 -0.24 8.06 -2.91 -0.02 -0.26 16 33 H 0.10 1.24 8.14 -2.38 -0.02 1.23 16 34 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.15 0.39 8.09 -2.39 -0.02 0.37 16 36 H 0.41 19.25 7.07 -92.71 -0.66 18.60 16 37 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 40 H 0.07 2.44 8.03 -2.39 -0.02 2.43 16 41 H 0.09 2.85 7.86 -2.39 -0.02 2.83 16 42 H -0.01 -0.58 7.42 -2.39 -0.02 -0.60 16 43 H 0.02 1.08 7.19 -2.39 -0.02 1.07 16 44 H 0.03 1.48 7.84 -2.39 -0.02 1.47 16 45 H 0.24 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -91.58 381.73 2.98 -88.61 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: 0.36 Total: 13.68 kcal Atomic # 6 Polarization: 60.59 SS G_CDS: 9.88 Total: 70.47 kcal Atomic # 7 Polarization: -185.00 SS G_CDS: -9.24 Total: -194.23 kcal Atomic # 8 Polarization: -29.25 SS G_CDS: -0.06 Total: -29.31 kcal Atomic # 14 Polarization: 48.76 SS G_CDS: 2.03 Total: 50.79 kcal Total: -91.58 2.98 -88.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275714869.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.508 kcal (2) G-P(sol) polarization free energy of solvation -91.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds