Wall clock time and date at job start Tue Mar 31 2020 16:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34777 * 119.99763 * 2 1 4 4 O 1.21286 * 120.00199 * 184.22208 * 3 2 1 5 5 C 1.50706 * 120.00054 * 4.22302 * 3 2 1 6 6 C 1.53005 * 115.54921 * 283.25106 * 5 3 2 7 7 C 1.50697 * 109.47064 * 295.63092 * 6 5 3 8 8 C 1.38249 * 119.97168 * 275.16592 * 7 6 5 9 9 C 1.38206 * 120.02374 * 179.76730 * 8 7 6 10 10 C 1.38456 * 119.97020 * 0.51538 * 9 8 7 11 11 F 1.35103 * 120.02150 * 179.76492 * 10 9 8 12 12 C 1.38453 * 119.95337 * 359.74294 * 10 9 8 13 13 C 1.38195 * 119.97556 * 0.02562 * 12 10 9 14 14 C 1.52998 * 117.49920 * 137.58667 * 5 3 2 15 15 C 1.52994 * 117.49957 * 68.92518 * 5 3 2 16 16 C 1.46494 * 120.00199 * 180.02562 * 2 1 3 17 17 C 1.53501 * 114.20540 * 63.79209 * 16 2 1 18 18 N 1.47069 * 87.98360 * 220.34368 * 17 16 2 19 19 C 1.36936 * 136.06020 * 207.08320 * 18 17 16 20 20 H 1.07998 * 119.99711 * 354.12979 * 19 18 17 21 21 C 1.38808 * 120.00116 * 174.13539 * 19 18 17 22 22 N 1.31617 * 119.99780 * 181.50372 * 21 19 18 23 23 Si 1.86800 * 120.00132 * 1.50637 * 21 19 18 24 24 H 1.48497 * 109.46852 * 176.55400 * 23 21 19 25 25 H 1.48498 * 109.46979 * 296.55238 * 23 21 19 26 26 H 1.48497 * 109.46909 * 56.55345 * 23 21 19 27 27 C 1.47071 * 87.88510 * 27.33998 * 18 17 16 28 28 H 1.09003 * 109.46853 * 274.77831 * 1 2 3 29 29 H 1.09006 * 109.47251 * 34.77531 * 1 2 3 30 30 H 1.08999 * 109.47062 * 154.77782 * 1 2 3 31 31 H 1.08998 * 109.46425 * 55.62764 * 6 5 3 32 32 H 1.08998 * 109.46670 * 175.63007 * 6 5 3 33 33 H 1.07999 * 119.98717 * 0.03500 * 8 7 6 34 34 H 1.08003 * 120.00990 * 180.25816 * 9 8 7 35 35 H 1.08003 * 120.01488 * 179.97438 * 12 10 9 36 36 H 1.08001 * 119.98961 * 180.02562 * 13 12 10 37 37 H 1.09005 * 117.49888 * 359.97438 * 14 5 3 38 38 H 1.08997 * 117.50554 * 145.02025 * 14 5 3 39 39 H 1.09004 * 117.50203 * 214.98091 * 15 5 3 40 40 H 1.09001 * 117.49931 * 359.97438 * 15 5 3 41 41 H 1.09001 * 113.41521 * 196.98695 * 16 2 1 42 42 H 1.08997 * 113.47041 * 105.56799 * 17 16 2 43 43 H 1.08999 * 113.46717 * 335.12377 * 17 16 2 44 44 H 0.96996 * 120.00458 * 5.03014 * 22 21 19 45 45 H 1.09009 * 113.46544 * 87.43601 * 27 18 17 46 46 H 1.08998 * 113.47200 * 217.87679 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3492 1.1687 -0.0773 5 6 1.3883 2.4706 0.0961 6 6 0.7004 2.9323 -1.1902 7 6 1.7413 3.2186 -2.2416 8 6 2.3604 4.4540 -2.2822 9 6 3.3187 4.7160 -3.2431 10 6 3.6507 3.7443 -4.1718 11 9 4.5839 4.0010 -5.1145 12 6 3.0261 2.5093 -4.1335 13 6 2.0717 2.2478 -3.1689 14 6 1.9614 3.5495 1.0171 15 6 0.6953 2.7906 1.4220 16 6 2.1975 -1.2687 -0.0006 17 6 1.9768 -2.1223 -1.2571 18 7 1.9315 -3.3042 -0.3830 19 6 2.2063 -4.6392 -0.5148 20 1 2.4592 -5.0454 -1.4830 21 6 2.1598 -5.4703 0.5960 22 7 2.4527 -6.7477 0.4747 23 14 1.6812 -4.7759 2.2628 24 1 1.6262 -5.8752 3.2596 25 1 2.6890 -3.7717 2.6884 26 1 0.3482 -4.1289 2.1652 27 6 1.4549 -2.4224 0.6933 28 1 -0.3633 0.0856 1.0241 29 1 -0.3634 0.8442 -0.5862 30 1 -0.3633 -0.9297 -0.4379 31 1 0.0310 2.1489 -1.5454 32 1 0.1269 3.8375 -0.9906 33 1 2.0983 5.2131 -1.5601 34 1 3.8052 5.6798 -3.2720 35 1 3.2841 1.7507 -4.8577 36 1 1.5846 1.2844 -3.1385 37 1 2.8811 3.3165 1.5539 38 1 1.8480 4.5883 0.7070 39 1 -0.2507 3.3303 1.3781 40 1 0.7817 2.0582 2.2247 41 1 3.2425 -1.1656 0.2917 42 1 2.8271 -2.1191 -1.9389 43 1 1.0316 -1.9180 -1.7601 44 1 2.7714 -7.0939 -0.3735 45 1 0.3721 -2.2971 0.7043 46 1 1.8606 -2.6748 1.6730 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277670758.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:41 Heat of formation + Delta-G solvation = 46.075585 kcal Electronic energy + Delta-G solvation = -28944.218262 eV Core-core repulsion = 24944.872694 eV Total energy + Delta-G solvation = -3999.345568 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -49.02619 -40.71092 -39.31430 -38.38346 -36.65321 -34.63919 -32.31859 -32.23209 -31.32009 -28.28429 -27.21690 -26.90622 -25.41878 -24.27516 -23.27588 -22.66155 -22.09239 -21.38231 -19.43986 -18.68794 -17.84183 -17.57063 -16.94696 -16.61999 -16.34687 -15.80755 -15.74066 -15.50147 -15.31669 -14.83950 -14.42882 -14.27049 -13.80592 -13.66710 -13.60488 -13.29245 -13.19268 -12.82467 -12.59576 -12.23675 -12.15274 -12.05557 -12.01939 -11.89090 -11.78131 -11.60515 -11.33219 -11.18090 -10.77753 -10.57679 -10.48992 -10.29474 -9.62012 -9.33577 -9.28023 -9.16296 -9.00868 -8.71967 -8.32404 -7.22174 -6.35709 -3.29880 0.93898 1.05957 2.65128 2.97786 3.31308 3.35441 3.39450 3.50947 3.61259 4.09867 4.24988 4.41260 4.47221 4.51938 4.54230 4.64464 4.70692 4.77377 4.84754 4.98234 5.04360 5.10707 5.12059 5.34508 5.35737 5.35777 5.41480 5.49522 5.55609 5.63941 5.66160 5.71015 5.79069 5.84920 5.86476 5.89502 5.93793 6.04819 6.09041 6.16931 6.30428 6.32593 6.45020 6.70675 6.90956 7.02716 7.54176 8.18557 8.29622 8.92106 9.43608 10.27496 11.15818 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015407 B = 0.003338 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.863991 B = 8386.584511 C = 9617.456341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.597 5.597 3 C 0.549 3.451 4 O -0.531 6.531 5 C -0.150 4.150 6 C -0.039 4.039 7 C -0.088 4.088 8 C -0.081 4.081 9 C -0.154 4.154 10 C 0.093 3.907 11 F -0.143 7.143 12 C -0.147 4.147 13 C -0.077 4.077 14 C -0.143 4.143 15 C -0.159 4.159 16 C 0.103 3.897 17 C 0.113 3.887 18 N -0.620 5.620 19 C -0.303 4.303 20 H 0.084 0.916 21 C -0.023 4.023 22 N -0.933 5.933 23 Si 1.074 2.926 24 H -0.294 1.294 25 H -0.291 1.291 26 H -0.290 1.290 27 C 0.085 3.915 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.130 0.870 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.130 0.870 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.104 0.896 40 H 0.100 0.900 41 H 0.122 0.878 42 H 0.049 0.951 43 H 0.039 0.961 44 H 0.262 0.738 45 H 0.048 0.952 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.867 26.711 -3.109 27.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.329 5.329 3 C 0.336 3.664 4 O -0.406 6.406 5 C -0.153 4.153 6 C -0.076 4.076 7 C -0.088 4.088 8 C -0.099 4.099 9 C -0.172 4.172 10 C 0.074 3.926 11 F -0.121 7.121 12 C -0.166 4.166 13 C -0.095 4.095 14 C -0.181 4.181 15 C -0.196 4.196 16 C -0.001 4.001 17 C -0.015 4.015 18 N -0.349 5.349 19 C -0.429 4.429 20 H 0.102 0.898 21 C -0.222 4.222 22 N -0.574 5.574 23 Si 0.908 3.092 24 H -0.221 1.221 25 H -0.220 1.220 26 H -0.217 1.217 27 C -0.041 4.041 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.147 0.853 34 H 0.151 0.849 35 H 0.152 0.848 36 H 0.148 0.852 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.123 0.877 40 H 0.118 0.882 41 H 0.140 0.860 42 H 0.068 0.932 43 H 0.057 0.943 44 H 0.072 0.928 45 H 0.066 0.934 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.421 25.982 -1.655 26.815 hybrid contribution 0.382 0.310 -1.904 1.966 sum -6.038 26.292 -3.558 27.210 Atomic orbital electron populations 1.21948 0.79800 1.03355 1.02028 1.47854 1.06895 1.05664 1.72498 1.19451 0.87168 0.83783 0.76021 1.90706 1.13969 1.87008 1.48948 1.21364 1.04871 0.95951 0.93116 1.20170 0.94953 1.02161 0.90285 1.19765 0.98622 0.94038 0.96425 1.20806 0.95229 0.96618 0.97275 1.21083 1.00367 0.99538 0.96249 1.17723 0.90424 0.95132 0.89287 1.91492 1.63165 1.94570 1.62916 1.21139 0.98292 0.95969 1.01208 1.20924 0.96299 0.98898 0.93409 1.22995 0.98034 0.96125 1.00929 1.23159 0.97269 1.03270 0.95919 1.23540 0.97543 0.79795 0.99248 1.22744 0.98767 0.86047 0.93947 1.45761 1.76760 1.03588 1.08748 1.20144 1.45719 0.80107 0.96929 0.89810 1.25724 0.99898 0.94571 1.01987 1.70913 1.46387 1.11992 1.28157 0.83654 0.75983 0.73585 0.76017 1.22144 1.21970 1.21728 1.23271 0.97273 0.88652 0.94939 0.92435 0.91086 0.90216 0.89604 0.89552 0.85255 0.84915 0.84759 0.85222 0.88037 0.88042 0.87735 0.88162 0.86035 0.93236 0.94345 0.92824 0.93427 0.92542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.76 8.57 59.85 0.51 1.27 16 2 N -0.60 -8.49 3.11 -173.55 -0.54 -9.03 16 3 C 0.55 7.86 6.38 -10.98 -0.07 7.79 16 4 O -0.53 -9.86 16.53 5.55 0.09 -9.77 16 5 C -0.15 -1.46 0.86 -155.66 -0.13 -1.59 16 6 C -0.04 -0.30 4.98 -27.88 -0.14 -0.44 16 7 C -0.09 -0.86 4.83 -104.62 -0.51 -1.37 16 8 C -0.08 -0.73 9.72 -39.59 -0.38 -1.12 16 9 C -0.15 -1.52 10.03 -39.51 -0.40 -1.91 16 10 C 0.09 1.09 7.30 -39.42 -0.29 0.80 16 11 F -0.14 -1.76 17.27 2.25 0.04 -1.72 16 12 C -0.15 -1.69 10.03 -39.52 -0.40 -2.09 16 13 C -0.08 -0.86 9.53 -39.59 -0.38 -1.23 16 14 C -0.14 -1.24 9.84 -26.69 -0.26 -1.51 16 15 C -0.16 -1.20 9.44 -26.70 -0.25 -1.45 16 16 C 0.10 1.88 4.52 -67.68 -0.31 1.57 16 17 C 0.11 2.23 8.25 -8.49 -0.07 2.16 16 18 N -0.62 -15.20 3.69 -184.59 -0.68 -15.88 16 19 C -0.30 -8.74 11.09 -15.06 -0.17 -8.90 16 20 H 0.08 2.54 8.05 -52.49 -0.42 2.12 16 21 C -0.02 -0.68 5.50 -17.43 -0.10 -0.78 16 22 N -0.93 -29.42 13.70 55.49 0.76 -28.65 16 23 Si 1.07 26.75 25.06 -169.99 -4.26 22.49 16 24 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 25 H -0.29 -6.92 6.40 56.52 0.36 -6.56 16 26 H -0.29 -6.64 6.70 56.52 0.38 -6.26 16 27 C 0.08 1.75 5.36 -8.36 -0.04 1.71 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.56 4.81 -51.93 -0.25 0.31 16 30 H 0.08 0.92 6.00 -51.93 -0.31 0.60 16 31 H 0.09 0.61 5.79 -51.93 -0.30 0.31 16 32 H 0.09 0.46 8.07 -51.93 -0.42 0.05 16 33 H 0.13 0.83 7.93 -52.49 -0.42 0.41 16 34 H 0.13 1.04 8.06 -52.48 -0.42 0.61 16 35 H 0.13 1.39 8.06 -52.48 -0.42 0.97 16 36 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 37 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.10 0.65 8.01 -51.93 -0.42 0.24 16 39 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.12 2.47 7.40 -51.93 -0.38 2.08 16 42 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.04 0.70 7.31 -51.93 -0.38 0.32 16 44 H 0.26 8.15 8.73 -40.82 -0.36 7.79 16 45 H 0.05 0.91 6.22 -51.92 -0.32 0.59 16 46 H 0.06 1.24 3.89 -51.93 -0.20 1.04 16 LS Contribution 372.87 15.07 5.62 5.62 Total: -1.00 -34.86 372.87 -8.77 -43.63 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -6.42 Total: 0.42 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -3.38 Total: -7.09 kcal Atomic # 7 Polarization: -53.11 SS G_CDS: -0.46 Total: -53.57 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.09 Total: -9.77 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 26.75 SS G_CDS: -4.26 Total: 22.49 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.86 -8.77 -43.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277670758.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.705 kcal (2) G-P(sol) polarization free energy of solvation -34.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds