Wall clock time and date at job start Tue Mar 31 2020 16:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34777 * 119.99763 * 2 1 4 4 O 1.21286 * 120.00199 * 184.22208 * 3 2 1 5 5 C 1.50706 * 120.00054 * 4.22302 * 3 2 1 6 6 C 1.53005 * 115.54921 * 283.25106 * 5 3 2 7 7 C 1.50697 * 109.47064 * 295.63092 * 6 5 3 8 8 C 1.38249 * 119.97168 * 275.16592 * 7 6 5 9 9 C 1.38206 * 120.02374 * 179.76730 * 8 7 6 10 10 C 1.38456 * 119.97020 * 0.51538 * 9 8 7 11 11 F 1.35103 * 120.02150 * 179.76492 * 10 9 8 12 12 C 1.38453 * 119.95337 * 359.74294 * 10 9 8 13 13 C 1.38195 * 119.97556 * 0.02562 * 12 10 9 14 14 C 1.52998 * 117.49920 * 137.58667 * 5 3 2 15 15 C 1.52994 * 117.49957 * 68.92518 * 5 3 2 16 16 C 1.46494 * 120.00199 * 180.02562 * 2 1 3 17 17 C 1.53501 * 114.20540 * 63.79209 * 16 2 1 18 18 N 1.47069 * 87.98360 * 220.34368 * 17 16 2 19 19 C 1.36936 * 136.06020 * 207.08320 * 18 17 16 20 20 H 1.07998 * 119.99711 * 354.12979 * 19 18 17 21 21 C 1.38808 * 120.00116 * 174.13539 * 19 18 17 22 22 N 1.31617 * 119.99780 * 181.50372 * 21 19 18 23 23 Si 1.86800 * 120.00132 * 1.50637 * 21 19 18 24 24 H 1.48497 * 109.46852 * 176.55400 * 23 21 19 25 25 H 1.48498 * 109.46979 * 296.55238 * 23 21 19 26 26 H 1.48497 * 109.46909 * 56.55345 * 23 21 19 27 27 C 1.47071 * 87.88510 * 27.33998 * 18 17 16 28 28 H 1.09003 * 109.46853 * 274.77831 * 1 2 3 29 29 H 1.09006 * 109.47251 * 34.77531 * 1 2 3 30 30 H 1.08999 * 109.47062 * 154.77782 * 1 2 3 31 31 H 1.08998 * 109.46425 * 55.62764 * 6 5 3 32 32 H 1.08998 * 109.46670 * 175.63007 * 6 5 3 33 33 H 1.07999 * 119.98717 * 0.03500 * 8 7 6 34 34 H 1.08003 * 120.00990 * 180.25816 * 9 8 7 35 35 H 1.08003 * 120.01488 * 179.97438 * 12 10 9 36 36 H 1.08001 * 119.98961 * 180.02562 * 13 12 10 37 37 H 1.09005 * 117.49888 * 359.97438 * 14 5 3 38 38 H 1.08997 * 117.50554 * 145.02025 * 14 5 3 39 39 H 1.09004 * 117.50203 * 214.98091 * 15 5 3 40 40 H 1.09001 * 117.49931 * 359.97438 * 15 5 3 41 41 H 1.09001 * 113.41521 * 196.98695 * 16 2 1 42 42 H 1.08997 * 113.47041 * 105.56799 * 17 16 2 43 43 H 1.08999 * 113.46717 * 335.12377 * 17 16 2 44 44 H 0.96996 * 120.00458 * 5.03014 * 22 21 19 45 45 H 1.09009 * 113.46544 * 87.43601 * 27 18 17 46 46 H 1.08998 * 113.47200 * 217.87679 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3492 1.1687 -0.0773 5 6 1.3883 2.4706 0.0961 6 6 0.7004 2.9323 -1.1902 7 6 1.7413 3.2186 -2.2416 8 6 2.3604 4.4540 -2.2822 9 6 3.3187 4.7160 -3.2431 10 6 3.6507 3.7443 -4.1718 11 9 4.5839 4.0010 -5.1145 12 6 3.0261 2.5093 -4.1335 13 6 2.0717 2.2478 -3.1689 14 6 1.9614 3.5495 1.0171 15 6 0.6953 2.7906 1.4220 16 6 2.1975 -1.2687 -0.0006 17 6 1.9768 -2.1223 -1.2571 18 7 1.9315 -3.3042 -0.3830 19 6 2.2063 -4.6392 -0.5148 20 1 2.4592 -5.0454 -1.4830 21 6 2.1598 -5.4703 0.5960 22 7 2.4527 -6.7477 0.4747 23 14 1.6812 -4.7759 2.2628 24 1 1.6262 -5.8752 3.2596 25 1 2.6890 -3.7717 2.6884 26 1 0.3482 -4.1289 2.1652 27 6 1.4549 -2.4224 0.6933 28 1 -0.3633 0.0856 1.0241 29 1 -0.3634 0.8442 -0.5862 30 1 -0.3633 -0.9297 -0.4379 31 1 0.0310 2.1489 -1.5454 32 1 0.1269 3.8375 -0.9906 33 1 2.0983 5.2131 -1.5601 34 1 3.8052 5.6798 -3.2720 35 1 3.2841 1.7507 -4.8577 36 1 1.5846 1.2844 -3.1385 37 1 2.8811 3.3165 1.5539 38 1 1.8480 4.5883 0.7070 39 1 -0.2507 3.3303 1.3781 40 1 0.7817 2.0582 2.2247 41 1 3.2425 -1.1656 0.2917 42 1 2.8271 -2.1191 -1.9389 43 1 1.0316 -1.9180 -1.7601 44 1 2.7714 -7.0939 -0.3735 45 1 0.3721 -2.2971 0.7043 46 1 1.8606 -2.6748 1.6730 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277670758.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:40 Heat of formation + Delta-G solvation = 24.043311 kcal Electronic energy + Delta-G solvation = -28945.173653 eV Core-core repulsion = 24944.872694 eV Total energy + Delta-G solvation = -4000.300959 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -49.92027 -41.76490 -40.40646 -39.56063 -37.57083 -35.97662 -34.38662 -32.96515 -32.07288 -30.05213 -28.05794 -27.90178 -27.06193 -25.61168 -24.05143 -23.38531 -23.24232 -22.42408 -20.99573 -19.78462 -19.57062 -18.66362 -18.04238 -17.66147 -17.33978 -17.19404 -16.67083 -16.57500 -16.28657 -15.96991 -15.71121 -15.22485 -15.04225 -15.01111 -14.52457 -14.38858 -14.23747 -13.86218 -13.60767 -13.56251 -13.37793 -13.35623 -13.26501 -12.94038 -12.76627 -12.62900 -12.35574 -12.33071 -12.26457 -11.92100 -11.46636 -11.36673 -11.15297 -11.10253 -10.94043 -10.61688 -10.04513 -9.60874 -9.48428 -9.26704 -8.69456 -5.55099 0.15486 0.29677 1.34593 1.45487 1.58962 1.66210 1.87850 2.50187 2.56818 2.82492 2.95848 3.16750 3.30625 3.45740 3.55610 3.72444 3.78287 3.85333 3.96059 4.01461 4.05206 4.18203 4.24620 4.30321 4.35796 4.39068 4.45666 4.51328 4.61611 4.72051 4.79428 4.82751 4.86481 4.91712 4.99514 5.00425 5.05840 5.09475 5.10797 5.17810 5.22494 5.28581 5.31725 5.57749 5.58270 5.88484 5.95894 6.45559 6.63333 7.20150 7.24802 8.17146 8.84472 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015407 B = 0.003338 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.863991 B = 8386.584511 C = 9617.456341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.594 5.594 3 C 0.545 3.455 4 O -0.584 6.584 5 C -0.159 4.159 6 C -0.033 4.033 7 C -0.091 4.091 8 C -0.078 4.078 9 C -0.156 4.156 10 C 0.066 3.934 11 F -0.154 7.154 12 C -0.168 4.168 13 C -0.095 4.095 14 C -0.149 4.149 15 C -0.133 4.133 16 C 0.125 3.875 17 C 0.115 3.885 18 N -0.654 5.654 19 C -0.292 4.292 20 H 0.050 0.950 21 C -0.082 4.082 22 N -0.968 5.968 23 Si 1.112 2.888 24 H -0.302 1.302 25 H -0.278 1.278 26 H -0.252 1.252 27 C 0.086 3.914 28 H 0.078 0.922 29 H 0.105 0.895 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.127 0.873 33 H 0.166 0.834 34 H 0.152 0.848 35 H 0.130 0.870 36 H 0.128 0.872 37 H 0.073 0.927 38 H 0.132 0.868 39 H 0.144 0.856 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.035 0.965 43 H 0.068 0.932 44 H 0.247 0.753 45 H 0.080 0.920 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.232 30.943 -1.273 32.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.326 5.326 3 C 0.334 3.666 4 O -0.463 6.463 5 C -0.162 4.162 6 C -0.070 4.070 7 C -0.091 4.091 8 C -0.096 4.096 9 C -0.175 4.175 10 C 0.047 3.953 11 F -0.133 7.133 12 C -0.186 4.186 13 C -0.113 4.113 14 C -0.186 4.186 15 C -0.170 4.170 16 C 0.019 3.981 17 C -0.012 4.012 18 N -0.383 5.383 19 C -0.420 4.420 20 H 0.068 0.932 21 C -0.274 4.274 22 N -0.613 5.613 23 Si 0.938 3.062 24 H -0.230 1.230 25 H -0.206 1.206 26 H -0.177 1.177 27 C -0.039 4.039 28 H 0.097 0.903 29 H 0.123 0.877 30 H 0.091 0.909 31 H 0.113 0.887 32 H 0.145 0.855 33 H 0.183 0.817 34 H 0.170 0.830 35 H 0.148 0.852 36 H 0.146 0.854 37 H 0.092 0.908 38 H 0.150 0.850 39 H 0.161 0.839 40 H 0.109 0.891 41 H 0.113 0.887 42 H 0.053 0.947 43 H 0.086 0.914 44 H 0.056 0.944 45 H 0.097 0.903 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.835 30.282 0.150 31.839 hybrid contribution 1.489 -0.940 -2.577 3.121 sum -8.346 29.341 -2.427 30.602 Atomic orbital electron populations 1.22279 0.76955 1.04553 1.04082 1.47847 1.08424 1.04061 1.72254 1.20349 0.86818 0.85124 0.74287 1.90688 1.16645 1.87840 1.51140 1.21270 1.06099 0.93513 0.95336 1.20292 0.94259 1.04284 0.88185 1.20124 0.98875 0.93816 0.96260 1.21235 0.94097 0.97097 0.97153 1.21422 1.00491 0.99839 0.95717 1.18031 0.91083 0.95983 0.90192 1.91454 1.63690 1.94661 1.63511 1.21266 0.99180 0.96283 1.01919 1.21069 0.96605 0.99525 0.94139 1.23111 0.97775 0.97394 1.00337 1.23315 0.98225 1.02184 0.93302 1.22765 0.96509 0.81627 0.97230 1.22910 0.99461 0.84543 0.94265 1.45759 1.77788 1.03014 1.11737 1.19985 1.43992 0.82536 0.95472 0.93242 1.27120 1.00243 0.94285 1.05734 1.71018 1.49198 1.13616 1.27471 0.83236 0.77927 0.73342 0.71660 1.23025 1.20554 1.17677 1.23445 0.98958 0.88023 0.93452 0.90299 0.87721 0.90911 0.88685 0.85507 0.81688 0.82981 0.85198 0.85440 0.90813 0.85011 0.83853 0.89128 0.88738 0.94688 0.91441 0.94434 0.90277 0.93422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.02 8.57 127.77 1.09 2.12 16 2 N -0.59 -15.37 3.11 -821.38 -2.55 -17.92 16 3 C 0.54 14.44 6.38 87.66 0.56 15.00 16 4 O -0.58 -21.68 16.53 -3.05 -0.05 -21.73 16 5 C -0.16 -2.40 0.86 -52.93 -0.05 -2.45 16 6 C -0.03 -0.34 4.98 29.85 0.15 -0.19 16 7 C -0.09 -1.49 4.83 -19.86 -0.10 -1.58 16 8 C -0.08 -1.13 9.72 22.26 0.22 -0.91 16 9 C -0.16 -2.80 10.03 22.31 0.22 -2.58 16 10 C 0.07 1.55 7.30 22.37 0.16 1.71 16 11 F -0.15 -3.94 17.27 44.97 0.78 -3.17 16 12 C -0.17 -3.98 10.03 22.31 0.22 -3.75 16 13 C -0.10 -2.03 9.53 22.26 0.21 -1.82 16 14 C -0.15 -1.93 9.84 30.62 0.30 -1.63 16 15 C -0.13 -1.24 9.44 30.62 0.29 -0.95 16 16 C 0.12 4.43 4.52 45.55 0.21 4.64 16 17 C 0.11 4.51 8.25 83.18 0.69 5.19 16 18 N -0.65 -32.00 3.69 -737.92 -2.72 -34.72 16 19 C -0.29 -17.37 11.09 84.03 0.93 -16.44 16 20 H 0.05 3.18 8.05 -2.91 -0.02 3.16 16 21 C -0.08 -4.97 5.50 84.86 0.47 -4.50 16 22 N -0.97 -63.33 13.70 21.65 0.30 -63.04 16 23 Si 1.11 53.49 25.06 68.60 1.72 55.21 16 24 H -0.30 -14.84 7.11 99.48 0.71 -14.13 16 25 H -0.28 -12.63 6.40 99.48 0.64 -11.99 16 26 H -0.25 -10.45 6.70 99.48 0.67 -9.79 16 27 C 0.09 3.38 5.36 83.27 0.45 3.83 16 28 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.10 1.04 4.81 -2.38 -0.01 1.02 16 30 H 0.07 1.34 6.00 -2.39 -0.01 1.33 16 31 H 0.09 0.81 5.79 -2.39 -0.01 0.79 16 32 H 0.13 0.37 8.07 -2.39 -0.02 0.35 16 33 H 0.17 1.14 7.93 -2.91 -0.02 1.12 16 34 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 35 H 0.13 2.96 8.06 -2.91 -0.02 2.94 16 36 H 0.13 2.63 8.06 -2.91 -0.02 2.61 16 37 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 38 H 0.13 0.89 8.01 -2.39 -0.02 0.87 16 39 H 0.14 0.31 8.14 -2.39 -0.02 0.29 16 40 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.09 3.92 7.40 -2.39 -0.02 3.90 16 42 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.07 2.30 7.31 -2.39 -0.02 2.28 16 44 H 0.25 16.23 8.73 -92.71 -0.81 15.42 16 45 H 0.08 2.67 6.22 -2.38 -0.01 2.65 16 46 H 0.05 1.99 3.89 -2.39 -0.01 1.98 16 Total: -1.00 -82.35 372.87 4.35 -78.01 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: 0.85 Total: 11.68 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: 6.03 Total: -4.32 kcal Atomic # 7 Polarization: -110.71 SS G_CDS: -4.98 Total: -115.68 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.05 Total: -21.73 kcal Atomic # 9 Polarization: -3.94 SS G_CDS: 0.78 Total: -3.17 kcal Atomic # 14 Polarization: 53.49 SS G_CDS: 1.72 Total: 55.21 kcal Total: -82.35 4.35 -78.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277670758.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.051 kcal (2) G-P(sol) polarization free energy of solvation -82.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds