Wall clock time and date at job start Tue Mar 31 2020 16:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42909 * 114.00088 * 2 1 4 4 C 1.53000 * 109.47274 * 180.02562 * 3 2 1 5 5 C 1.50695 * 115.54591 * 294.49958 * 4 3 2 6 6 O 1.21281 * 119.99899 * 114.27224 * 5 4 3 7 7 N 1.34777 * 120.00008 * 294.26463 * 5 4 3 8 8 C 1.46508 * 119.99809 * 183.17292 * 7 5 4 9 9 C 1.52995 * 109.47098 * 180.02562 * 8 7 5 10 10 H 1.09002 * 109.49479 * 305.06491 * 9 8 7 11 11 C 1.53192 * 109.52789 * 65.14293 * 9 8 7 12 12 N 1.46922 * 108.78195 * 174.60376 * 11 9 8 13 13 C 1.36938 * 120.63436 * 126.36825 * 12 11 9 14 14 H 1.07997 * 119.99727 * 331.31593 * 13 12 11 15 15 C 1.38810 * 120.00221 * 151.31677 * 13 12 11 16 16 N 1.31625 * 119.99524 * 344.22591 * 15 13 12 17 17 Si 1.86797 * 120.00059 * 164.22772 * 15 13 12 18 18 H 1.48498 * 109.47281 * 60.00123 * 17 15 13 19 19 H 1.48498 * 109.46744 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.46955 * 299.99616 * 17 15 13 21 21 C 1.46928 * 118.73405 * 306.39714 * 12 11 9 22 22 C 1.53165 * 108.77195 * 53.60672 * 21 12 11 23 23 C 1.53033 * 109.32588 * 305.35438 * 22 21 12 24 24 F 1.39902 * 109.46257 * 301.35877 * 23 22 21 25 25 F 1.39902 * 109.46097 * 181.38515 * 23 22 21 26 26 C 1.52996 * 117.49713 * 80.16695 * 4 3 2 27 27 C 1.52994 * 117.49730 * 148.82758 * 4 3 2 28 28 H 1.08998 * 109.46698 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46857 * 299.99993 * 1 2 3 30 30 H 1.08999 * 109.47230 * 59.99413 * 1 2 3 31 31 H 1.08999 * 109.47048 * 60.00044 * 3 2 1 32 32 H 1.09001 * 109.46629 * 300.00222 * 3 2 1 33 33 H 0.96994 * 120.00154 * 3.17411 * 7 5 4 34 34 H 1.08993 * 109.47026 * 60.00072 * 8 7 5 35 35 H 1.09003 * 109.46793 * 300.00239 * 8 7 5 36 36 H 1.09004 * 109.58646 * 294.39547 * 11 9 8 37 37 H 1.09001 * 109.58592 * 54.81602 * 11 9 8 38 38 H 0.97005 * 119.99326 * 180.02562 * 16 15 13 39 39 H 1.09003 * 109.58448 * 173.39321 * 21 12 11 40 40 H 1.08998 * 109.58542 * 293.67377 * 21 12 11 41 41 H 1.08996 * 109.48139 * 185.40689 * 22 21 12 42 42 H 1.09004 * 109.50308 * 65.31602 * 22 21 12 43 43 H 1.09002 * 117.49890 * 215.00133 * 26 4 3 44 44 H 1.08997 * 117.50280 * 0.02645 * 26 4 3 45 45 H 1.09000 * 117.50030 * 359.97438 * 27 4 3 46 46 H 1.09001 * 117.49812 * 144.99202 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 4.1393 0.5712 1.2362 6 8 4.7077 -0.4980 1.1671 7 7 4.0479 1.2106 2.4191 8 6 4.6945 0.6485 3.6076 9 6 4.4385 1.5622 4.8077 10 1 4.7669 2.5742 4.5710 11 6 2.9414 1.5734 5.1326 12 7 2.7300 2.3493 6.3622 13 6 1.8365 3.3867 6.3877 14 1 1.6301 3.9438 5.4858 15 6 1.1962 3.7223 7.5727 16 7 1.1972 2.8786 8.5830 17 14 0.3332 5.3711 7.7335 18 1 -0.7352 5.4728 6.7072 19 1 -0.2683 5.4850 9.0864 20 1 1.3165 6.4659 7.5346 21 6 3.4960 1.9913 7.5638 22 6 4.9865 1.9755 7.2116 23 6 5.2155 1.0433 6.0198 24 9 4.7710 -0.2434 6.3423 25 9 6.5805 1.0023 5.7156 26 6 4.2209 0.8982 -1.3382 27 6 4.3311 2.2866 -0.7032 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.6887 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.5539 2.0428 2.4836 34 1 5.7675 0.5685 3.4337 35 1 4.2845 -0.3409 3.8105 36 1 2.3927 2.0339 4.3110 37 1 2.5920 0.5516 5.2807 38 1 0.7494 3.1130 9.4109 39 1 3.3132 2.7275 8.3465 40 1 3.1901 1.0046 7.9116 41 1 5.5586 1.6185 8.0679 42 1 5.3098 2.9837 6.9523 43 1 5.1086 0.2659 -1.3235 44 1 3.5853 0.7961 -2.2177 45 1 3.7679 3.0974 -1.1654 46 1 5.2913 2.5679 -0.2708 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278747707.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:59:27 Heat of formation + Delta-G solvation = -137.934750 kcal Electronic energy + Delta-G solvation = -30267.723408 eV Core-core repulsion = 25829.629329 eV Total energy + Delta-G solvation = -4438.094079 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -48.52334 -46.47526 -40.22877 -38.10706 -37.36006 -36.31967 -34.92656 -32.68609 -30.88367 -30.22897 -28.51580 -26.29483 -25.55504 -25.18091 -23.26176 -22.68079 -22.25290 -21.29839 -19.85635 -19.38721 -17.57312 -17.00733 -16.80414 -16.45549 -16.33351 -15.94137 -15.65941 -15.45667 -15.21217 -15.12583 -14.66107 -14.44597 -13.96766 -13.73682 -13.56524 -13.25906 -13.09885 -12.80085 -12.77359 -12.67179 -12.33820 -12.22127 -11.82879 -11.68611 -11.64398 -11.57823 -11.54079 -11.24189 -10.87345 -10.83334 -10.63973 -10.57404 -10.50331 -10.10094 -9.95707 -9.90663 -9.79004 -9.56265 -8.96851 -8.63575 -6.90766 -5.95785 -3.41835 2.62156 3.03253 3.21360 3.27822 3.34549 3.35224 3.82671 4.20010 4.34664 4.41099 4.54684 4.63498 4.67439 4.69266 4.80065 4.90216 5.04601 5.18736 5.19989 5.24969 5.26391 5.33417 5.35972 5.41365 5.48743 5.55571 5.59006 5.66259 5.66391 5.87972 5.92360 6.02105 6.14998 6.25632 6.31969 6.42675 6.46147 6.69330 6.94990 7.09176 7.44252 7.55754 7.61966 8.25233 8.29004 9.00813 9.62911 10.18948 11.13270 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.010329 B = 0.004008 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2710.166294 B = 6985.003975 C = 8695.028771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.382 6.382 3 C 0.103 3.897 4 C -0.162 4.162 5 C 0.556 3.444 6 O -0.533 6.533 7 N -0.718 5.718 8 C 0.126 3.874 9 C -0.155 4.155 10 H 0.101 0.899 11 C 0.154 3.846 12 N -0.590 5.590 13 C -0.263 4.263 14 H 0.068 0.932 15 C 0.008 3.992 16 N -0.899 5.899 17 Si 0.906 3.094 18 H -0.282 1.282 19 H -0.289 1.289 20 H -0.282 1.282 21 C 0.170 3.830 22 C -0.178 4.178 23 C 0.300 3.700 24 F -0.199 7.199 25 F -0.214 7.214 26 C -0.135 4.135 27 C -0.150 4.150 28 H 0.087 0.913 29 H 0.045 0.955 30 H 0.040 0.960 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.403 0.597 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.033 0.967 38 H 0.257 0.743 39 H 0.101 0.899 40 H 0.032 0.968 41 H 0.076 0.924 42 H 0.085 0.915 43 H 0.105 0.895 44 H 0.104 0.896 45 H 0.106 0.894 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.754 0.312 -15.132 15.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.301 6.301 3 C 0.026 3.974 4 C -0.165 4.165 5 C 0.341 3.659 6 O -0.409 6.409 7 N -0.370 5.370 8 C 0.002 3.998 9 C -0.176 4.176 10 H 0.120 0.880 11 C 0.027 3.973 12 N -0.312 5.312 13 C -0.392 4.392 14 H 0.085 0.915 15 C -0.192 4.192 16 N -0.542 5.542 17 Si 0.735 3.265 18 H -0.208 1.208 19 H -0.215 1.215 20 H -0.209 1.209 21 C 0.044 3.956 22 C -0.218 4.218 23 C 0.263 3.737 24 F -0.180 7.180 25 F -0.195 7.195 26 C -0.172 4.172 27 C -0.188 4.188 28 H 0.105 0.895 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.238 0.762 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.051 0.949 38 H 0.068 0.932 39 H 0.119 0.881 40 H 0.051 0.949 41 H 0.095 0.905 42 H 0.104 0.896 43 H 0.124 0.876 44 H 0.122 0.878 45 H 0.124 0.876 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.194 -0.643 -14.975 15.565 hybrid contribution -0.838 1.300 0.314 1.578 sum 3.356 0.657 -14.661 15.054 Atomic orbital electron populations 1.22778 0.80687 1.03047 1.00095 1.87979 1.19769 1.26981 1.95377 1.21888 0.88972 0.85454 1.01050 1.21329 0.94101 1.06876 0.94179 1.19247 0.79004 0.84369 0.83240 1.90691 1.43463 1.21024 1.85750 1.45862 1.55419 1.27388 1.08332 1.21321 0.97921 0.97421 0.83174 1.22963 1.01581 1.00655 0.92407 0.88048 1.20899 0.89049 0.96183 0.91188 1.44072 1.45372 1.35383 1.06364 1.19093 1.17636 1.06140 0.96302 0.91454 1.25107 0.97884 0.98413 0.97754 1.69999 1.45571 1.33863 1.04807 0.86327 0.79378 0.83706 0.77060 1.20791 1.21506 1.20865 1.20835 0.83185 1.00839 0.90720 1.23265 1.04253 0.98891 0.95430 1.21029 0.75124 0.80701 0.96798 1.92969 1.89144 1.41865 1.94009 1.92955 1.35176 1.96795 1.94543 1.22962 1.02585 0.97892 0.93796 1.23124 1.01179 0.92437 1.02035 0.89462 0.93588 0.94162 0.92152 0.92249 0.76250 0.91121 0.90648 0.91745 0.94932 0.93246 0.88133 0.94942 0.90549 0.89591 0.87610 0.87781 0.87557 0.87737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.38 -4.94 10.64 -35.23 -0.37 -5.31 16 3 C 0.10 1.08 5.76 37.16 0.21 1.29 16 4 C -0.16 -1.83 2.16 -155.67 -0.34 -2.16 16 5 C 0.56 8.30 7.02 -10.99 -0.08 8.22 16 6 O -0.53 -10.07 16.71 5.56 0.09 -9.98 16 7 N -0.72 -9.91 5.33 -60.29 -0.32 -10.24 16 8 C 0.13 1.97 4.84 -4.04 -0.02 1.95 16 9 C -0.15 -2.55 2.03 -90.50 -0.18 -2.73 16 10 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 11 C 0.15 2.97 5.40 -3.71 -0.02 2.95 16 12 N -0.59 -13.59 2.99 -172.34 -0.52 -14.11 16 13 C -0.26 -6.59 9.58 -15.06 -0.14 -6.74 16 14 H 0.07 1.62 7.88 -52.49 -0.41 1.21 16 15 C 0.01 0.21 4.94 -17.43 -0.09 0.12 16 16 N -0.90 -24.62 11.16 55.49 0.62 -24.00 16 17 Si 0.91 20.27 29.58 -169.99 -5.03 15.24 16 18 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 19 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 20 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 21 C 0.17 3.81 5.09 -3.72 -0.02 3.79 16 22 C -0.18 -3.26 5.62 -26.63 -0.15 -3.41 16 23 C 0.30 5.36 1.63 -26.69 -0.04 5.31 16 24 F -0.20 -3.88 15.73 2.25 0.04 -3.84 16 25 F -0.21 -3.72 16.41 2.25 0.04 -3.68 16 26 C -0.14 -1.33 9.78 -26.70 -0.26 -1.59 16 27 C -0.15 -1.24 9.92 -26.70 -0.26 -1.51 16 28 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 33 H 0.40 4.77 7.71 -40.82 -0.31 4.46 16 34 H 0.07 1.13 7.63 -51.93 -0.40 0.73 16 35 H 0.08 1.32 7.97 -51.93 -0.41 0.90 16 36 H 0.06 1.15 7.15 -51.93 -0.37 0.78 16 37 H 0.03 0.68 7.92 -51.93 -0.41 0.27 16 38 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 39 H 0.10 2.48 6.06 -51.93 -0.31 2.17 16 40 H 0.03 0.79 7.93 -51.93 -0.41 0.37 16 41 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 42 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 43 H 0.11 1.16 8.00 -51.93 -0.42 0.75 16 44 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 45 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 380.71 15.07 5.74 5.74 Total: -1.00 -31.10 380.71 -7.24 -38.34 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -7.25 Total: 4.94 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: -0.28 Total: 6.90 kcal Atomic # 7 Polarization: -48.13 SS G_CDS: -0.22 Total: -48.35 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -0.28 Total: -15.29 kcal Atomic # 9 Polarization: -7.60 SS G_CDS: 0.07 Total: -7.53 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.03 Total: 15.24 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.10 -7.24 -38.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278747707.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.596 kcal (2) G-P(sol) polarization free energy of solvation -31.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds