Wall clock time and date at job start Tue Mar 31 2020 16:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42909 * 114.00088 * 2 1 4 4 C 1.53000 * 109.47274 * 180.02562 * 3 2 1 5 5 C 1.50695 * 115.54591 * 294.49958 * 4 3 2 6 6 O 1.21281 * 119.99899 * 114.27224 * 5 4 3 7 7 N 1.34777 * 120.00008 * 294.26463 * 5 4 3 8 8 C 1.46508 * 119.99809 * 183.17292 * 7 5 4 9 9 C 1.52995 * 109.47098 * 180.02562 * 8 7 5 10 10 H 1.09002 * 109.49479 * 305.06491 * 9 8 7 11 11 C 1.53192 * 109.52789 * 65.14293 * 9 8 7 12 12 N 1.46922 * 108.78195 * 174.60376 * 11 9 8 13 13 C 1.36938 * 120.63436 * 126.36825 * 12 11 9 14 14 H 1.07997 * 119.99727 * 331.31593 * 13 12 11 15 15 C 1.38810 * 120.00221 * 151.31677 * 13 12 11 16 16 N 1.31625 * 119.99524 * 344.22591 * 15 13 12 17 17 Si 1.86797 * 120.00059 * 164.22772 * 15 13 12 18 18 H 1.48498 * 109.47281 * 60.00123 * 17 15 13 19 19 H 1.48498 * 109.46744 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.46955 * 299.99616 * 17 15 13 21 21 C 1.46928 * 118.73405 * 306.39714 * 12 11 9 22 22 C 1.53165 * 108.77195 * 53.60672 * 21 12 11 23 23 C 1.53033 * 109.32588 * 305.35438 * 22 21 12 24 24 F 1.39902 * 109.46257 * 301.35877 * 23 22 21 25 25 F 1.39902 * 109.46097 * 181.38515 * 23 22 21 26 26 C 1.52996 * 117.49713 * 80.16695 * 4 3 2 27 27 C 1.52994 * 117.49730 * 148.82758 * 4 3 2 28 28 H 1.08998 * 109.46698 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46857 * 299.99993 * 1 2 3 30 30 H 1.08999 * 109.47230 * 59.99413 * 1 2 3 31 31 H 1.08999 * 109.47048 * 60.00044 * 3 2 1 32 32 H 1.09001 * 109.46629 * 300.00222 * 3 2 1 33 33 H 0.96994 * 120.00154 * 3.17411 * 7 5 4 34 34 H 1.08993 * 109.47026 * 60.00072 * 8 7 5 35 35 H 1.09003 * 109.46793 * 300.00239 * 8 7 5 36 36 H 1.09004 * 109.58646 * 294.39547 * 11 9 8 37 37 H 1.09001 * 109.58592 * 54.81602 * 11 9 8 38 38 H 0.97005 * 119.99326 * 180.02562 * 16 15 13 39 39 H 1.09003 * 109.58448 * 173.39321 * 21 12 11 40 40 H 1.08998 * 109.58542 * 293.67377 * 21 12 11 41 41 H 1.08996 * 109.48139 * 185.40689 * 22 21 12 42 42 H 1.09004 * 109.50308 * 65.31602 * 22 21 12 43 43 H 1.09002 * 117.49890 * 215.00133 * 26 4 3 44 44 H 1.08997 * 117.50280 * 0.02645 * 26 4 3 45 45 H 1.09000 * 117.50030 * 359.97438 * 27 4 3 46 46 H 1.09001 * 117.49812 * 144.99202 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 4.1393 0.5712 1.2362 6 8 4.7077 -0.4980 1.1671 7 7 4.0479 1.2106 2.4191 8 6 4.6945 0.6485 3.6076 9 6 4.4385 1.5622 4.8077 10 1 4.7669 2.5742 4.5710 11 6 2.9414 1.5734 5.1326 12 7 2.7300 2.3493 6.3622 13 6 1.8365 3.3867 6.3877 14 1 1.6301 3.9438 5.4858 15 6 1.1962 3.7223 7.5727 16 7 1.1972 2.8786 8.5830 17 14 0.3332 5.3711 7.7335 18 1 -0.7352 5.4728 6.7072 19 1 -0.2683 5.4850 9.0864 20 1 1.3165 6.4659 7.5346 21 6 3.4960 1.9913 7.5638 22 6 4.9865 1.9755 7.2116 23 6 5.2155 1.0433 6.0198 24 9 4.7710 -0.2434 6.3423 25 9 6.5805 1.0023 5.7156 26 6 4.2209 0.8982 -1.3382 27 6 4.3311 2.2866 -0.7032 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.6887 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.5539 2.0428 2.4836 34 1 5.7675 0.5685 3.4337 35 1 4.2845 -0.3409 3.8105 36 1 2.3927 2.0339 4.3110 37 1 2.5920 0.5516 5.2807 38 1 0.7494 3.1130 9.4109 39 1 3.3132 2.7275 8.3465 40 1 3.1901 1.0046 7.9116 41 1 5.5586 1.6185 8.0679 42 1 5.3098 2.9837 6.9523 43 1 5.1086 0.2659 -1.3235 44 1 3.5853 0.7961 -2.2177 45 1 3.7679 3.0974 -1.1654 46 1 5.2913 2.5679 -0.2708 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278747707.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:59:26 Heat of formation + Delta-G solvation = -157.874185 kcal Electronic energy + Delta-G solvation = -30268.588047 eV Core-core repulsion = 25829.629329 eV Total energy + Delta-G solvation = -4438.958718 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -50.01134 -47.96893 -41.29244 -39.23282 -38.72027 -37.22616 -36.35509 -34.38071 -32.37479 -31.98054 -29.28639 -27.56936 -27.01398 -26.43275 -24.51654 -23.83955 -23.35477 -22.73166 -21.28658 -20.64242 -18.97716 -18.37435 -18.25170 -17.72558 -17.22427 -17.08127 -16.99758 -16.77272 -16.63448 -16.30390 -16.10160 -15.46559 -15.37639 -15.26063 -14.85624 -14.69441 -14.56127 -14.29385 -14.18735 -13.82425 -13.38222 -13.27455 -13.23281 -13.19094 -13.05668 -13.01692 -12.55786 -12.51110 -12.33299 -12.31770 -12.20343 -11.92195 -11.66992 -11.65026 -11.40481 -11.20640 -10.87501 -10.58281 -10.55723 -10.20814 -8.79845 -7.90189 -5.38721 1.51421 1.52015 1.54150 1.60522 1.95740 2.40687 2.49970 2.78384 3.08519 3.14769 3.22930 3.27060 3.50053 3.55454 3.63703 3.71539 3.88219 3.92197 4.03513 4.08458 4.22820 4.37435 4.47256 4.48891 4.53770 4.55811 4.61764 4.63111 4.73211 4.74360 4.80628 4.85151 4.86546 4.87562 4.97737 5.07216 5.19560 5.27384 5.30802 5.58959 5.65878 6.20618 6.34087 6.46022 7.08501 7.16140 7.75611 8.29187 9.17815 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.010329 B = 0.004008 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2710.166294 B = 6985.003975 C = 8695.028771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.418 6.418 3 C 0.101 3.899 4 C -0.181 4.181 5 C 0.552 3.448 6 O -0.582 6.582 7 N -0.709 5.709 8 C 0.136 3.864 9 C -0.137 4.137 10 H 0.122 0.878 11 C 0.157 3.843 12 N -0.604 5.604 13 C -0.265 4.265 14 H 0.081 0.919 15 C -0.045 4.045 16 N -0.936 5.936 17 Si 0.970 3.030 18 H -0.274 1.274 19 H -0.300 1.300 20 H -0.274 1.274 21 C 0.178 3.822 22 C -0.168 4.168 23 C 0.298 3.702 24 F -0.211 7.211 25 F -0.207 7.207 26 C -0.142 4.142 27 C -0.120 4.120 28 H 0.088 0.912 29 H 0.043 0.957 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.415 0.585 34 H 0.071 0.929 35 H 0.053 0.947 36 H 0.081 0.919 37 H 0.011 0.989 38 H 0.251 0.749 39 H 0.075 0.925 40 H 0.002 0.998 41 H 0.092 0.908 42 H 0.101 0.899 43 H 0.086 0.914 44 H 0.122 0.878 45 H 0.139 0.861 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.889 2.643 -17.314 17.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.338 6.338 3 C 0.025 3.975 4 C -0.185 4.185 5 C 0.339 3.661 6 O -0.461 6.461 7 N -0.361 5.361 8 C 0.011 3.989 9 C -0.158 4.158 10 H 0.140 0.860 11 C 0.031 3.969 12 N -0.327 5.327 13 C -0.395 4.395 14 H 0.098 0.902 15 C -0.241 4.241 16 N -0.581 5.581 17 Si 0.798 3.202 18 H -0.200 1.200 19 H -0.227 1.227 20 H -0.200 1.200 21 C 0.052 3.948 22 C -0.207 4.207 23 C 0.261 3.739 24 F -0.193 7.193 25 F -0.188 7.188 26 C -0.179 4.179 27 C -0.156 4.156 28 H 0.106 0.894 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.109 0.891 33 H 0.252 0.748 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.099 0.901 37 H 0.029 0.971 38 H 0.060 0.940 39 H 0.094 0.906 40 H 0.020 0.980 41 H 0.110 0.890 42 H 0.120 0.880 43 H 0.105 0.895 44 H 0.140 0.860 45 H 0.157 0.843 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 4.331 1.716 -17.186 17.806 hybrid contribution -0.869 0.498 0.975 1.398 sum 3.461 2.214 -16.211 16.723 Atomic orbital electron populations 1.22901 0.79390 1.03566 1.01092 1.87936 1.21398 1.28786 1.95638 1.22057 0.88028 0.84787 1.02641 1.21357 0.94924 1.09405 0.92777 1.19969 0.78065 0.83738 0.84322 1.90664 1.45721 1.23210 1.86545 1.45775 1.55061 1.27620 1.07605 1.21071 0.97927 0.96253 0.83627 1.22765 0.99170 1.01799 0.92051 0.85972 1.20923 0.91103 0.94610 0.90302 1.44302 1.45430 1.35607 1.07352 1.19521 1.17055 1.06331 0.96586 0.90172 1.25858 0.99167 1.01368 0.97704 1.70168 1.47120 1.35634 1.05168 0.85316 0.78487 0.80104 0.76343 1.19994 1.22694 1.19956 1.20556 0.85789 0.98234 0.90252 1.23094 1.01205 1.00036 0.96384 1.21094 0.75561 0.80053 0.97144 1.92954 1.89349 1.42803 1.94150 1.92967 1.34592 1.96725 1.94469 1.23035 1.02040 0.99128 0.93686 1.23284 1.00736 0.92113 0.99510 0.89367 0.93783 0.91868 0.91907 0.89140 0.74834 0.91064 0.92888 0.90078 0.97114 0.93976 0.90629 0.97975 0.88988 0.88021 0.89533 0.85981 0.84287 0.87646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 113.37 1.25 1.72 16 2 O -0.42 -10.30 10.64 -148.98 -1.58 -11.88 16 3 C 0.10 1.86 5.76 71.98 0.41 2.28 16 4 C -0.18 -3.74 2.16 -52.93 -0.11 -3.85 16 5 C 0.55 16.09 7.02 87.66 0.62 16.70 16 6 O -0.58 -22.36 16.71 -3.03 -0.05 -22.41 16 7 N -0.71 -18.67 5.33 -463.06 -2.47 -21.13 16 8 C 0.14 4.17 4.84 86.38 0.42 4.59 16 9 C -0.14 -4.31 2.03 -10.72 -0.02 -4.33 16 10 H 0.12 3.43 8.14 -2.39 -0.02 3.41 16 11 C 0.16 5.94 5.40 86.36 0.47 6.40 16 12 N -0.60 -27.66 2.99 -699.15 -2.09 -29.75 16 13 C -0.27 -13.09 9.58 84.03 0.81 -12.28 16 14 H 0.08 3.69 7.88 -2.91 -0.02 3.66 16 15 C -0.05 -2.32 4.94 84.86 0.42 -1.91 16 16 N -0.94 -52.34 11.16 21.65 0.24 -52.09 16 17 Si 0.97 41.32 29.58 68.60 2.03 43.35 16 18 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 19 H -0.30 -13.23 7.11 99.48 0.71 -12.53 16 20 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 21 C 0.18 8.07 5.09 86.35 0.44 8.51 16 22 C -0.17 -5.95 5.62 30.66 0.17 -5.77 16 23 C 0.30 10.33 1.63 30.62 0.05 10.38 16 24 F -0.21 -8.30 15.73 44.97 0.71 -7.59 16 25 F -0.21 -6.81 16.41 44.97 0.74 -6.07 16 26 C -0.14 -2.51 9.78 30.62 0.30 -2.21 16 27 C -0.12 -1.56 9.92 30.62 0.30 -1.25 16 28 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.04 0.77 8.14 -2.38 -0.02 0.75 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.79 16 31 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.09 1.09 8.09 -2.39 -0.02 1.07 16 33 H 0.41 8.88 7.71 -92.71 -0.71 8.16 16 34 H 0.07 2.22 7.63 -2.39 -0.02 2.20 16 35 H 0.05 1.88 7.97 -2.39 -0.02 1.86 16 36 H 0.08 2.76 7.15 -2.39 -0.02 2.75 16 37 H 0.01 0.46 7.92 -2.39 -0.02 0.44 16 38 H 0.25 13.75 8.31 -92.70 -0.77 12.98 16 39 H 0.08 3.82 6.06 -2.39 -0.01 3.81 16 40 H 0.00 0.11 7.93 -2.39 -0.02 0.09 16 41 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 42 H 0.10 3.32 8.14 -2.38 -0.02 3.30 16 43 H 0.09 1.87 8.00 -2.39 -0.02 1.85 16 44 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.14 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -68.92 380.71 3.31 -65.61 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: 0.27 Total: 23.00 kcal Atomic # 6 Polarization: 13.45 SS G_CDS: 5.52 Total: 18.97 kcal Atomic # 7 Polarization: -98.66 SS G_CDS: -4.32 Total: -102.97 kcal Atomic # 8 Polarization: -32.65 SS G_CDS: -1.64 Total: -34.29 kcal Atomic # 9 Polarization: -15.11 SS G_CDS: 1.45 Total: -13.66 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Total: -68.92 3.31 -65.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278747707.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.268 kcal (2) G-P(sol) polarization free energy of solvation -68.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds