Wall clock time and date at job start Tue Mar 31 2020 17:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.40175 * 120.36188 * 2 1 4 4 N 1.31258 * 120.35845 * 179.97438 * 3 2 1 5 5 C 1.33991 * 120.87776 * 0.02562 * 4 3 2 6 6 N 1.32504 * 132.34130 * 179.97438 * 5 4 3 7 7 C 1.33475 * 109.75389 * 180.02562 * 6 5 4 8 8 C 1.48118 * 125.32287 * 179.97438 * 7 6 5 9 9 O 1.21523 * 120.00143 * 180.02562 * 8 7 6 10 10 N 1.34776 * 120.00260 * 0.02854 * 8 7 6 11 11 C 1.46505 * 120.00191 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.46972 * 325.00176 * 11 10 8 13 13 C 1.52998 * 109.46999 * 84.99592 * 11 10 8 14 14 C 1.52998 * 109.47163 * 204.99963 * 11 10 8 15 15 C 1.52995 * 109.47137 * 64.99690 * 14 11 10 16 16 C 1.53003 * 109.46967 * 179.97438 * 15 14 11 17 17 N 1.46505 * 109.46853 * 180.02562 * 16 15 14 18 18 C 1.36943 * 119.99592 * 180.02562 * 17 16 15 19 19 H 1.07993 * 119.99993 * 0.02562 * 18 17 16 20 20 C 1.38811 * 119.99809 * 179.97438 * 18 17 16 21 21 N 1.31624 * 119.99889 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00168 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47084 * 59.99851 * 22 20 18 24 24 H 1.48497 * 109.47106 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.46785 * 299.99825 * 22 20 18 26 26 N 1.31991 * 109.34965 * 359.97438 * 7 6 5 27 27 N 1.36868 * 120.22536 * 359.97438 * 5 4 3 28 28 C 1.35685 * 120.36899 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.47493 * 270.02053 * 1 2 3 30 30 H 1.08998 * 109.47345 * 30.02250 * 1 2 3 31 31 H 1.09003 * 109.46758 * 150.02342 * 1 2 3 32 32 H 1.07998 * 119.82456 * 359.97438 * 3 2 1 33 33 H 0.97001 * 119.99906 * 359.97438 * 10 8 7 34 34 H 1.09005 * 109.47206 * 60.00326 * 13 11 10 35 35 H 1.09000 * 109.47264 * 179.97438 * 13 11 10 36 36 H 1.08996 * 109.47706 * 300.00561 * 13 11 10 37 37 H 1.09003 * 109.47042 * 185.00205 * 14 11 10 38 38 H 1.09006 * 109.47053 * 304.99949 * 14 11 10 39 39 H 1.08993 * 109.47617 * 300.00068 * 15 14 11 40 40 H 1.09006 * 109.46938 * 60.00189 * 15 14 11 41 41 H 1.08992 * 109.47479 * 300.00088 * 16 15 14 42 42 H 1.08993 * 109.46973 * 60.00696 * 16 15 14 43 43 H 0.97002 * 120.00041 * 0.02562 * 17 16 15 44 44 H 0.97001 * 120.00219 * 179.97438 * 21 20 18 45 45 H 1.08002 * 120.48036 * 0.04554 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2155 1.2095 0.0000 4 7 3.5280 1.2094 0.0005 5 6 4.2156 0.0594 0.0005 6 7 5.5142 -0.2040 0.0005 7 6 5.7066 -1.5249 0.0000 8 6 7.0259 -2.1981 -0.0007 9 8 7.0888 -3.4117 -0.0017 10 7 8.1567 -1.4648 -0.0003 11 6 9.4617 -2.1308 -0.0004 12 1 9.4025 -3.0460 0.5886 13 6 9.8589 -2.4740 -1.4375 14 6 10.5101 -1.1984 0.6097 15 6 10.1801 -0.9549 2.0837 16 6 11.2289 -0.0230 2.6939 17 7 10.9132 0.2096 4.1055 18 6 11.7180 1.0183 4.8628 19 1 12.5852 1.4849 4.4194 20 6 11.4186 1.2392 6.2001 21 7 10.3614 0.6710 6.7404 22 14 12.5160 2.3429 7.2330 23 1 12.5449 3.7050 6.6421 24 1 11.9835 2.4145 8.6174 25 1 13.8924 1.7860 7.2608 26 7 4.5373 -2.1371 0.0002 27 7 3.5542 -1.1388 0.0005 28 6 2.1929 -1.1707 0.0005 29 1 -0.3634 0.0004 1.0277 30 1 -0.3634 0.8898 -0.5142 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6785 2.1465 -0.0004 33 1 8.1066 -0.4961 0.0001 34 1 9.9180 -1.5588 -2.0266 35 1 10.8300 -2.9691 -1.4377 36 1 9.1119 -3.1382 -1.8722 37 1 11.4955 -1.6574 0.5290 38 1 10.5068 -0.2486 0.0749 39 1 9.1948 -0.4960 2.1644 40 1 10.1833 -1.9048 2.6184 41 1 12.2140 -0.4824 2.6133 42 1 11.2260 0.9268 2.1594 43 1 10.1341 -0.2092 4.5037 44 1 10.1524 0.8250 7.6750 45 1 1.6668 -2.1139 0.0002 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283190894.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:36 Heat of formation + Delta-G solvation = 103.657089 kcal Electronic energy + Delta-G solvation = -27129.768139 eV Core-core repulsion = 23185.132205 eV Total energy + Delta-G solvation = -3944.635934 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.36040 -40.19768 -39.12411 -36.78399 -35.20196 -34.81264 -33.64800 -32.53800 -31.23475 -31.13689 -29.37346 -27.93548 -25.93986 -25.59670 -24.41083 -23.34512 -22.87253 -21.09269 -20.71332 -20.56883 -19.16672 -18.47657 -17.50502 -17.16138 -16.94788 -16.47701 -16.09718 -15.18900 -14.75350 -14.63976 -14.56008 -14.27871 -14.10922 -13.83693 -13.73104 -13.45523 -13.15679 -13.02162 -12.98422 -12.93861 -12.70571 -12.21902 -12.19928 -12.04770 -11.27611 -11.14728 -10.79983 -10.76914 -10.73898 -10.56649 -10.48146 -10.39462 -10.28811 -10.08219 -9.97620 -9.62766 -9.23827 -9.19440 -8.79747 -6.84464 -5.69378 -2.97900 -0.16358 0.11188 1.26229 1.43283 2.53098 2.71167 2.90059 3.14781 3.48675 3.52184 3.53877 3.58334 3.70435 4.01793 4.11023 4.36016 4.59676 4.63568 4.78860 4.88079 5.03220 5.04263 5.16559 5.18773 5.31742 5.47059 5.49795 5.54015 5.59497 5.62640 5.63897 5.66049 5.80708 5.98834 6.09978 6.13891 6.25937 6.40154 6.42161 6.48921 6.86704 6.94686 6.98014 7.14446 7.45146 7.75477 7.92670 8.49715 9.60144 10.20067 10.54291 11.53661 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.009918 B = 0.002494 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2822.575645 B =11222.190236 C =13396.378166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.183 4.183 3 C 0.213 3.787 4 N -0.442 5.442 5 C 0.439 3.561 6 N -0.494 5.494 7 C 0.242 3.758 8 C 0.613 3.387 9 O -0.509 6.509 10 N -0.691 5.691 11 C 0.141 3.859 12 H 0.094 0.906 13 C -0.163 4.163 14 C -0.123 4.123 15 C -0.128 4.128 16 C 0.153 3.847 17 N -0.735 5.735 18 C -0.238 4.238 19 H 0.070 0.930 20 C -0.017 4.017 21 N -0.935 5.935 22 Si 0.908 3.092 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 N -0.268 5.268 27 N -0.324 5.324 28 C 0.165 3.835 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.194 0.806 33 H 0.414 0.586 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.017 0.983 42 H 0.018 0.982 43 H 0.383 0.617 44 H 0.255 0.745 45 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.931 -2.860 -20.650 30.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.191 4.191 3 C 0.026 3.974 4 N -0.155 5.155 5 C 0.079 3.921 6 N -0.228 5.228 7 C -0.042 4.042 8 C 0.392 3.608 9 O -0.381 6.381 10 N -0.344 5.344 11 C 0.038 3.962 12 H 0.112 0.888 13 C -0.222 4.222 14 C -0.161 4.161 15 C -0.166 4.166 16 C 0.026 3.974 17 N -0.379 5.379 18 C -0.369 4.369 19 H 0.088 0.912 20 C -0.212 4.212 21 N -0.584 5.584 22 Si 0.739 3.261 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 N -0.102 5.102 27 N -0.104 5.104 28 C 0.029 3.971 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.210 0.790 33 H 0.251 0.749 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.035 0.965 42 H 0.035 0.965 43 H 0.217 0.783 44 H 0.065 0.935 45 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -20.619 -3.571 -20.589 29.356 hybrid contribution -0.494 0.438 0.867 1.090 sum -21.112 -3.133 -19.722 29.060 Atomic orbital electron populations 1.20655 0.86860 1.04355 1.03788 1.20696 0.99483 0.92004 1.06881 1.23674 0.88045 0.99036 0.86691 1.68117 1.08750 1.22252 1.16395 1.22667 0.89304 0.82868 0.97253 1.70849 1.10991 1.13596 1.27364 1.24240 0.95031 0.87785 0.97174 1.16272 0.80842 0.85828 0.77846 1.90850 1.85996 1.12328 1.48906 1.45866 1.04700 1.11261 1.72574 1.21222 0.80788 0.97083 0.97140 0.88794 1.22191 1.02013 1.01964 0.96008 1.21862 0.98131 0.99438 0.96665 1.21759 1.00281 1.00702 0.93875 1.20642 0.95019 0.95285 0.86483 1.42383 1.32192 1.57994 1.05285 1.19207 1.05322 1.20621 0.91792 0.91243 1.24758 0.98302 1.01076 0.97089 1.69663 1.27835 1.47966 1.12908 0.86251 0.79832 0.80471 0.79549 1.21278 1.21722 1.21292 1.78940 0.95122 1.07002 1.29124 1.48994 1.07094 1.08782 1.45539 1.22053 0.79237 1.01713 0.94136 0.89842 0.89811 0.90475 0.78959 0.74881 0.92211 0.91094 0.92220 0.89860 0.91069 0.91916 0.91886 0.96471 0.96461 0.78346 0.93531 0.79783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.02 10.03 36.00 0.36 0.34 16 2 C -0.18 -0.74 5.87 -104.81 -0.61 -1.35 16 3 C 0.21 1.17 10.96 -17.07 -0.19 0.98 16 4 N -0.44 -4.82 10.48 -13.79 -0.14 -4.96 16 5 C 0.44 5.93 8.99 -323.04 -2.90 3.02 16 6 N -0.49 -7.60 10.89 -12.23 -0.13 -7.73 16 7 C 0.24 3.75 7.92 -156.78 -1.24 2.51 16 8 C 0.61 9.49 7.81 -12.21 -0.10 9.39 16 9 O -0.51 -9.02 16.73 5.35 0.09 -8.93 16 10 N -0.69 -9.17 4.53 -54.66 -0.25 -9.42 16 11 C 0.14 1.73 2.57 -67.93 -0.17 1.55 16 12 H 0.09 1.28 7.58 -51.93 -0.39 0.89 16 13 C -0.16 -1.68 9.48 37.16 0.35 -1.33 16 14 C -0.12 -1.53 4.75 -26.73 -0.13 -1.65 16 15 C -0.13 -2.15 5.22 -26.73 -0.14 -2.29 16 16 C 0.15 3.21 6.26 -4.04 -0.03 3.18 16 17 N -0.73 -19.73 5.60 -59.91 -0.34 -20.07 16 18 C -0.24 -6.98 9.99 -15.06 -0.15 -7.13 16 19 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 20 C -0.02 -0.50 5.50 -17.43 -0.10 -0.59 16 21 N -0.93 -29.48 13.06 55.49 0.72 -28.75 16 22 Si 0.91 23.14 29.55 -169.99 -5.02 18.12 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 N -0.27 -4.00 12.78 32.02 0.41 -3.59 16 27 N -0.32 -3.85 3.91 -13.80 -0.05 -3.90 16 28 C 0.17 1.09 10.97 -16.54 -0.18 0.90 16 29 H 0.08 -0.01 8.14 -51.93 -0.42 -0.44 16 30 H 0.08 -0.09 8.10 -51.93 -0.42 -0.52 16 31 H 0.08 -0.04 8.09 -51.93 -0.42 -0.46 16 32 H 0.19 0.21 8.06 -52.49 -0.42 -0.22 16 33 H 0.41 5.23 8.27 -40.82 -0.34 4.89 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.06 1.11 7.75 -51.93 -0.40 0.70 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.38 10.87 7.67 -40.82 -0.31 10.56 16 44 H 0.25 7.75 8.31 -40.82 -0.34 7.41 16 45 H 0.19 0.61 8.06 -52.49 -0.42 0.19 16 LS Contribution 388.16 15.07 5.85 5.85 Total: -1.00 -39.16 388.16 -10.57 -49.73 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -6.48 Total: 6.12 kcal Atomic # 6 Polarization: 12.76 SS G_CDS: -5.22 Total: 7.54 kcal Atomic # 7 Polarization: -78.65 SS G_CDS: 0.22 Total: -78.43 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.09 Total: -8.93 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -5.02 Total: 18.12 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -39.16 -10.57 -49.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283190894.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.390 kcal (2) G-P(sol) polarization free energy of solvation -39.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds