Wall clock time and date at job start Tue Mar 31 2020 17:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.40175 * 120.36188 * 2 1 4 4 N 1.31258 * 120.35845 * 179.97438 * 3 2 1 5 5 C 1.33991 * 120.87776 * 0.02562 * 4 3 2 6 6 N 1.32504 * 132.34130 * 179.97438 * 5 4 3 7 7 C 1.33475 * 109.75389 * 180.02562 * 6 5 4 8 8 C 1.48118 * 125.32287 * 179.97438 * 7 6 5 9 9 O 1.21523 * 120.00143 * 180.02562 * 8 7 6 10 10 N 1.34776 * 120.00260 * 0.02854 * 8 7 6 11 11 C 1.46505 * 120.00191 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.46972 * 325.00176 * 11 10 8 13 13 C 1.52998 * 109.46999 * 84.99592 * 11 10 8 14 14 C 1.52998 * 109.47163 * 204.99963 * 11 10 8 15 15 C 1.52995 * 109.47137 * 64.99690 * 14 11 10 16 16 C 1.53003 * 109.46967 * 179.97438 * 15 14 11 17 17 N 1.46505 * 109.46853 * 180.02562 * 16 15 14 18 18 C 1.36943 * 119.99592 * 180.02562 * 17 16 15 19 19 H 1.07993 * 119.99993 * 0.02562 * 18 17 16 20 20 C 1.38811 * 119.99809 * 179.97438 * 18 17 16 21 21 N 1.31624 * 119.99889 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00168 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47084 * 59.99851 * 22 20 18 24 24 H 1.48497 * 109.47106 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.46785 * 299.99825 * 22 20 18 26 26 N 1.31991 * 109.34965 * 359.97438 * 7 6 5 27 27 N 1.36868 * 120.22536 * 359.97438 * 5 4 3 28 28 C 1.35685 * 120.36899 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.47493 * 270.02053 * 1 2 3 30 30 H 1.08998 * 109.47345 * 30.02250 * 1 2 3 31 31 H 1.09003 * 109.46758 * 150.02342 * 1 2 3 32 32 H 1.07998 * 119.82456 * 359.97438 * 3 2 1 33 33 H 0.97001 * 119.99906 * 359.97438 * 10 8 7 34 34 H 1.09005 * 109.47206 * 60.00326 * 13 11 10 35 35 H 1.09000 * 109.47264 * 179.97438 * 13 11 10 36 36 H 1.08996 * 109.47706 * 300.00561 * 13 11 10 37 37 H 1.09003 * 109.47042 * 185.00205 * 14 11 10 38 38 H 1.09006 * 109.47053 * 304.99949 * 14 11 10 39 39 H 1.08993 * 109.47617 * 300.00068 * 15 14 11 40 40 H 1.09006 * 109.46938 * 60.00189 * 15 14 11 41 41 H 1.08992 * 109.47479 * 300.00088 * 16 15 14 42 42 H 1.08993 * 109.46973 * 60.00696 * 16 15 14 43 43 H 0.97002 * 120.00041 * 0.02562 * 17 16 15 44 44 H 0.97001 * 120.00219 * 179.97438 * 21 20 18 45 45 H 1.08002 * 120.48036 * 0.04554 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2155 1.2095 0.0000 4 7 3.5280 1.2094 0.0005 5 6 4.2156 0.0594 0.0005 6 7 5.5142 -0.2040 0.0005 7 6 5.7066 -1.5249 0.0000 8 6 7.0259 -2.1981 -0.0007 9 8 7.0888 -3.4117 -0.0017 10 7 8.1567 -1.4648 -0.0003 11 6 9.4617 -2.1308 -0.0004 12 1 9.4025 -3.0460 0.5886 13 6 9.8589 -2.4740 -1.4375 14 6 10.5101 -1.1984 0.6097 15 6 10.1801 -0.9549 2.0837 16 6 11.2289 -0.0230 2.6939 17 7 10.9132 0.2096 4.1055 18 6 11.7180 1.0183 4.8628 19 1 12.5852 1.4849 4.4194 20 6 11.4186 1.2392 6.2001 21 7 10.3614 0.6710 6.7404 22 14 12.5160 2.3429 7.2330 23 1 12.5449 3.7050 6.6421 24 1 11.9835 2.4145 8.6174 25 1 13.8924 1.7860 7.2608 26 7 4.5373 -2.1371 0.0002 27 7 3.5542 -1.1388 0.0005 28 6 2.1929 -1.1707 0.0005 29 1 -0.3634 0.0004 1.0277 30 1 -0.3634 0.8898 -0.5142 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6785 2.1465 -0.0004 33 1 8.1066 -0.4961 0.0001 34 1 9.9180 -1.5588 -2.0266 35 1 10.8300 -2.9691 -1.4377 36 1 9.1119 -3.1382 -1.8722 37 1 11.4955 -1.6574 0.5290 38 1 10.5068 -0.2486 0.0749 39 1 9.1948 -0.4960 2.1644 40 1 10.1833 -1.9048 2.6184 41 1 12.2140 -0.4824 2.6133 42 1 11.2260 0.9268 2.1594 43 1 10.1341 -0.2092 4.5037 44 1 10.1524 0.8250 7.6750 45 1 1.6668 -2.1139 0.0002 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283190894.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:33 Heat of formation + Delta-G solvation = 76.766004 kcal Electronic energy + Delta-G solvation = -27130.934224 eV Core-core repulsion = 23185.132205 eV Total energy + Delta-G solvation = -3945.802019 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 5.57 seconds Orbital eigenvalues (eV) -44.19925 -41.23056 -39.93192 -38.05368 -36.59034 -35.90514 -34.42395 -34.04620 -32.61701 -32.13180 -30.91566 -28.46708 -27.25730 -26.53560 -25.36246 -24.61849 -24.02747 -22.47282 -21.97572 -21.65267 -19.96895 -19.22611 -19.13614 -18.43332 -18.04278 -17.48710 -16.79983 -16.63983 -16.26739 -15.90739 -15.49246 -15.39862 -15.17928 -15.10040 -14.64256 -14.45253 -14.39131 -13.91988 -13.79920 -13.64004 -13.46773 -13.22579 -13.07198 -13.04087 -12.92417 -12.74015 -12.41937 -12.30356 -12.11868 -11.90023 -11.83255 -11.73239 -11.56516 -11.51344 -11.15239 -10.93074 -10.89203 -10.30839 -9.93639 -9.01949 -7.96312 -5.26238 -0.81816 -0.60550 0.49358 0.50224 1.45346 1.49972 1.55988 1.57903 1.84692 2.09605 2.22151 2.55322 2.80056 3.17350 3.32181 3.36924 3.60555 3.71241 3.89437 3.93985 4.08794 4.13663 4.25120 4.36564 4.42524 4.56391 4.62757 4.71237 4.79270 4.82655 4.84651 4.86360 4.93274 4.94617 4.97651 5.04325 5.09135 5.26646 5.30605 5.40011 5.41669 5.46111 5.49083 6.03881 6.21417 6.25742 6.49649 6.81193 7.30654 8.08027 8.30298 9.27600 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.009918 B = 0.002494 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2822.575645 B =11222.190236 C =13396.378166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.148 4.148 3 C 0.223 3.777 4 N -0.479 5.479 5 C 0.420 3.580 6 N -0.527 5.527 7 C 0.223 3.777 8 C 0.611 3.389 9 O -0.542 6.542 10 N -0.682 5.682 11 C 0.141 3.859 12 H 0.078 0.922 13 C -0.155 4.155 14 C -0.109 4.109 15 C -0.116 4.116 16 C 0.150 3.850 17 N -0.752 5.752 18 C -0.248 4.248 19 H 0.079 0.921 20 C -0.082 4.082 21 N -0.974 5.974 22 Si 0.980 3.020 23 H -0.275 1.275 24 H -0.295 1.295 25 H -0.275 1.275 26 N -0.298 5.298 27 N -0.324 5.324 28 C 0.135 3.865 29 H 0.097 0.903 30 H 0.108 0.892 31 H 0.091 0.909 32 H 0.243 0.757 33 H 0.417 0.583 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.045 0.955 37 H 0.104 0.896 38 H 0.088 0.912 39 H 0.048 0.952 40 H 0.050 0.950 41 H 0.026 0.974 42 H 0.024 0.976 43 H 0.370 0.630 44 H 0.251 0.749 45 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.321 -1.324 -21.837 31.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.155 4.155 3 C 0.039 3.961 4 N -0.194 5.194 5 C 0.060 3.940 6 N -0.262 5.262 7 C -0.061 4.061 8 C 0.392 3.608 9 O -0.417 6.417 10 N -0.334 5.334 11 C 0.038 3.962 12 H 0.096 0.904 13 C -0.213 4.213 14 C -0.147 4.147 15 C -0.154 4.154 16 C 0.024 3.976 17 N -0.394 5.394 18 C -0.379 4.379 19 H 0.097 0.903 20 C -0.274 4.274 21 N -0.625 5.625 22 Si 0.808 3.192 23 H -0.201 1.201 24 H -0.221 1.221 25 H -0.201 1.201 26 N -0.133 5.133 27 N -0.104 5.104 28 C 0.001 3.999 29 H 0.115 0.885 30 H 0.126 0.874 31 H 0.109 0.891 32 H 0.259 0.741 33 H 0.255 0.745 34 H 0.091 0.909 35 H 0.109 0.891 36 H 0.065 0.935 37 H 0.122 0.878 38 H 0.106 0.894 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.044 0.956 42 H 0.042 0.958 43 H 0.201 0.799 44 H 0.060 0.940 45 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -22.031 -2.002 -21.828 31.078 hybrid contribution -0.341 0.065 1.186 1.236 sum -22.372 -1.937 -20.642 30.502 Atomic orbital electron populations 1.20869 0.83158 1.06331 1.05100 1.21262 1.01438 0.90364 1.02431 1.24703 0.86577 1.01655 0.83132 1.68237 1.11092 1.21205 1.18901 1.22860 0.89300 0.84045 0.97805 1.70691 1.12922 1.13583 1.29025 1.24101 0.95096 0.88174 0.98682 1.16405 0.81466 0.85552 0.77422 1.90807 1.86554 1.13503 1.50805 1.45907 1.04676 1.11338 1.71480 1.21284 0.80173 0.96275 0.98478 0.90409 1.22124 1.02516 1.02498 0.94185 1.21780 0.98988 1.00551 0.93348 1.21623 0.98366 0.98878 0.96573 1.20856 0.96483 0.96435 0.83793 1.42675 1.31549 1.57691 1.07512 1.19675 1.05550 1.20332 0.92382 0.90323 1.25690 1.00024 1.03121 0.98544 1.69844 1.29880 1.49864 1.12919 0.85123 0.78104 0.78755 0.77261 1.20126 1.22120 1.20110 1.78741 0.95636 1.08666 1.30291 1.49025 1.08326 1.07613 1.45463 1.22953 0.77419 1.04340 0.95232 0.88499 0.87351 0.89069 0.74132 0.74514 0.90871 0.89079 0.93541 0.87774 0.89385 0.93305 0.93098 0.95610 0.95783 0.79888 0.94024 0.76930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.42 10.03 71.23 0.71 1.13 16 2 C -0.15 -0.74 5.87 -19.99 -0.12 -0.86 16 3 C 0.22 1.85 10.96 85.25 0.93 2.78 16 4 N -0.48 -10.23 10.48 -197.54 -2.07 -12.30 16 5 C 0.42 11.78 8.99 261.57 2.35 14.13 16 6 N -0.53 -17.35 10.89 -192.62 -2.10 -19.45 16 7 C 0.22 7.50 7.92 137.39 1.09 8.59 16 8 C 0.61 20.38 7.81 86.87 0.68 21.05 16 9 O -0.54 -20.60 16.73 -3.79 -0.06 -20.67 16 10 N -0.68 -18.98 4.53 -445.14 -2.02 -20.99 16 11 C 0.14 3.45 2.57 44.99 0.12 3.57 16 12 H 0.08 2.19 7.58 -2.39 -0.02 2.17 16 13 C -0.16 -3.03 9.48 71.98 0.68 -2.35 16 14 C -0.11 -2.57 4.75 30.59 0.15 -2.43 16 15 C -0.12 -3.95 5.22 30.59 0.16 -3.79 16 16 C 0.15 6.26 6.26 86.38 0.54 6.80 16 17 N -0.75 -41.04 5.60 -343.45 -1.92 -42.97 16 18 C -0.25 -14.56 9.99 84.03 0.84 -13.72 16 19 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 20 C -0.08 -4.94 5.50 84.86 0.47 -4.47 16 21 N -0.97 -62.74 13.06 21.65 0.28 -62.46 16 22 Si 0.98 47.75 29.55 68.60 2.03 49.78 16 23 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 24 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 25 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 26 N -0.30 -9.51 12.78 -52.60 -0.67 -10.19 16 27 N -0.32 -7.94 3.91 -197.58 -0.77 -8.72 16 28 C 0.13 1.60 10.97 83.43 0.92 2.52 16 29 H 0.10 -0.50 8.14 -2.39 -0.02 -0.52 16 30 H 0.11 -0.87 8.10 -2.39 -0.02 -0.89 16 31 H 0.09 -0.52 8.09 -2.39 -0.02 -0.54 16 32 H 0.24 -0.62 8.06 -2.91 -0.02 -0.64 16 33 H 0.42 11.06 8.27 -92.71 -0.77 10.30 16 34 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 35 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 39 H 0.05 1.78 7.75 -2.39 -0.02 1.76 16 40 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 41 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.37 21.74 7.67 -92.71 -0.71 21.03 16 44 H 0.25 15.61 8.31 -92.71 -0.77 14.84 16 45 H 0.21 1.04 8.06 -2.91 -0.02 1.02 16 Total: -1.00 -90.47 388.16 1.76 -88.71 By element: Atomic # 1 Polarization: 26.76 SS G_CDS: -0.45 Total: 26.31 kcal Atomic # 6 Polarization: 23.42 SS G_CDS: 9.51 Total: 32.94 kcal Atomic # 7 Polarization: -167.80 SS G_CDS: -9.27 Total: -177.07 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.06 Total: -20.67 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 2.03 Total: 49.78 kcal Total: -90.47 1.76 -88.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283190894.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.474 kcal (2) G-P(sol) polarization free energy of solvation -90.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.58 seconds