Wall clock time and date at job start Tue Mar 31 2020 18:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46960 * 2 1 4 4 C 1.52994 * 109.47088 * 239.99635 * 2 1 3 5 5 C 1.52999 * 109.46949 * 175.00183 * 4 2 1 6 6 C 1.53010 * 109.47042 * 180.02562 * 5 4 2 7 7 N 1.46497 * 109.46847 * 179.97438 * 6 5 4 8 8 C 1.36939 * 119.99488 * 179.97438 * 7 6 5 9 9 H 1.07997 * 120.00718 * 359.97438 * 8 7 6 10 10 C 1.38822 * 119.99683 * 179.97438 * 8 7 6 11 11 N 1.31620 * 119.99883 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99775 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47038 * 60.00049 * 12 10 8 14 14 H 1.48498 * 109.46886 * 179.97438 * 12 10 8 15 15 H 1.48495 * 109.47282 * 299.99953 * 12 10 8 16 16 N 1.46503 * 109.46959 * 119.99500 * 2 1 3 17 17 C 1.34770 * 120.00076 * 275.00263 * 16 2 1 18 18 O 1.21552 * 120.00149 * 359.97438 * 17 16 2 19 19 C 1.47873 * 120.00193 * 180.02562 * 17 16 2 20 20 C 1.39453 * 121.11216 * 359.97438 * 19 17 16 21 21 C 1.38625 * 119.37407 * 180.02562 * 20 19 17 22 22 N 1.31585 * 121.63767 * 0.02562 * 21 20 19 23 23 C 1.32204 * 121.86410 * 359.97438 * 22 21 20 24 24 C 1.40866 * 121.12027 * 179.97438 * 19 17 16 25 25 N 1.34394 * 135.14103 * 0.02562 * 24 19 17 26 26 N 1.28696 * 109.15109 * 179.97438 * 25 24 19 27 27 N 1.28778 * 111.75729 * 0.02562 * 26 25 24 28 28 C 1.46499 * 125.87077 * 180.02562 * 27 26 25 29 29 H 1.08995 * 109.47177 * 300.00396 * 1 2 3 30 30 H 1.08997 * 109.47197 * 60.00537 * 1 2 3 31 31 H 1.08995 * 109.47157 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47194 * 294.99966 * 4 2 1 33 33 H 1.09003 * 109.47334 * 55.00292 * 4 2 1 34 34 H 1.08999 * 109.47172 * 299.99607 * 5 4 2 35 35 H 1.08994 * 109.47577 * 59.99863 * 5 4 2 36 36 H 1.08999 * 109.46609 * 299.99698 * 6 5 4 37 37 H 1.08994 * 109.47254 * 59.99411 * 6 5 4 38 38 H 0.96997 * 120.00276 * 0.02562 * 7 6 5 39 39 H 0.96999 * 119.99879 * 179.97438 * 11 10 8 40 40 H 0.97003 * 119.99483 * 94.99917 * 16 2 1 41 41 H 1.08002 * 120.31740 * 0.26965 * 20 19 17 42 42 H 1.08001 * 119.17733 * 179.97438 * 21 20 19 43 43 H 1.08991 * 109.47430 * 269.98347 * 28 27 26 44 44 H 1.09001 * 109.46459 * 29.97956 * 28 27 26 45 45 H 1.09002 * 109.47247 * 149.97502 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5648 -0.6134 -1.3135 6 6 4.0748 -1.3342 -2.5632 7 7 5.5348 -1.2303 -2.6251 8 6 6.2185 -1.8045 -3.6634 9 1 5.6817 -2.3343 -4.4363 10 6 7.6020 -1.7056 -3.7224 11 7 8.2563 -1.0595 -2.7807 12 14 8.5346 -2.4883 -5.1390 13 1 8.0775 -1.8942 -6.4209 14 1 9.9892 -2.2413 -4.9705 15 1 8.2787 -3.9510 -5.1522 16 7 2.0183 -0.6905 1.1963 17 6 2.1470 -0.0181 2.3571 18 8 1.8583 1.1614 2.4116 19 6 2.6404 -0.7149 3.5645 20 6 2.9787 -2.0673 3.5282 21 6 3.4371 -2.6847 4.6816 22 7 3.5615 -2.0264 5.8142 23 6 3.2572 -0.7436 5.9128 24 6 2.7844 -0.0350 4.7897 25 7 2.5704 1.2227 5.2122 26 7 2.8735 1.3062 6.4602 27 7 3.2857 0.1794 6.9277 28 6 3.7093 -0.0743 8.3070 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.7516 -1.7716 -1.2054 33 1 1.6054 -0.2618 -2.1370 34 1 3.8532 0.4369 -1.3573 35 1 3.9995 -1.0728 -0.4259 36 1 3.7864 -2.3844 -2.5198 37 1 3.6402 -0.8744 -3.4507 38 1 6.0172 -0.7554 -1.9303 39 1 9.2230 -0.9907 -2.8217 40 1 2.2490 -1.6317 1.1527 41 1 2.8883 -2.6275 2.6093 42 1 3.6979 -3.7323 4.6501 43 1 4.7793 0.1115 8.3985 44 1 3.1665 0.5881 8.9813 45 1 3.4969 -1.1113 8.5674 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283229624.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:25 Heat of formation + Delta-G solvation = 103.860953 kcal Electronic energy + Delta-G solvation = -27529.125932 eV Core-core repulsion = 23584.498838 eV Total energy + Delta-G solvation = -3944.627093 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.67519 -40.30522 -39.01408 -36.82147 -35.34342 -34.85836 -33.28293 -32.27462 -31.18548 -30.83014 -29.37207 -28.33580 -26.04821 -25.59471 -24.07132 -23.40353 -22.68550 -20.98056 -20.76622 -20.59366 -19.22686 -18.09558 -17.79712 -17.32005 -17.01462 -16.31721 -15.69003 -15.18934 -15.07616 -14.68479 -14.61150 -14.21417 -14.07400 -13.77247 -13.61705 -13.49579 -13.35922 -13.11717 -13.00042 -12.71343 -12.55400 -12.21089 -12.11209 -11.82847 -11.44269 -11.30878 -11.16223 -10.84828 -10.81151 -10.52148 -10.45880 -10.37322 -10.03455 -9.78445 -9.68224 -9.59179 -9.34007 -9.13556 -8.85816 -6.91142 -5.75364 -3.04226 -0.28122 0.51607 1.54913 1.90226 2.59680 2.80058 3.27922 3.35729 3.44107 3.48314 3.49715 3.85997 3.97368 4.14524 4.23099 4.52254 4.56847 4.57916 4.74858 4.84075 4.87996 5.01533 5.12689 5.13979 5.21267 5.39160 5.41461 5.54470 5.57911 5.62299 5.76197 5.77589 5.94721 5.99032 6.06527 6.09334 6.19477 6.35275 6.40368 6.41314 6.86452 6.89673 7.11178 7.30593 7.69765 7.91286 8.02742 8.43658 9.54291 10.13513 10.47603 11.47500 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.012334 B = 0.002455 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.611649 B =11400.935675 C =12788.689943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.142 3.858 3 H 0.092 0.908 4 C -0.123 4.123 5 C -0.127 4.127 6 C 0.153 3.847 7 N -0.735 5.735 8 C -0.240 4.240 9 H 0.069 0.931 10 C -0.015 4.015 11 N -0.934 5.934 12 Si 0.908 3.092 13 H -0.286 1.286 14 H -0.291 1.291 15 H -0.286 1.286 16 N -0.712 5.712 17 C 0.553 3.447 18 O -0.501 6.501 19 C -0.009 4.009 20 C -0.139 4.139 21 C 0.160 3.840 22 N -0.457 5.457 23 C 0.209 3.791 24 C 0.003 3.997 25 N -0.215 5.215 26 N -0.006 5.006 27 N -0.311 5.311 28 C 0.091 3.909 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.017 0.983 37 H 0.017 0.983 38 H 0.383 0.617 39 H 0.256 0.744 40 H 0.400 0.600 41 H 0.159 0.841 42 H 0.184 0.816 43 H 0.092 0.908 44 H 0.104 0.896 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.562 -4.008 20.813 26.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.038 3.962 3 H 0.110 0.890 4 C -0.161 4.161 5 C -0.165 4.165 6 C 0.025 3.975 7 N -0.379 5.379 8 C -0.372 4.372 9 H 0.087 0.913 10 C -0.211 4.211 11 N -0.583 5.583 12 Si 0.739 3.261 13 H -0.213 1.213 14 H -0.217 1.217 15 H -0.213 1.213 16 N -0.365 5.365 17 C 0.337 3.663 18 O -0.375 6.375 19 C -0.026 4.026 20 C -0.163 4.163 21 C -0.013 4.013 22 N -0.170 5.170 23 C -0.033 4.033 24 C -0.126 4.126 25 N -0.089 5.089 26 N 0.012 4.988 27 N -0.112 5.112 28 C -0.050 4.050 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.034 0.966 37 H 0.035 0.965 38 H 0.217 0.783 39 H 0.065 0.935 40 H 0.236 0.764 41 H 0.177 0.823 42 H 0.200 0.800 43 H 0.110 0.890 44 H 0.122 0.878 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -15.712 -2.056 21.900 27.031 hybrid contribution 0.982 -1.474 -1.296 2.195 sum -14.730 -3.530 20.604 25.572 Atomic orbital electron populations 1.22177 0.95207 1.02086 1.02628 1.21115 0.93744 0.97960 0.83371 0.88982 1.21860 0.96911 1.00788 0.96540 1.21748 0.93599 1.01604 0.99513 1.20647 0.86195 0.96407 0.94212 1.42378 1.00208 1.66266 1.29019 1.19196 0.89435 1.27169 1.01356 0.91261 1.24759 0.96478 1.01223 0.98646 1.69655 1.07276 1.46872 1.34464 0.86260 0.78986 0.78936 0.81963 1.21266 1.21688 1.21273 1.45981 1.67083 1.14102 1.09373 1.17860 0.78945 0.86773 0.82679 1.90875 1.47765 1.14566 1.84269 1.19679 0.97988 0.93126 0.91797 1.22441 0.99093 0.93462 1.01276 1.22852 0.92758 1.00070 0.85574 1.66273 1.16482 1.05093 1.29165 1.19797 1.03871 0.91297 0.88357 1.20111 1.05084 0.92677 0.94747 1.75569 1.16894 1.15894 1.00523 1.78274 1.09166 1.05033 1.06278 1.47042 1.47705 1.05592 1.10864 1.22298 1.02416 1.04826 0.75427 0.92222 0.91343 0.92449 0.91311 0.90056 0.91866 0.92084 0.96564 0.96495 0.78333 0.93467 0.76450 0.82317 0.79954 0.88963 0.87754 0.87909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 9.48 37.16 0.35 -1.20 16 2 C 0.14 1.56 2.57 -67.93 -0.17 1.39 16 3 H 0.09 1.22 7.58 -51.93 -0.39 0.83 16 4 C -0.12 -1.35 4.75 -26.73 -0.13 -1.48 16 5 C -0.13 -1.93 5.22 -26.73 -0.14 -2.07 16 6 C 0.15 2.99 6.26 -4.04 -0.03 2.96 16 7 N -0.73 -18.78 5.60 -59.91 -0.34 -19.11 16 8 C -0.24 -6.78 9.99 -15.05 -0.15 -6.93 16 9 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 10 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 11 N -0.93 -28.57 13.06 55.49 0.72 -27.85 16 12 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 14 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 16 N -0.71 -7.47 4.49 -54.74 -0.25 -7.72 16 17 C 0.55 7.41 7.76 -12.32 -0.10 7.32 16 18 O -0.50 -8.73 15.93 5.32 0.08 -8.65 16 19 C -0.01 -0.11 5.92 -104.51 -0.62 -0.73 16 20 C -0.14 -1.07 9.61 -38.99 -0.37 -1.45 16 21 C 0.16 1.15 11.14 -17.51 -0.20 0.95 16 22 N -0.46 -4.50 10.35 -12.38 -0.13 -4.63 16 23 C 0.21 2.47 8.08 -156.20 -1.26 1.21 16 24 C 0.00 0.05 6.97 -84.72 -0.59 -0.54 16 25 N -0.21 -3.40 11.92 32.23 0.38 -3.02 16 26 N -0.01 -0.08 13.07 60.35 0.79 0.71 16 27 N -0.31 -3.29 3.80 -67.23 -0.26 -3.54 16 28 C 0.09 0.45 11.41 59.85 0.68 1.13 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.06 0.92 7.75 -51.93 -0.40 0.52 16 36 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.38 10.36 7.67 -40.82 -0.31 10.05 16 39 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 40 H 0.40 3.08 6.75 -40.82 -0.28 2.81 16 41 H 0.16 0.68 6.53 -52.49 -0.34 0.33 16 42 H 0.18 0.56 8.06 -52.49 -0.42 0.14 16 43 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 383.80 15.07 5.78 5.78 Total: -1.00 -38.39 383.80 -7.38 -45.77 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -6.35 Total: 4.78 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -2.82 Total: 0.02 kcal Atomic # 7 Polarization: -66.08 SS G_CDS: 0.93 Total: -65.15 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.08 Total: -8.65 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -38.39 -7.38 -45.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283229624.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.633 kcal (2) G-P(sol) polarization free energy of solvation -38.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds