Wall clock time and date at job start Tue Mar 31 2020 18:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46960 * 2 1 4 4 C 1.52994 * 109.47088 * 239.99635 * 2 1 3 5 5 C 1.52999 * 109.46949 * 175.00183 * 4 2 1 6 6 C 1.53010 * 109.47042 * 180.02562 * 5 4 2 7 7 N 1.46497 * 109.46847 * 179.97438 * 6 5 4 8 8 C 1.36939 * 119.99488 * 179.97438 * 7 6 5 9 9 H 1.07997 * 120.00718 * 359.97438 * 8 7 6 10 10 C 1.38822 * 119.99683 * 179.97438 * 8 7 6 11 11 N 1.31620 * 119.99883 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99775 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47038 * 60.00049 * 12 10 8 14 14 H 1.48498 * 109.46886 * 179.97438 * 12 10 8 15 15 H 1.48495 * 109.47282 * 299.99953 * 12 10 8 16 16 N 1.46503 * 109.46959 * 119.99500 * 2 1 3 17 17 C 1.34770 * 120.00076 * 275.00263 * 16 2 1 18 18 O 1.21552 * 120.00149 * 359.97438 * 17 16 2 19 19 C 1.47873 * 120.00193 * 180.02562 * 17 16 2 20 20 C 1.39453 * 121.11216 * 359.97438 * 19 17 16 21 21 C 1.38625 * 119.37407 * 180.02562 * 20 19 17 22 22 N 1.31585 * 121.63767 * 0.02562 * 21 20 19 23 23 C 1.32204 * 121.86410 * 359.97438 * 22 21 20 24 24 C 1.40866 * 121.12027 * 179.97438 * 19 17 16 25 25 N 1.34394 * 135.14103 * 0.02562 * 24 19 17 26 26 N 1.28696 * 109.15109 * 179.97438 * 25 24 19 27 27 N 1.28778 * 111.75729 * 0.02562 * 26 25 24 28 28 C 1.46499 * 125.87077 * 180.02562 * 27 26 25 29 29 H 1.08995 * 109.47177 * 300.00396 * 1 2 3 30 30 H 1.08997 * 109.47197 * 60.00537 * 1 2 3 31 31 H 1.08995 * 109.47157 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47194 * 294.99966 * 4 2 1 33 33 H 1.09003 * 109.47334 * 55.00292 * 4 2 1 34 34 H 1.08999 * 109.47172 * 299.99607 * 5 4 2 35 35 H 1.08994 * 109.47577 * 59.99863 * 5 4 2 36 36 H 1.08999 * 109.46609 * 299.99698 * 6 5 4 37 37 H 1.08994 * 109.47254 * 59.99411 * 6 5 4 38 38 H 0.96997 * 120.00276 * 0.02562 * 7 6 5 39 39 H 0.96999 * 119.99879 * 179.97438 * 11 10 8 40 40 H 0.97003 * 119.99483 * 94.99917 * 16 2 1 41 41 H 1.08002 * 120.31740 * 0.26965 * 20 19 17 42 42 H 1.08001 * 119.17733 * 179.97438 * 21 20 19 43 43 H 1.08991 * 109.47430 * 269.98347 * 28 27 26 44 44 H 1.09001 * 109.46459 * 29.97956 * 28 27 26 45 45 H 1.09002 * 109.47247 * 149.97502 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5648 -0.6134 -1.3135 6 6 4.0748 -1.3342 -2.5632 7 7 5.5348 -1.2303 -2.6251 8 6 6.2185 -1.8045 -3.6634 9 1 5.6817 -2.3343 -4.4363 10 6 7.6020 -1.7056 -3.7224 11 7 8.2563 -1.0595 -2.7807 12 14 8.5346 -2.4883 -5.1390 13 1 8.0775 -1.8942 -6.4209 14 1 9.9892 -2.2413 -4.9705 15 1 8.2787 -3.9510 -5.1522 16 7 2.0183 -0.6905 1.1963 17 6 2.1470 -0.0181 2.3571 18 8 1.8583 1.1614 2.4116 19 6 2.6404 -0.7149 3.5645 20 6 2.9787 -2.0673 3.5282 21 6 3.4371 -2.6847 4.6816 22 7 3.5615 -2.0264 5.8142 23 6 3.2572 -0.7436 5.9128 24 6 2.7844 -0.0350 4.7897 25 7 2.5704 1.2227 5.2122 26 7 2.8735 1.3062 6.4602 27 7 3.2857 0.1794 6.9277 28 6 3.7093 -0.0743 8.3070 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.7516 -1.7716 -1.2054 33 1 1.6054 -0.2618 -2.1370 34 1 3.8532 0.4369 -1.3573 35 1 3.9995 -1.0728 -0.4259 36 1 3.7864 -2.3844 -2.5198 37 1 3.6402 -0.8744 -3.4507 38 1 6.0172 -0.7554 -1.9303 39 1 9.2230 -0.9907 -2.8217 40 1 2.2490 -1.6317 1.1527 41 1 2.8883 -2.6275 2.6093 42 1 3.6979 -3.7323 4.6501 43 1 4.7793 0.1115 8.3985 44 1 3.1665 0.5881 8.9813 45 1 3.4969 -1.1113 8.5674 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283229624.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:24 Heat of formation + Delta-G solvation = 74.750804 kcal Electronic energy + Delta-G solvation = -27530.388242 eV Core-core repulsion = 23584.498838 eV Total energy + Delta-G solvation = -3945.889404 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.50156 -41.22664 -39.81545 -37.96910 -36.52724 -36.10164 -34.40821 -33.65906 -32.20558 -31.87747 -30.73362 -28.93556 -27.23378 -26.73647 -24.96765 -24.71997 -23.88475 -22.34673 -21.77432 -21.48223 -20.01940 -19.11004 -18.86099 -18.60928 -18.12190 -17.25530 -16.69197 -16.40407 -16.13596 -15.90487 -15.65043 -15.35036 -15.26536 -15.07534 -14.70951 -14.40368 -14.17615 -14.08569 -13.85895 -13.68648 -13.43827 -13.39713 -13.16300 -12.99842 -12.71814 -12.62567 -12.37011 -12.26940 -12.17335 -12.05008 -11.82791 -11.70660 -11.47501 -11.39153 -10.89592 -10.63524 -10.35377 -10.25266 -10.00387 -8.97896 -7.93625 -5.22673 -1.07857 -0.20245 0.89158 0.97522 1.48407 1.51843 1.57975 1.72661 1.92038 2.53366 2.57765 2.58435 3.14675 3.19780 3.40041 3.40162 3.61760 3.66983 3.96858 4.04507 4.14879 4.22658 4.23659 4.31549 4.36387 4.44479 4.53670 4.57668 4.62469 4.69711 4.74869 4.86491 4.90711 4.95506 5.03672 5.08641 5.16478 5.34414 5.35153 5.38713 5.46897 5.53773 5.56337 6.28770 6.39970 6.45627 7.03294 7.12612 7.34337 8.12746 8.33857 9.29984 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.012334 B = 0.002455 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.611649 B =11400.935675 C =12788.689943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.144 3.856 3 H 0.061 0.939 4 C -0.107 4.107 5 C -0.115 4.115 6 C 0.150 3.850 7 N -0.751 5.751 8 C -0.245 4.245 9 H 0.078 0.922 10 C -0.080 4.080 11 N -0.973 5.973 12 Si 0.975 3.025 13 H -0.279 1.279 14 H -0.297 1.297 15 H -0.273 1.273 16 N -0.697 5.697 17 C 0.551 3.449 18 O -0.556 6.556 19 C -0.044 4.044 20 C -0.109 4.109 21 C 0.171 3.829 22 N -0.459 5.459 23 C 0.195 3.805 24 C -0.028 4.028 25 N -0.269 5.269 26 N -0.026 5.026 27 N -0.299 5.299 28 C 0.078 3.922 29 H 0.038 0.962 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.040 0.960 35 H 0.062 0.938 36 H 0.032 0.968 37 H 0.017 0.983 38 H 0.371 0.629 39 H 0.250 0.750 40 H 0.416 0.584 41 H 0.200 0.800 42 H 0.235 0.765 43 H 0.107 0.893 44 H 0.123 0.877 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.193 -7.686 20.371 27.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.040 3.960 3 H 0.080 0.920 4 C -0.145 4.145 5 C -0.153 4.153 6 C 0.024 3.976 7 N -0.394 5.394 8 C -0.377 4.377 9 H 0.096 0.904 10 C -0.272 4.272 11 N -0.624 5.624 12 Si 0.804 3.196 13 H -0.205 1.205 14 H -0.224 1.224 15 H -0.199 1.199 16 N -0.350 5.350 17 C 0.337 3.663 18 O -0.433 6.433 19 C -0.060 4.060 20 C -0.132 4.132 21 C -0.003 4.003 22 N -0.173 5.173 23 C -0.047 4.047 24 C -0.159 4.159 25 N -0.142 5.142 26 N -0.007 5.007 27 N -0.101 5.101 28 C -0.060 4.060 29 H 0.057 0.943 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.116 0.884 33 H 0.109 0.891 34 H 0.059 0.941 35 H 0.081 0.919 36 H 0.050 0.950 37 H 0.035 0.965 38 H 0.202 0.798 39 H 0.059 0.941 40 H 0.255 0.745 41 H 0.217 0.783 42 H 0.251 0.749 43 H 0.125 0.875 44 H 0.141 0.859 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -16.393 -5.758 21.460 27.612 hybrid contribution 1.161 -0.458 -1.137 1.688 sum -15.232 -6.216 20.323 26.147 Atomic orbital electron populations 1.22101 0.93602 1.03391 1.02201 1.21036 0.94896 0.96569 0.83530 0.92041 1.21756 0.93425 1.02649 0.96715 1.21621 0.96578 0.99565 0.97556 1.20872 0.82989 0.97674 0.96084 1.42668 1.02665 1.65912 1.28121 1.19650 0.89961 1.26248 1.01829 0.90373 1.25623 0.97613 1.02524 1.01413 1.69825 1.07053 1.48881 1.36600 0.85187 0.76972 0.78543 0.78936 1.20506 1.22378 1.19900 1.45859 1.66066 1.14697 1.08402 1.18190 0.78173 0.86289 0.83679 1.90841 1.50364 1.16957 1.85168 1.19764 1.00699 0.94863 0.90683 1.22976 0.95604 0.91529 1.03112 1.23830 0.90362 1.01772 0.84300 1.66446 1.16579 1.03868 1.30400 1.19985 1.04544 0.92036 0.88085 1.20545 1.06298 0.92554 0.96454 1.75458 1.19185 1.17861 1.01736 1.78140 1.10293 1.06335 1.05953 1.47478 1.45800 1.04693 1.12141 1.22778 1.03595 1.06464 0.73180 0.94282 0.90214 0.90173 0.88399 0.89063 0.94113 0.91929 0.94999 0.96467 0.79790 0.94089 0.74515 0.78320 0.74895 0.87460 0.85880 0.86123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 9.48 71.98 0.68 -2.03 16 2 C 0.14 3.02 2.57 44.99 0.12 3.14 16 3 H 0.06 1.70 7.58 -2.39 -0.02 1.69 16 4 C -0.11 -2.08 4.75 30.59 0.15 -1.93 16 5 C -0.12 -3.35 5.22 30.60 0.16 -3.19 16 6 C 0.15 5.59 6.26 86.38 0.54 6.13 16 7 N -0.75 -38.05 5.60 -343.44 -1.92 -39.97 16 8 C -0.25 -13.62 9.99 84.04 0.84 -12.78 16 9 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 10 C -0.08 -4.59 5.50 84.86 0.47 -4.13 16 11 N -0.97 -60.13 13.06 21.65 0.28 -59.85 16 12 Si 0.98 45.82 29.55 68.60 2.03 47.85 16 13 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 14 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 15 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 16 N -0.70 -13.75 4.49 -445.38 -2.00 -15.74 16 17 C 0.55 15.17 7.76 86.80 0.67 15.84 16 18 O -0.56 -20.91 15.93 -3.88 -0.06 -20.97 16 19 C -0.04 -1.04 5.92 -19.79 -0.12 -1.16 16 20 C -0.11 -1.35 9.61 22.66 0.22 -1.13 16 21 C 0.17 1.79 11.14 84.82 0.94 2.74 16 22 N -0.46 -8.04 10.35 -193.09 -2.00 -10.04 16 23 C 0.20 4.59 8.08 134.17 1.08 5.67 16 24 C -0.03 -0.81 6.97 40.06 0.28 -0.53 16 25 N -0.27 -9.28 11.92 -51.93 -0.62 -9.90 16 26 N -0.03 -0.74 13.07 37.02 0.48 -0.26 16 27 N -0.30 -6.44 3.80 -366.61 -1.39 -7.83 16 28 C 0.08 0.71 11.41 127.77 1.46 2.16 16 29 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.10 1.40 8.14 -2.38 -0.02 1.39 16 33 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.06 1.79 7.75 -2.39 -0.02 1.77 16 36 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.37 20.29 7.67 -92.71 -0.71 19.58 16 39 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 40 H 0.42 5.09 6.75 -92.71 -0.63 4.46 16 41 H 0.20 0.69 6.53 -2.91 -0.02 0.67 16 42 H 0.23 0.00 8.06 -2.91 -0.02 -0.03 16 43 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 45 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -89.17 383.80 1.99 -87.18 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: -0.30 Total: 20.75 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: 7.49 Total: 8.78 kcal Atomic # 7 Polarization: -136.43 SS G_CDS: -7.17 Total: -143.59 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -0.06 Total: -20.97 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -89.17 1.99 -87.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283229624.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.933 kcal (2) G-P(sol) polarization free energy of solvation -89.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds