Wall clock time and date at job start Tue Mar 31 2020 16:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34772 * 119.99893 * 2 1 4 4 O 1.21284 * 119.99893 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.00350 * 0.02562 * 3 2 1 6 6 C 1.50702 * 109.47218 * 180.02562 * 5 3 2 7 7 C 1.32576 * 119.99987 * 127.31195 * 6 5 3 8 8 C 1.47799 * 120.00305 * 8.42060 * 7 6 5 9 9 C 1.39547 * 120.11730 * 220.85641 * 8 7 6 10 10 C 1.37926 * 119.88168 * 179.76798 * 9 8 7 11 11 C 1.38581 * 120.11380 * 0.53260 * 10 9 8 12 12 F 1.35096 * 119.88063 * 179.71942 * 11 10 9 13 13 C 1.38569 * 120.23419 * 359.69626 * 11 10 9 14 14 C 1.37928 * 120.11691 * 0.04878 * 13 11 10 15 15 C 1.46496 * 119.99771 * 180.02562 * 2 1 3 16 16 C 1.53786 * 113.61612 * 37.49881 * 15 2 1 17 17 C 1.53782 * 87.08126 * 220.01731 * 16 15 2 18 18 N 1.46497 * 113.69030 * 139.98878 * 17 16 15 19 19 C 1.36936 * 119.99908 * 107.46305 * 18 17 16 20 20 H 1.07997 * 120.00069 * 0.02562 * 19 18 17 21 21 C 1.38808 * 120.00165 * 179.97438 * 19 18 17 22 22 N 1.31626 * 119.99877 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00112 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47254 * 90.00064 * 23 21 19 25 25 H 1.48505 * 109.47052 * 209.99957 * 23 21 19 26 26 H 1.48500 * 109.47237 * 330.00181 * 23 21 19 27 27 C 1.53773 * 113.61578 * 299.99995 * 15 2 1 28 28 H 1.08997 * 109.47406 * 89.99396 * 1 2 3 29 29 H 1.08995 * 109.46856 * 210.00113 * 1 2 3 30 30 H 1.09003 * 109.46734 * 330.00224 * 1 2 3 31 31 H 1.08999 * 109.47088 * 59.99861 * 5 3 2 32 32 H 1.09005 * 109.46928 * 299.99932 * 5 3 2 33 33 H 1.07995 * 120.00054 * 307.30476 * 6 5 3 34 34 H 1.08006 * 119.99524 * 188.15193 * 7 6 5 35 35 H 1.08001 * 120.05590 * 0.02562 * 9 8 7 36 36 H 1.07993 * 119.94210 * 180.23041 * 10 9 8 37 37 H 1.07999 * 119.94097 * 180.02562 * 13 11 10 38 38 H 1.08001 * 120.05690 * 180.02562 * 14 13 11 39 39 H 1.09000 * 112.84611 * 168.79872 * 15 2 1 40 40 H 1.09008 * 113.61091 * 334.56696 * 16 15 2 41 41 H 1.08997 * 113.61526 * 105.46168 * 16 15 2 42 42 H 1.08996 * 113.61006 * 270.88377 * 17 16 15 43 43 H 0.97004 * 120.00113 * 287.46092 * 18 17 16 44 44 H 0.96992 * 119.99867 * 179.97438 * 22 21 19 45 45 H 1.09007 * 113.61508 * 254.52948 * 27 15 2 46 46 H 1.08993 * 113.61837 * 25.43085 * 27 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 0.0006 6 6 2.3648 3.6177 -0.0002 7 6 2.2659 4.5738 -0.9133 8 6 1.0929 4.6196 -1.8113 9 6 1.2570 4.9282 -3.1623 10 6 0.1596 4.9649 -3.9970 11 6 -1.1056 4.7069 -3.4939 12 9 -2.1779 4.7497 -4.3145 13 6 -1.2746 4.4046 -2.1522 14 6 -0.1833 4.3601 -1.3099 15 6 2.1975 -1.2687 -0.0006 16 6 1.5373 -2.3608 -0.8588 17 6 1.9129 -3.3527 0.2548 18 7 0.8728 -4.3460 0.5336 19 6 1.0473 -5.6475 0.1454 20 1 1.9519 -5.9418 -0.3660 21 6 0.0621 -6.5888 0.4101 22 7 -1.0401 -6.2302 1.0338 23 14 0.3005 -8.3644 -0.1188 24 1 0.9672 -9.1205 0.9716 25 1 -1.0212 -8.9762 -0.4091 26 1 1.1451 -8.4082 -1.3395 27 6 1.8953 -2.1550 1.2192 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 0.7591 2.5299 0.8908 32 1 0.7584 2.5302 -0.8892 33 1 3.1471 3.6598 0.7431 34 1 3.0404 5.3218 -0.9980 35 1 2.2421 5.1339 -3.5544 36 1 0.2859 5.2000 -5.0435 37 1 -2.2627 4.2039 -1.7652 38 1 -0.3161 4.1241 -0.2644 39 1 3.2624 -1.1425 -0.1956 40 1 0.4623 -2.2290 -0.9819 41 1 2.0526 -2.5466 -1.8012 42 1 2.9000 -3.7973 0.1287 43 1 0.0605 -4.0817 0.9933 44 1 -1.7287 -6.8879 1.2184 45 1 2.6998 -2.1748 1.9546 46 1 0.9183 -1.9670 1.6643 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284774649.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:03 Heat of formation + Delta-G solvation = -0.089337 kcal Electronic energy + Delta-G solvation = -27357.076799 eV Core-core repulsion = 23355.729370 eV Total energy + Delta-G solvation = -4001.347429 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.20361 -40.33446 -39.52351 -38.06534 -35.21156 -34.79418 -33.11883 -31.65828 -30.54654 -29.90057 -27.95311 -26.99367 -25.14917 -24.48670 -23.45089 -23.10855 -22.19454 -19.88890 -19.24149 -18.78188 -17.88154 -17.18086 -17.11829 -16.77346 -16.19249 -16.01223 -15.84640 -15.78045 -14.87075 -14.60457 -14.37785 -14.28465 -13.99503 -13.62572 -13.57538 -13.23246 -13.03389 -13.01435 -12.83138 -12.42680 -12.33920 -12.21365 -11.92799 -11.78443 -11.41979 -11.35942 -11.25004 -10.92038 -10.58615 -10.48401 -10.28826 -10.07316 -9.99929 -9.74763 -9.55689 -9.45820 -8.92090 -8.50174 -8.44655 -7.01306 -5.82612 -3.11455 0.50947 0.83334 1.91428 2.64422 3.10080 3.27280 3.40891 3.46586 3.47836 3.89947 4.32523 4.34430 4.47603 4.51781 4.56212 4.61998 4.82859 4.95247 5.01377 5.05342 5.10517 5.19453 5.22491 5.37509 5.41735 5.43220 5.51443 5.55159 5.61696 5.72745 5.73612 5.77498 5.84154 5.94648 5.97862 6.13204 6.23102 6.26726 6.32078 6.37624 6.43903 6.50845 6.54888 6.78708 7.01696 7.51513 7.66686 8.21388 8.35978 9.47367 10.03786 10.38486 11.39811 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015369 B = 0.002227 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.421332 B =12571.222419 C =13731.225599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.599 5.599 3 C 0.515 3.485 4 O -0.545 6.545 5 C -0.129 4.129 6 C -0.102 4.102 7 C -0.134 4.134 8 C -0.062 4.062 9 C -0.081 4.081 10 C -0.152 4.152 11 C 0.095 3.905 12 F -0.140 7.140 13 C -0.152 4.152 14 C -0.087 4.087 15 C 0.116 3.884 16 C -0.175 4.175 17 C 0.170 3.830 18 N -0.710 5.710 19 C -0.244 4.244 20 H 0.072 0.928 21 C -0.013 4.013 22 N -0.933 5.933 23 Si 0.908 3.092 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 C -0.162 4.162 28 H 0.057 0.943 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.104 0.896 32 H 0.107 0.893 33 H 0.126 0.874 34 H 0.128 0.872 35 H 0.135 0.865 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.113 0.887 40 H 0.083 0.917 41 H 0.059 0.941 42 H 0.079 0.921 43 H 0.385 0.615 44 H 0.256 0.744 45 H 0.063 0.937 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.526 26.537 -4.726 26.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.330 5.330 3 C 0.303 3.697 4 O -0.423 6.423 5 C -0.168 4.168 6 C -0.121 4.121 7 C -0.152 4.152 8 C -0.062 4.062 9 C -0.099 4.099 10 C -0.171 4.171 11 C 0.076 3.924 12 F -0.119 7.119 13 C -0.171 4.171 14 C -0.105 4.105 15 C 0.013 3.987 16 C -0.217 4.217 17 C 0.057 3.943 18 N -0.347 5.347 19 C -0.375 4.375 20 H 0.090 0.910 21 C -0.209 4.209 22 N -0.581 5.581 23 Si 0.739 3.261 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.207 1.207 27 C -0.203 4.203 28 H 0.076 0.924 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.122 0.878 32 H 0.125 0.875 33 H 0.144 0.856 34 H 0.145 0.855 35 H 0.152 0.848 36 H 0.153 0.847 37 H 0.156 0.844 38 H 0.154 0.846 39 H 0.131 0.869 40 H 0.101 0.899 41 H 0.078 0.922 42 H 0.097 0.903 43 H 0.219 0.781 44 H 0.066 0.934 45 H 0.082 0.918 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.144 26.312 -4.819 26.835 hybrid contribution -0.591 -0.903 -0.342 1.132 sum 1.554 25.409 -5.161 25.974 Atomic orbital electron populations 1.21810 0.79626 1.03436 1.02082 1.47877 1.06922 1.05935 1.72284 1.20486 0.87992 0.85126 0.76128 1.90675 1.13977 1.87441 1.50196 1.21208 0.98860 0.91709 1.04985 1.22941 0.98513 0.92949 0.97670 1.21568 0.96813 1.00899 0.95920 1.19171 0.93517 0.99855 0.93687 1.21156 0.98599 0.97796 0.92394 1.21118 0.91177 1.03465 1.01310 1.17825 0.83586 1.02541 0.88493 1.91509 1.54332 1.93976 1.72083 1.21119 1.00656 1.03279 0.92007 1.21285 0.90979 0.98134 1.00142 1.22601 0.97232 0.80340 0.98558 1.24321 1.01031 0.96675 0.99631 1.21339 0.93741 0.87289 0.91960 1.42350 1.18565 1.05223 1.68610 1.19311 1.02103 0.85208 1.30868 0.91006 1.24763 0.96656 0.98296 1.01147 1.69655 1.08293 1.33666 1.46499 0.86181 0.76808 0.84971 0.78179 1.21659 1.21753 1.20696 1.23920 1.01786 0.97304 0.97247 0.92434 0.89925 0.91383 0.87846 0.87543 0.85620 0.85463 0.84756 0.84650 0.84427 0.84550 0.86910 0.89888 0.92197 0.90290 0.78127 0.93445 0.91783 0.90103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.78 8.84 59.85 0.53 1.31 16 2 N -0.60 -7.92 3.08 -173.01 -0.53 -8.45 16 3 C 0.51 6.86 7.67 -10.99 -0.08 6.77 16 4 O -0.55 -9.19 15.51 5.55 0.09 -9.11 16 5 C -0.13 -1.16 3.09 -29.03 -0.09 -1.25 16 6 C -0.10 -0.90 8.69 -36.21 -0.31 -1.22 16 7 C -0.13 -1.04 9.77 -37.58 -0.37 -1.41 16 8 C -0.06 -0.49 5.04 -105.01 -0.53 -1.02 16 9 C -0.08 -0.62 9.78 -39.21 -0.38 -1.00 16 10 C -0.15 -1.20 10.01 -39.57 -0.40 -1.59 16 11 C 0.09 0.84 7.30 -39.33 -0.29 0.55 16 12 F -0.14 -1.40 17.26 2.25 0.04 -1.36 16 13 C -0.15 -1.16 10.01 -39.57 -0.40 -1.56 16 14 C -0.09 -0.63 7.37 -39.21 -0.29 -0.92 16 15 C 0.12 1.78 4.21 -67.12 -0.28 1.50 16 16 C -0.17 -2.96 7.31 -25.92 -0.19 -3.15 16 17 C 0.17 3.28 4.48 -67.12 -0.30 2.98 16 18 N -0.71 -17.29 5.40 -52.64 -0.28 -17.57 16 19 C -0.24 -6.64 9.97 -15.06 -0.15 -6.79 16 20 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 21 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 22 N -0.93 -27.60 13.06 55.49 0.72 -26.88 16 23 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 27 C -0.16 -2.67 7.37 -25.92 -0.19 -2.86 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.97 6.34 -51.93 -0.33 0.64 16 30 H 0.07 0.51 6.44 -51.93 -0.33 0.18 16 31 H 0.10 0.70 7.31 -51.93 -0.38 0.32 16 32 H 0.11 0.91 4.97 -51.93 -0.26 0.65 16 33 H 0.13 1.13 8.05 -52.49 -0.42 0.71 16 34 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 35 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 36 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 38 H 0.14 0.75 6.68 -52.49 -0.35 0.40 16 39 H 0.11 1.84 7.23 -51.93 -0.38 1.46 16 40 H 0.08 1.44 6.72 -51.92 -0.35 1.09 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.08 1.54 8.10 -51.93 -0.42 1.12 16 43 H 0.38 9.86 7.92 -40.82 -0.32 9.53 16 44 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 45 H 0.06 1.03 8.14 -51.92 -0.42 0.60 16 46 H 0.08 1.32 6.90 -51.93 -0.36 0.97 16 LS Contribution 381.05 15.07 5.74 5.74 Total: -1.00 -32.39 381.05 -9.47 -41.86 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -6.41 Total: 8.80 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: -3.82 Total: -10.11 kcal Atomic # 7 Polarization: -52.81 SS G_CDS: -0.09 Total: -52.90 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.09 Total: -9.11 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.36 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.39 -9.47 -41.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284774649.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.775 kcal (2) G-P(sol) polarization free energy of solvation -32.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds