Wall clock time and date at job start Tue Mar 31 2020 16:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34772 * 119.99893 * 2 1 4 4 O 1.21284 * 119.99893 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.00350 * 0.02562 * 3 2 1 6 6 C 1.50702 * 109.47218 * 180.02562 * 5 3 2 7 7 C 1.32576 * 119.99987 * 127.31195 * 6 5 3 8 8 C 1.47799 * 120.00305 * 8.42060 * 7 6 5 9 9 C 1.39547 * 120.11730 * 220.85641 * 8 7 6 10 10 C 1.37926 * 119.88168 * 179.76798 * 9 8 7 11 11 C 1.38581 * 120.11380 * 0.53260 * 10 9 8 12 12 F 1.35096 * 119.88063 * 179.71942 * 11 10 9 13 13 C 1.38569 * 120.23419 * 359.69626 * 11 10 9 14 14 C 1.37928 * 120.11691 * 0.04878 * 13 11 10 15 15 C 1.46496 * 119.99771 * 180.02562 * 2 1 3 16 16 C 1.53786 * 113.61612 * 37.49881 * 15 2 1 17 17 C 1.53782 * 87.08126 * 220.01731 * 16 15 2 18 18 N 1.46497 * 113.69030 * 139.98878 * 17 16 15 19 19 C 1.36936 * 119.99908 * 107.46305 * 18 17 16 20 20 H 1.07997 * 120.00069 * 0.02562 * 19 18 17 21 21 C 1.38808 * 120.00165 * 179.97438 * 19 18 17 22 22 N 1.31626 * 119.99877 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00112 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47254 * 90.00064 * 23 21 19 25 25 H 1.48505 * 109.47052 * 209.99957 * 23 21 19 26 26 H 1.48500 * 109.47237 * 330.00181 * 23 21 19 27 27 C 1.53773 * 113.61578 * 299.99995 * 15 2 1 28 28 H 1.08997 * 109.47406 * 89.99396 * 1 2 3 29 29 H 1.08995 * 109.46856 * 210.00113 * 1 2 3 30 30 H 1.09003 * 109.46734 * 330.00224 * 1 2 3 31 31 H 1.08999 * 109.47088 * 59.99861 * 5 3 2 32 32 H 1.09005 * 109.46928 * 299.99932 * 5 3 2 33 33 H 1.07995 * 120.00054 * 307.30476 * 6 5 3 34 34 H 1.08006 * 119.99524 * 188.15193 * 7 6 5 35 35 H 1.08001 * 120.05590 * 0.02562 * 9 8 7 36 36 H 1.07993 * 119.94210 * 180.23041 * 10 9 8 37 37 H 1.07999 * 119.94097 * 180.02562 * 13 11 10 38 38 H 1.08001 * 120.05690 * 180.02562 * 14 13 11 39 39 H 1.09000 * 112.84611 * 168.79872 * 15 2 1 40 40 H 1.09008 * 113.61091 * 334.56696 * 16 15 2 41 41 H 1.08997 * 113.61526 * 105.46168 * 16 15 2 42 42 H 1.08996 * 113.61006 * 270.88377 * 17 16 15 43 43 H 0.97004 * 120.00113 * 287.46092 * 18 17 16 44 44 H 0.96992 * 119.99867 * 179.97438 * 22 21 19 45 45 H 1.09007 * 113.61508 * 254.52948 * 27 15 2 46 46 H 1.08993 * 113.61837 * 25.43085 * 27 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 0.0006 6 6 2.3648 3.6177 -0.0002 7 6 2.2659 4.5738 -0.9133 8 6 1.0929 4.6196 -1.8113 9 6 1.2570 4.9282 -3.1623 10 6 0.1596 4.9649 -3.9970 11 6 -1.1056 4.7069 -3.4939 12 9 -2.1779 4.7497 -4.3145 13 6 -1.2746 4.4046 -2.1522 14 6 -0.1833 4.3601 -1.3099 15 6 2.1975 -1.2687 -0.0006 16 6 1.5373 -2.3608 -0.8588 17 6 1.9129 -3.3527 0.2548 18 7 0.8728 -4.3460 0.5336 19 6 1.0473 -5.6475 0.1454 20 1 1.9519 -5.9418 -0.3660 21 6 0.0621 -6.5888 0.4101 22 7 -1.0401 -6.2302 1.0338 23 14 0.3005 -8.3644 -0.1188 24 1 0.9672 -9.1205 0.9716 25 1 -1.0212 -8.9762 -0.4091 26 1 1.1451 -8.4082 -1.3395 27 6 1.8953 -2.1550 1.2192 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 0.7591 2.5299 0.8908 32 1 0.7584 2.5302 -0.8892 33 1 3.1471 3.6598 0.7431 34 1 3.0404 5.3218 -0.9980 35 1 2.2421 5.1339 -3.5544 36 1 0.2859 5.2000 -5.0435 37 1 -2.2627 4.2039 -1.7652 38 1 -0.3161 4.1241 -0.2644 39 1 3.2624 -1.1425 -0.1956 40 1 0.4623 -2.2290 -0.9819 41 1 2.0526 -2.5466 -1.8012 42 1 2.9000 -3.7973 0.1287 43 1 0.0605 -4.0817 0.9933 44 1 -1.7287 -6.8879 1.2184 45 1 2.6998 -2.1748 1.9546 46 1 0.9183 -1.9670 1.6643 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284774649.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:02 Heat of formation + Delta-G solvation = -17.651106 kcal Electronic energy + Delta-G solvation = -27357.838334 eV Core-core repulsion = 23355.729370 eV Total energy + Delta-G solvation = -4002.108964 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -49.88612 -41.39186 -40.22888 -39.31933 -36.18325 -35.89826 -34.82903 -32.24472 -31.98926 -30.99930 -28.70034 -27.97082 -26.59501 -26.18723 -24.36547 -23.81726 -23.30729 -20.96509 -20.29341 -19.84549 -19.04199 -18.53534 -18.19427 -17.63447 -17.14742 -16.83965 -16.59860 -16.56259 -16.24929 -16.08165 -15.51188 -15.18215 -14.90464 -14.78320 -14.47587 -14.27801 -14.12473 -14.02249 -13.74376 -13.53737 -13.25968 -13.13965 -13.12349 -12.99853 -12.86864 -12.73643 -12.23704 -12.14656 -12.02138 -11.95897 -11.92379 -11.67870 -11.41108 -10.91067 -10.86263 -10.51488 -10.03871 -9.57250 -9.11998 -8.99129 -7.95198 -5.23214 -0.09486 0.28706 1.28373 1.48425 1.49127 1.57568 1.63446 2.11514 2.56995 2.68314 3.31412 3.36591 3.59752 3.72359 3.78376 3.82040 3.83427 3.94612 3.96212 4.01519 4.20976 4.28323 4.30145 4.30844 4.40080 4.41969 4.54749 4.68440 4.75250 4.83540 4.86066 4.88247 4.97891 4.98853 5.05308 5.10598 5.13525 5.18007 5.20721 5.39795 5.43630 5.52234 5.62102 5.67993 5.77932 5.93856 6.27154 6.48316 7.18692 7.33940 8.08703 8.32957 9.27868 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015369 B = 0.002227 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.421332 B =12571.222419 C =13731.225599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.601 5.601 3 C 0.509 3.491 4 O -0.586 6.586 5 C -0.118 4.118 6 C -0.119 4.119 7 C -0.122 4.122 8 C -0.073 4.073 9 C -0.087 4.087 10 C -0.158 4.158 11 C 0.072 3.928 12 F -0.152 7.152 13 C -0.154 4.154 14 C -0.087 4.087 15 C 0.131 3.869 16 C -0.162 4.162 17 C 0.152 3.848 18 N -0.722 5.722 19 C -0.244 4.244 20 H 0.075 0.925 21 C -0.073 4.073 22 N -0.967 5.967 23 Si 0.970 3.030 24 H -0.288 1.288 25 H -0.295 1.295 26 H -0.271 1.271 27 C -0.148 4.148 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.104 0.896 31 H 0.133 0.867 32 H 0.116 0.884 33 H 0.120 0.880 34 H 0.141 0.859 35 H 0.149 0.851 36 H 0.146 0.854 37 H 0.152 0.848 38 H 0.157 0.843 39 H 0.105 0.895 40 H 0.081 0.919 41 H 0.060 0.940 42 H 0.075 0.925 43 H 0.376 0.624 44 H 0.251 0.749 45 H 0.068 0.932 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.600 27.901 -4.873 28.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.331 5.331 3 C 0.300 3.700 4 O -0.466 6.466 5 C -0.156 4.156 6 C -0.138 4.138 7 C -0.140 4.140 8 C -0.073 4.073 9 C -0.105 4.105 10 C -0.177 4.177 11 C 0.053 3.947 12 F -0.131 7.131 13 C -0.173 4.173 14 C -0.105 4.105 15 C 0.026 3.974 16 C -0.203 4.203 17 C 0.042 3.958 18 N -0.360 5.360 19 C -0.376 4.376 20 H 0.093 0.907 21 C -0.266 4.266 22 N -0.618 5.618 23 Si 0.799 3.201 24 H -0.215 1.215 25 H -0.222 1.222 26 H -0.196 1.196 27 C -0.188 4.188 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.123 0.877 31 H 0.151 0.849 32 H 0.134 0.866 33 H 0.138 0.862 34 H 0.159 0.841 35 H 0.167 0.833 36 H 0.164 0.836 37 H 0.170 0.830 38 H 0.175 0.825 39 H 0.123 0.877 40 H 0.099 0.901 41 H 0.079 0.921 42 H 0.093 0.907 43 H 0.208 0.792 44 H 0.060 0.940 45 H 0.086 0.914 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.240 27.718 -4.986 28.252 hybrid contribution -0.549 -1.228 -0.328 1.384 sum 1.691 26.490 -5.314 27.071 Atomic orbital electron populations 1.22016 0.77791 1.04622 1.02925 1.47930 1.08004 1.05145 1.72059 1.21264 0.87752 0.86207 0.74814 1.90658 1.15942 1.88051 1.51973 1.21225 0.98693 0.89013 1.06708 1.22912 0.98951 0.93483 0.98442 1.21708 0.96762 1.00719 0.94792 1.19346 0.93932 1.00138 0.93911 1.21376 0.99203 0.97478 0.92418 1.21305 0.91015 1.03286 1.02085 1.18145 0.83678 1.03757 0.89125 1.91476 1.54892 1.94214 1.72507 1.21336 1.01638 1.02754 0.91555 1.21516 0.90448 0.97460 1.01034 1.22210 0.96912 0.81330 0.96912 1.24089 1.01039 0.96271 0.98935 1.21626 0.92417 0.87405 0.94401 1.42477 1.19341 1.05297 1.68857 1.19675 1.01799 0.86549 1.29589 0.90695 1.25518 0.96761 1.02090 1.02194 1.69795 1.09107 1.34551 1.48340 0.85190 0.76437 0.80425 0.78012 1.21512 1.22203 1.19594 1.23752 1.02108 0.95719 0.97251 0.91769 0.91273 0.87718 0.84949 0.86606 0.86180 0.84136 0.83299 0.83596 0.82988 0.82525 0.87743 0.90071 0.92145 0.90650 0.79185 0.93987 0.91366 0.89846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.27 8.84 127.77 1.13 2.40 16 2 N -0.60 -14.76 3.08 -819.66 -2.53 -17.29 16 3 C 0.51 12.59 7.67 87.66 0.67 13.26 16 4 O -0.59 -19.21 15.51 -3.04 -0.05 -19.26 16 5 C -0.12 -1.77 3.09 29.10 0.09 -1.68 16 6 C -0.12 -1.83 8.69 24.53 0.21 -1.62 16 7 C -0.12 -1.60 9.77 23.65 0.23 -1.37 16 8 C -0.07 -0.98 5.04 -20.12 -0.10 -1.08 16 9 C -0.09 -1.15 9.78 22.51 0.22 -0.93 16 10 C -0.16 -2.28 10.01 22.28 0.22 -2.06 16 11 C 0.07 1.19 7.30 22.43 0.16 1.35 16 12 F -0.15 -2.95 17.26 44.97 0.78 -2.18 16 13 C -0.15 -2.04 10.01 22.28 0.22 -1.82 16 14 C -0.09 -1.01 7.37 22.51 0.17 -0.84 16 15 C 0.13 3.89 4.21 45.52 0.19 4.08 16 16 C -0.16 -5.37 7.31 31.12 0.23 -5.14 16 17 C 0.15 5.86 4.48 45.52 0.20 6.07 16 18 N -0.72 -35.39 5.40 -320.45 -1.73 -37.12 16 19 C -0.24 -13.34 9.97 84.03 0.84 -12.51 16 20 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 21 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 22 N -0.97 -57.94 13.06 21.65 0.28 -57.66 16 23 Si 0.97 45.62 29.55 68.60 2.03 47.64 16 24 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 25 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 26 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 27 C -0.15 -4.76 7.37 31.12 0.23 -4.53 16 28 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.07 1.51 6.34 -2.39 -0.02 1.49 16 30 H 0.10 1.16 6.44 -2.39 -0.02 1.15 16 31 H 0.13 1.21 7.31 -2.39 -0.02 1.20 16 32 H 0.12 1.57 4.97 -2.38 -0.01 1.56 16 33 H 0.12 1.98 8.05 -2.91 -0.02 1.96 16 34 H 0.14 1.42 8.06 -2.91 -0.02 1.40 16 35 H 0.15 1.43 8.06 -2.91 -0.02 1.40 16 36 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 37 H 0.15 1.48 8.06 -2.91 -0.02 1.45 16 38 H 0.16 1.11 6.68 -2.91 -0.02 1.09 16 39 H 0.10 3.34 7.23 -2.39 -0.02 3.33 16 40 H 0.08 2.75 6.72 -2.38 -0.02 2.73 16 41 H 0.06 1.98 8.14 -2.39 -0.02 1.97 16 42 H 0.08 2.94 8.10 -2.39 -0.02 2.92 16 43 H 0.38 19.51 7.92 -92.71 -0.73 18.78 16 44 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 45 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 46 H 0.08 2.66 6.90 -2.39 -0.02 2.64 16 Total: -1.00 -70.01 381.05 4.44 -65.57 By element: Atomic # 1 Polarization: 30.09 SS G_CDS: 0.27 Total: 30.36 kcal Atomic # 6 Polarization: -15.47 SS G_CDS: 5.39 Total: -10.08 kcal Atomic # 7 Polarization: -108.09 SS G_CDS: -3.98 Total: -112.07 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.05 Total: -19.26 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.78 Total: -2.18 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.64 kcal Total: -70.01 4.44 -65.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284774649.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.918 kcal (2) G-P(sol) polarization free energy of solvation -70.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds