Wall clock time and date at job start Tue Mar 31 2020 17:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00447 * 2 1 4 4 H 1.48498 * 109.47081 * 270.00748 * 3 2 1 5 5 H 1.48501 * 109.46992 * 30.00089 * 3 2 1 6 6 H 1.48493 * 109.47323 * 150.00439 * 3 2 1 7 7 C 1.37888 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99652 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00077 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.46932 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46715 * 180.02562 * 10 9 7 12 12 N 1.46504 * 109.46813 * 179.97438 * 11 10 9 13 13 C 1.34772 * 119.99820 * 180.02562 * 12 11 10 14 14 O 1.21280 * 120.00416 * 0.02562 * 13 12 11 15 15 C 1.50703 * 119.99750 * 180.02562 * 13 12 11 16 16 C 1.53008 * 109.47089 * 180.02562 * 15 13 12 17 17 C 1.52997 * 109.46947 * 179.97438 * 16 15 13 18 18 N 1.46502 * 109.46790 * 179.97438 * 17 16 15 19 19 C 1.36319 * 126.27641 * 265.02213 * 18 17 16 20 20 N 1.30144 * 109.97803 * 180.02562 * 19 18 17 21 21 C 1.35471 * 109.44118 * 359.97438 * 20 19 18 22 22 C 1.37201 * 126.28160 * 85.02248 * 18 17 16 23 23 N 1.32888 * 134.91593 * 359.97438 * 22 18 17 24 24 C 1.31647 * 120.63699 * 180.02562 * 23 22 18 25 25 N 1.32044 * 122.46496 * 359.97438 * 24 23 22 26 26 C 1.32907 * 121.19258 * 0.02562 * 25 24 23 27 27 N 1.38384 * 120.77168 * 179.97438 * 26 25 24 28 28 H 0.97005 * 119.99761 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.46488 * 60.00181 * 9 7 2 30 30 H 1.08994 * 109.47288 * 300.00670 * 9 7 2 31 31 H 1.08993 * 109.46978 * 60.00245 * 10 9 7 32 32 H 1.09000 * 109.47523 * 299.99982 * 10 9 7 33 33 H 1.09001 * 109.46789 * 60.00611 * 11 10 9 34 34 H 1.08988 * 109.47381 * 300.00005 * 11 10 9 35 35 H 0.97000 * 119.99956 * 0.02562 * 12 11 10 36 36 H 1.08992 * 109.47569 * 60.00093 * 15 13 12 37 37 H 1.09000 * 109.47105 * 299.99333 * 15 13 12 38 38 H 1.08997 * 109.47396 * 59.99001 * 16 15 13 39 39 H 1.09000 * 109.46489 * 299.99571 * 16 15 13 40 40 H 1.08992 * 109.47545 * 60.00056 * 17 16 15 41 41 H 1.09000 * 109.47272 * 299.99209 * 17 16 15 42 42 H 1.07997 * 125.01216 * 0.02562 * 19 18 17 43 43 H 1.08007 * 118.76543 * 180.28328 * 24 23 22 44 44 H 0.96996 * 120.00498 * 0.02562 * 27 26 25 45 45 H 0.96999 * 119.99890 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 6 1.4800 -4.9872 -0.0012 12 7 2.4320 -6.1007 -0.0018 13 6 1.9827 -7.3713 -0.0030 14 8 0.7903 -7.5930 -0.0039 15 6 2.9620 -8.5168 -0.0030 16 6 2.1969 -9.8419 -0.0051 17 6 3.1912 -11.0048 -0.0058 18 7 2.4586 -12.2735 -0.0071 19 6 2.1375 -13.0206 1.0869 20 7 1.4860 -14.0865 0.7219 21 6 1.3475 -14.0908 -0.6257 22 6 1.9699 -12.9276 -1.1097 23 7 1.9730 -12.6932 -2.4177 24 6 1.4017 -13.5365 -3.2518 25 7 0.8052 -14.6418 -2.8444 26 6 0.7518 -14.9601 -1.5551 27 7 0.1240 -16.1206 -1.1378 28 1 -0.4850 0.8401 0.0004 29 1 0.6240 -2.5567 -0.8904 30 1 0.6246 -2.5571 0.8896 31 1 2.8717 -3.6044 0.8894 32 1 2.8719 -3.6045 -0.8905 33 1 0.8538 -5.0446 -0.8915 34 1 0.8531 -5.0451 0.8885 35 1 3.3857 -5.9235 -0.0014 36 1 3.5880 -8.4597 0.8874 37 1 3.5892 -8.4586 -0.8926 38 1 1.5711 -9.8987 -0.8956 39 1 1.5694 -9.9004 0.8843 40 1 3.8172 -10.9481 0.8846 41 1 3.8184 -10.9461 -0.8953 42 1 2.3869 -12.7657 2.1063 43 1 1.4261 -13.3184 -4.3093 44 1 -0.2834 -16.7128 -1.7890 45 1 0.0919 -16.3422 -0.1940 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001293155593.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:30 Heat of formation + Delta-G solvation = 39.420141 kcal Electronic energy + Delta-G solvation = -26281.121695 eV Core-core repulsion = 22333.700238 eV Total energy + Delta-G solvation = -3947.421457 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.86727 -39.75455 -39.50214 -36.32849 -35.73112 -35.23114 -33.35871 -32.65656 -32.19293 -31.18223 -29.60326 -28.00332 -26.37796 -24.57106 -24.06280 -23.36542 -22.30018 -21.06846 -20.76902 -19.89739 -18.94433 -18.74609 -17.26983 -16.92700 -16.60593 -16.46347 -16.20956 -16.09915 -15.43118 -15.13708 -14.92342 -14.62988 -14.46818 -14.35288 -14.28050 -13.79923 -13.50480 -12.77687 -12.57356 -12.39900 -12.30342 -12.09292 -11.88468 -11.81099 -11.69432 -11.22085 -10.92727 -10.77155 -10.73827 -10.62350 -10.31859 -9.94954 -9.90487 -9.63451 -9.40309 -9.38856 -9.14452 -8.83425 -8.39790 -8.27929 -6.04293 -4.07652 0.53884 1.04944 1.90550 2.36233 2.71180 2.90970 3.28890 3.30041 3.35565 3.38285 3.62301 3.66074 3.78103 4.03658 4.31076 4.40924 4.43314 4.44395 4.59776 4.70352 4.82518 4.92753 5.05518 5.24204 5.31495 5.35820 5.48104 5.69037 5.69429 5.74079 5.88668 6.07412 6.11950 6.32809 6.43682 6.51252 6.55553 6.74768 6.78474 6.96510 7.22235 7.30305 7.60421 7.64744 7.72676 7.94093 7.99358 8.32118 8.36245 8.98977 9.56677 11.06932 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.030784 B = 0.001482 C = 0.001462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.348396 B =18884.820923 C =19149.066803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.120 4.120 11 C 0.115 3.885 12 N -0.726 5.726 13 C 0.506 3.494 14 O -0.544 6.544 15 C -0.137 4.137 16 C -0.120 4.120 17 C 0.112 3.888 18 N -0.469 5.469 19 C 0.253 3.747 20 N -0.467 5.467 21 C -0.113 4.113 22 C 0.303 3.697 23 N -0.555 5.555 24 C 0.362 3.638 25 N -0.595 5.595 26 C 0.507 3.493 27 N -0.820 5.820 28 H 0.261 0.739 29 H 0.019 0.981 30 H 0.019 0.981 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.399 0.601 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.100 0.900 41 H 0.098 0.902 42 H 0.223 0.777 43 H 0.204 0.796 44 H 0.409 0.591 45 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.170 -32.415 -0.006 33.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.015 4.015 10 C -0.158 4.158 11 C -0.007 4.007 12 N -0.377 5.377 13 C 0.292 3.708 14 O -0.422 6.422 15 C -0.178 4.178 16 C -0.158 4.158 17 C -0.010 4.010 18 N -0.160 5.160 19 C -0.034 4.034 20 N -0.185 5.185 21 C -0.240 4.240 22 C 0.062 3.938 23 N -0.280 5.280 24 C 0.071 3.929 25 N -0.325 5.325 26 C 0.253 3.747 27 N -0.362 5.362 28 H 0.071 0.929 29 H 0.037 0.963 30 H 0.037 0.963 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.232 0.768 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.119 0.881 41 H 0.116 0.884 42 H 0.239 0.761 43 H 0.221 0.779 44 H 0.240 0.760 45 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 6.969 -32.689 -0.358 33.426 hybrid contribution 1.020 1.378 0.495 1.785 sum 7.989 -31.311 0.137 32.314 Atomic orbital electron populations 1.69967 1.06072 1.26714 1.50451 1.25035 0.94859 0.99324 0.95235 0.86573 0.79780 0.83400 0.78111 1.20643 1.21191 1.19901 1.21200 0.92985 0.90939 1.51078 0.92640 1.19035 0.93868 0.90888 0.97670 1.21885 0.99756 0.93349 1.00855 1.21652 0.91916 0.85181 1.01977 1.46228 1.10821 1.05997 1.74665 1.20510 0.89654 0.84164 0.76501 1.90724 1.17037 1.84828 1.49616 1.21549 0.98548 0.92945 1.04741 1.21679 0.97775 0.91275 1.05117 1.22003 0.94079 0.79759 1.05136 1.45175 1.45888 1.20275 1.04701 1.25380 0.97167 0.87693 0.93163 1.70203 1.17999 1.20630 1.09667 1.19683 1.11922 0.99880 0.92489 1.18743 0.95652 0.91003 0.88399 1.67281 1.26188 1.34655 0.99874 1.24471 0.86164 0.82990 0.99287 1.68041 1.28012 1.23148 1.13270 1.17788 0.84913 0.84942 0.87069 1.42203 1.60053 1.21832 1.12143 0.92907 0.96269 0.96285 0.92728 0.92715 0.91798 0.91809 0.76768 0.88578 0.88482 0.90078 0.90366 0.88150 0.88405 0.76106 0.77942 0.76035 0.75063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.68 13.29 55.43 0.74 -25.94 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.52 -14.51 9.11 -34.44 -0.31 -14.82 16 8 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.12 -2.30 5.27 -26.73 -0.14 -2.44 16 11 C 0.12 1.98 5.67 -4.04 -0.02 1.96 16 12 N -0.73 -9.57 5.56 -60.29 -0.33 -9.90 16 13 C 0.51 6.72 7.83 -10.99 -0.09 6.63 16 14 O -0.54 -9.83 15.98 5.56 0.09 -9.74 16 15 C -0.14 -1.05 5.70 -27.88 -0.16 -1.21 16 16 C -0.12 -1.02 4.83 -26.73 -0.13 -1.15 16 17 C 0.11 0.66 6.16 -4.04 -0.02 0.64 16 18 N -0.47 -4.01 2.79 -117.63 -0.33 -4.33 16 19 C 0.25 1.89 12.51 -89.49 -1.12 0.77 16 20 N -0.47 -4.67 11.28 -11.85 -0.13 -4.80 16 21 C -0.11 -1.26 7.17 -84.54 -0.61 -1.86 16 22 C 0.30 3.43 8.05 -155.80 -1.25 2.18 16 23 N -0.56 -6.32 10.47 -13.90 -0.15 -6.46 16 24 C 0.36 3.51 12.25 -92.07 -1.13 2.38 16 25 N -0.59 -6.07 10.45 -13.61 -0.14 -6.21 16 26 C 0.51 5.10 7.87 -154.66 -1.22 3.88 16 27 N -0.82 -5.24 9.05 31.37 0.28 -4.96 16 28 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.06 1.17 8.14 -51.94 -0.42 0.75 16 35 H 0.40 3.99 8.47 -40.82 -0.35 3.64 16 36 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.08 0.95 8.10 -51.93 -0.42 0.53 16 39 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 40 H 0.10 0.26 8.13 -51.93 -0.42 -0.16 16 41 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.22 0.62 8.06 -52.49 -0.42 0.20 16 43 H 0.20 1.21 8.06 -52.48 -0.42 0.79 16 44 H 0.41 1.80 8.95 -40.82 -0.37 1.43 16 45 H 0.42 2.18 8.85 -40.82 -0.36 1.82 16 LS Contribution 388.62 15.07 5.86 5.86 Total: -1.00 -37.86 388.62 -12.10 -49.97 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -6.53 Total: 1.32 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -6.44 Total: -1.08 kcal Atomic # 7 Polarization: -62.55 SS G_CDS: -0.06 Total: -62.61 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.09 Total: -9.74 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -37.86 -12.10 -49.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001293155593.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.388 kcal (2) G-P(sol) polarization free energy of solvation -37.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds