Wall clock time and date at job start Tue Mar 31 2020 17:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00447 * 2 1 4 4 H 1.48498 * 109.47081 * 270.00748 * 3 2 1 5 5 H 1.48501 * 109.46992 * 30.00089 * 3 2 1 6 6 H 1.48493 * 109.47323 * 150.00439 * 3 2 1 7 7 C 1.37888 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99652 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00077 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.46932 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46715 * 180.02562 * 10 9 7 12 12 N 1.46504 * 109.46813 * 179.97438 * 11 10 9 13 13 C 1.34772 * 119.99820 * 180.02562 * 12 11 10 14 14 O 1.21280 * 120.00416 * 0.02562 * 13 12 11 15 15 C 1.50703 * 119.99750 * 180.02562 * 13 12 11 16 16 C 1.53008 * 109.47089 * 180.02562 * 15 13 12 17 17 C 1.52997 * 109.46947 * 179.97438 * 16 15 13 18 18 N 1.46502 * 109.46790 * 179.97438 * 17 16 15 19 19 C 1.36319 * 126.27641 * 265.02213 * 18 17 16 20 20 N 1.30144 * 109.97803 * 180.02562 * 19 18 17 21 21 C 1.35471 * 109.44118 * 359.97438 * 20 19 18 22 22 C 1.37201 * 126.28160 * 85.02248 * 18 17 16 23 23 N 1.32888 * 134.91593 * 359.97438 * 22 18 17 24 24 C 1.31647 * 120.63699 * 180.02562 * 23 22 18 25 25 N 1.32044 * 122.46496 * 359.97438 * 24 23 22 26 26 C 1.32907 * 121.19258 * 0.02562 * 25 24 23 27 27 N 1.38384 * 120.77168 * 179.97438 * 26 25 24 28 28 H 0.97005 * 119.99761 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.46488 * 60.00181 * 9 7 2 30 30 H 1.08994 * 109.47288 * 300.00670 * 9 7 2 31 31 H 1.08993 * 109.46978 * 60.00245 * 10 9 7 32 32 H 1.09000 * 109.47523 * 299.99982 * 10 9 7 33 33 H 1.09001 * 109.46789 * 60.00611 * 11 10 9 34 34 H 1.08988 * 109.47381 * 300.00005 * 11 10 9 35 35 H 0.97000 * 119.99956 * 0.02562 * 12 11 10 36 36 H 1.08992 * 109.47569 * 60.00093 * 15 13 12 37 37 H 1.09000 * 109.47105 * 299.99333 * 15 13 12 38 38 H 1.08997 * 109.47396 * 59.99001 * 16 15 13 39 39 H 1.09000 * 109.46489 * 299.99571 * 16 15 13 40 40 H 1.08992 * 109.47545 * 60.00056 * 17 16 15 41 41 H 1.09000 * 109.47272 * 299.99209 * 17 16 15 42 42 H 1.07997 * 125.01216 * 0.02562 * 19 18 17 43 43 H 1.08007 * 118.76543 * 180.28328 * 24 23 22 44 44 H 0.96996 * 120.00498 * 0.02562 * 27 26 25 45 45 H 0.96999 * 119.99890 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 6 1.4800 -4.9872 -0.0012 12 7 2.4320 -6.1007 -0.0018 13 6 1.9827 -7.3713 -0.0030 14 8 0.7903 -7.5930 -0.0039 15 6 2.9620 -8.5168 -0.0030 16 6 2.1969 -9.8419 -0.0051 17 6 3.1912 -11.0048 -0.0058 18 7 2.4586 -12.2735 -0.0071 19 6 2.1375 -13.0206 1.0869 20 7 1.4860 -14.0865 0.7219 21 6 1.3475 -14.0908 -0.6257 22 6 1.9699 -12.9276 -1.1097 23 7 1.9730 -12.6932 -2.4177 24 6 1.4017 -13.5365 -3.2518 25 7 0.8052 -14.6418 -2.8444 26 6 0.7518 -14.9601 -1.5551 27 7 0.1240 -16.1206 -1.1378 28 1 -0.4850 0.8401 0.0004 29 1 0.6240 -2.5567 -0.8904 30 1 0.6246 -2.5571 0.8896 31 1 2.8717 -3.6044 0.8894 32 1 2.8719 -3.6045 -0.8905 33 1 0.8538 -5.0446 -0.8915 34 1 0.8531 -5.0451 0.8885 35 1 3.3857 -5.9235 -0.0014 36 1 3.5880 -8.4597 0.8874 37 1 3.5892 -8.4586 -0.8926 38 1 1.5711 -9.8987 -0.8956 39 1 1.5694 -9.9004 0.8843 40 1 3.8172 -10.9481 0.8846 41 1 3.8184 -10.9461 -0.8953 42 1 2.3869 -12.7657 2.1063 43 1 1.4261 -13.3184 -4.3093 44 1 -0.2834 -16.7128 -1.7890 45 1 0.0919 -16.3422 -0.1940 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001293155593.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:29 Heat of formation + Delta-G solvation = 13.519706 kcal Electronic energy + Delta-G solvation = -26282.244822 eV Core-core repulsion = 22333.700238 eV Total energy + Delta-G solvation = -3948.544584 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.50523 -40.77951 -40.24860 -37.15687 -36.83454 -36.08241 -35.18653 -33.47813 -33.01042 -32.69504 -30.25557 -29.18728 -27.71341 -25.21107 -25.18895 -24.51006 -23.26600 -22.31615 -21.67782 -21.08819 -19.61256 -19.38446 -18.56000 -18.03169 -17.67768 -17.26108 -17.03463 -16.92464 -16.73621 -16.39098 -16.12343 -15.72692 -15.33874 -15.08137 -15.00230 -14.81052 -14.57362 -14.21499 -13.79860 -13.60482 -13.40838 -13.10608 -12.99390 -12.76208 -12.72291 -12.55382 -12.51398 -12.36972 -11.84828 -11.67878 -11.59721 -11.42385 -11.25061 -10.95937 -10.81370 -10.56170 -10.30316 -10.11878 -10.08344 -8.93344 -8.20034 -6.31887 -0.12251 0.31241 1.33721 1.41917 1.43256 1.54249 1.67825 1.74614 2.26381 2.31854 2.43012 2.89771 3.04567 3.13847 3.18020 3.44259 3.69020 3.81455 3.89587 3.98470 4.14708 4.16595 4.19464 4.28754 4.35234 4.51187 4.54366 4.69612 4.75683 4.85458 4.93539 5.01832 5.09989 5.16456 5.21617 5.43345 5.45827 5.53320 5.69468 5.70643 5.83297 5.96447 6.17589 6.21176 6.62637 6.64747 6.71063 6.85999 7.30603 7.31970 7.38080 8.92035 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.030784 B = 0.001482 C = 0.001462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.348396 B =18884.820923 C =19149.066803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.968 3.032 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.259 1.259 7 C -0.542 4.542 8 H 0.068 0.932 9 C 0.021 3.979 10 C -0.101 4.101 11 C 0.128 3.872 12 N -0.715 5.715 13 C 0.500 3.500 14 O -0.601 6.601 15 C -0.122 4.122 16 C -0.112 4.112 17 C 0.116 3.884 18 N -0.470 5.470 19 C 0.262 3.738 20 N -0.492 5.492 21 C -0.134 4.134 22 C 0.276 3.724 23 N -0.576 5.576 24 C 0.352 3.648 25 N -0.605 5.605 26 C 0.492 3.508 27 N -0.804 5.804 28 H 0.263 0.737 29 H -0.011 1.011 30 H -0.009 1.009 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.042 0.958 34 H 0.046 0.954 35 H 0.419 0.581 36 H 0.141 0.859 37 H 0.125 0.875 38 H 0.038 0.962 39 H 0.064 0.936 40 H 0.148 0.852 41 H 0.101 0.899 42 H 0.268 0.732 43 H 0.231 0.769 44 H 0.418 0.582 45 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.516 -32.714 0.980 34.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.793 3.207 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.182 1.182 7 C -0.579 4.579 8 H 0.087 0.913 9 C -0.017 4.017 10 C -0.138 4.138 11 C 0.004 3.996 12 N -0.367 5.367 13 C 0.288 3.712 14 O -0.482 6.482 15 C -0.162 4.162 16 C -0.151 4.151 17 C -0.005 4.005 18 N -0.161 5.161 19 C -0.024 4.024 20 N -0.211 5.211 21 C -0.261 4.261 22 C 0.034 3.966 23 N -0.301 5.301 24 C 0.061 3.939 25 N -0.336 5.336 26 C 0.237 3.763 27 N -0.347 5.347 28 H 0.071 0.929 29 H 0.008 0.992 30 H 0.009 0.991 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.256 0.744 36 H 0.159 0.841 37 H 0.143 0.857 38 H 0.057 0.943 39 H 0.083 0.917 40 H 0.166 0.834 41 H 0.119 0.881 42 H 0.284 0.716 43 H 0.247 0.753 44 H 0.251 0.749 45 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 10.364 -33.022 0.635 34.616 hybrid contribution -0.089 1.435 0.211 1.453 sum 10.275 -31.586 0.846 33.226 Atomic orbital electron populations 1.70121 1.08017 1.27778 1.51677 1.26049 0.95738 1.03643 0.94748 0.85394 0.78713 0.78174 0.78437 1.19878 1.21122 1.18245 1.21694 0.93817 0.91951 1.50483 0.91347 1.18966 0.94540 0.93233 0.94920 1.21584 0.98340 0.91651 1.02259 1.21181 0.92174 0.86054 1.00217 1.46005 1.11177 1.05106 1.74431 1.21590 0.89919 0.85051 0.74625 1.90711 1.19936 1.85564 1.51965 1.21578 0.97200 0.89258 1.08115 1.21550 0.97988 0.93171 1.02400 1.22172 0.93182 0.77475 1.07633 1.45432 1.45739 1.20848 1.04076 1.26373 0.95112 0.86459 0.94452 1.70191 1.19570 1.22267 1.09076 1.19959 1.12527 1.00378 0.93246 1.19161 0.96496 0.91864 0.89031 1.67318 1.27167 1.35321 1.00303 1.25087 0.85645 0.82737 1.00408 1.68101 1.28567 1.23518 1.13437 1.18072 0.85292 0.85811 0.87159 1.42162 1.58986 1.20839 1.12763 0.92857 0.99236 0.99071 0.91058 0.91288 0.93935 0.93562 0.74393 0.84132 0.85739 0.94330 0.91740 0.83434 0.88063 0.71645 0.75298 0.74932 0.74388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.15 13.29 21.45 0.28 -56.87 16 2 C 0.00 -0.24 5.46 84.66 0.46 0.22 16 3 Si 0.97 43.40 29.54 68.60 2.03 45.43 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 5 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 6 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 7 C -0.54 -29.96 9.11 25.60 0.23 -29.73 16 8 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 9 C 0.02 1.09 4.97 29.85 0.15 1.24 16 10 C -0.10 -3.76 5.27 30.59 0.16 -3.60 16 11 C 0.13 4.43 5.67 86.38 0.49 4.92 16 12 N -0.71 -17.57 5.56 -463.06 -2.57 -20.14 16 13 C 0.50 12.61 7.83 87.66 0.69 13.29 16 14 O -0.60 -22.19 15.98 -3.03 -0.05 -22.24 16 15 C -0.12 -1.44 5.70 29.85 0.17 -1.27 16 16 C -0.11 -1.72 4.83 30.60 0.15 -1.57 16 17 C 0.12 1.01 6.16 86.38 0.53 1.54 16 18 N -0.47 -7.25 2.79 -526.05 -1.47 -8.72 16 19 C 0.26 3.36 12.51 179.95 2.25 5.61 16 20 N -0.49 -9.45 11.28 -191.40 -2.16 -11.61 16 21 C -0.13 -3.01 7.17 39.69 0.28 -2.72 16 22 C 0.28 6.22 8.05 133.86 1.08 7.30 16 23 N -0.58 -13.30 10.47 -197.88 -2.07 -15.37 16 24 C 0.35 6.97 12.25 180.85 2.22 9.18 16 25 N -0.61 -12.61 10.45 -196.97 -2.06 -14.67 16 26 C 0.49 10.06 7.87 133.46 1.05 11.11 16 27 N -0.80 -10.27 9.05 -54.66 -0.49 -10.76 16 28 H 0.26 15.10 8.31 -92.70 -0.77 14.33 16 29 H -0.01 -0.61 8.14 -2.38 -0.02 -0.63 16 30 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 31 H 0.07 2.44 8.14 -2.39 -0.02 2.43 16 32 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.42 6.92 8.47 -92.71 -0.79 6.14 16 36 H 0.14 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.04 0.92 8.10 -2.39 -0.02 0.90 16 39 H 0.06 1.16 8.10 -2.39 -0.02 1.14 16 40 H 0.15 -0.06 8.13 -2.39 -0.02 -0.08 16 41 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.27 0.43 8.06 -2.91 -0.02 0.41 16 43 H 0.23 2.75 8.06 -2.91 -0.02 2.72 16 44 H 0.42 3.60 8.95 -92.71 -0.83 2.77 16 45 H 0.42 4.36 8.85 -92.71 -0.82 3.54 16 Total: -1.00 -88.01 388.62 -0.04 -88.05 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -1.39 Total: 11.38 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: 9.91 Total: 15.53 kcal Atomic # 7 Polarization: -127.61 SS G_CDS: -10.54 Total: -138.15 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -0.05 Total: -22.24 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -88.01 -0.04 -88.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001293155593.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.566 kcal (2) G-P(sol) polarization free energy of solvation -88.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds