Wall clock time and date at job start Tue Mar 31 2020 16:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.36942 * 120.00075 * 2 1 4 4 H 1.08001 * 119.99444 * 322.17700 * 3 2 1 5 5 C 1.38806 * 119.99920 * 142.17192 * 3 2 1 6 6 N 1.31621 * 119.99779 * 157.20539 * 5 3 2 7 7 Si 1.86797 * 120.00292 * 337.21123 * 5 3 2 8 8 H 1.48507 * 109.47040 * 95.81231 * 7 5 3 9 9 H 1.48500 * 109.47148 * 215.80879 * 7 5 3 10 10 H 1.48498 * 109.47231 * 335.81411 * 7 5 3 11 11 C 1.46502 * 120.00195 * 180.02562 * 2 1 3 12 12 C 1.53004 * 109.46996 * 90.00019 * 11 2 1 13 13 H 1.08999 * 110.88833 * 57.43040 * 12 11 2 14 14 C 1.55158 * 111.00159 * 293.54496 * 12 11 2 15 15 C 1.54328 * 102.93990 * 206.42251 * 14 12 11 16 16 N 1.47017 * 107.27001 * 22.19960 * 15 14 12 17 17 C 1.34782 * 125.64769 * 181.01349 * 16 15 14 18 18 O 1.21282 * 119.99868 * 180.02562 * 17 16 15 19 19 C 1.50700 * 119.99784 * 0.02562 * 17 16 15 20 20 H 1.08995 * 112.50818 * 309.67655 * 19 17 16 21 21 C 1.52882 * 113.16325 * 179.77431 * 19 17 16 22 22 C 1.51441 * 84.73675 * 244.77561 * 21 19 17 23 23 C 1.38971 * 145.49692 * 179.97438 * 22 21 19 24 24 C 1.37938 * 120.35484 * 179.97438 * 23 22 21 25 25 C 1.38468 * 120.15269 * 0.02562 * 24 23 22 26 26 F 1.35091 * 120.15238 * 179.97438 * 25 24 23 27 27 C 1.38399 * 119.69403 * 359.97438 * 25 24 23 28 28 C 1.38205 * 120.10305 * 0.02568 * 27 25 24 29 29 C 1.47425 * 108.70382 * 1.05243 * 16 15 14 30 30 H 1.09005 * 109.47705 * 272.88854 * 1 2 3 31 31 H 1.09004 * 109.47383 * 152.88614 * 1 2 3 32 32 H 1.08998 * 109.47423 * 32.88859 * 1 2 3 33 33 H 0.96998 * 120.00304 * 180.02562 * 6 5 3 34 34 H 1.08993 * 109.47320 * 209.99778 * 11 2 1 35 35 H 1.09004 * 109.46667 * 330.00269 * 11 2 1 36 36 H 1.08998 * 110.72223 * 324.78858 * 14 12 11 37 37 H 1.09007 * 110.71746 * 88.06652 * 14 12 11 38 38 H 1.09003 * 109.88076 * 141.61361 * 15 14 12 39 39 H 1.08996 * 109.88394 * 262.62135 * 15 14 12 40 40 H 1.09003 * 113.98912 * 358.71970 * 21 19 17 41 41 H 1.09000 * 113.98855 * 130.83630 * 21 19 17 42 42 H 1.07997 * 119.82231 * 359.96856 * 23 22 21 43 43 H 1.08000 * 119.92313 * 180.02562 * 24 23 22 44 44 H 1.08001 * 119.95195 * 179.97438 * 27 25 24 45 45 H 1.09000 * 110.36634 * 217.03221 * 29 16 15 46 46 H 1.09004 * 110.36159 * 94.71721 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 1.7797 2.0230 -0.5736 5 6 3.3189 1.3122 0.7372 6 7 4.2035 2.2323 0.4157 7 14 3.6372 0.1763 2.1856 8 1 4.4785 -0.9650 1.7440 9 1 4.3421 0.9254 3.2566 10 1 2.3443 -0.3347 2.7074 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7097 -1.4433 13 1 3.0020 -0.9449 -1.9921 14 6 1.1224 -2.0615 -2.1606 15 6 1.5676 -3.0732 -3.2376 16 7 2.8441 -3.6510 -2.7925 17 6 3.5710 -4.5636 -3.4674 18 8 4.6138 -4.9724 -3.0023 19 6 3.0879 -5.0760 -4.7997 20 1 2.0514 -5.4117 -4.7667 21 6 4.0332 -6.0995 -5.4291 22 6 4.2237 -5.0530 -6.5071 23 6 4.8660 -4.7407 -7.6993 24 6 4.6517 -3.5215 -8.3078 25 6 3.7939 -2.5986 -7.7335 26 9 3.5845 -1.4044 -8.3292 27 6 3.1521 -2.9054 -6.5463 28 6 3.3675 -4.1272 -5.9374 29 6 3.1970 -3.0674 -1.4855 30 1 -0.3635 0.0518 1.0264 31 1 -0.3634 -0.9147 -0.4684 32 1 -0.3634 0.8629 -0.5580 33 1 5.0208 2.3204 0.9306 34 1 3.1498 -1.1386 0.5132 35 1 1.6083 -2.0286 0.5129 36 1 0.4196 -2.5217 -1.4661 37 1 0.6865 -1.1748 -2.6212 38 1 0.8199 -3.8599 -3.3388 39 1 1.7012 -2.5640 -4.1920 40 1 4.9288 -6.2967 -4.8398 41 1 3.5376 -7.0066 -5.7748 42 1 5.5365 -5.4563 -8.1516 43 1 5.1542 -3.2862 -9.2344 44 1 2.4825 -2.1885 -6.0945 45 1 4.2737 -2.9120 -1.4177 46 1 2.8546 -3.7133 -0.6769 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317848601.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:47:34 Heat of formation + Delta-G solvation = 16.620050 kcal Electronic energy + Delta-G solvation = -28611.253010 eV Core-core repulsion = 24610.630154 eV Total energy + Delta-G solvation = -4000.622856 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -49.09081 -41.35219 -39.43530 -37.71843 -35.61331 -35.22423 -32.13576 -31.30195 -31.02074 -29.41490 -27.92340 -26.67189 -25.99112 -24.73188 -23.19623 -22.47465 -21.24914 -20.95517 -20.08376 -19.08841 -17.83159 -17.33945 -16.84430 -16.72917 -15.88729 -15.85481 -15.62246 -15.44104 -15.19854 -14.64505 -14.43495 -13.91458 -13.79049 -13.49939 -13.47216 -13.34156 -12.94350 -12.77405 -12.51380 -12.37336 -12.23617 -12.08916 -12.01281 -11.70065 -11.68662 -11.52895 -11.16967 -10.89231 -10.85042 -10.74039 -10.36276 -10.23179 -10.06612 -9.80862 -9.53893 -9.23448 -8.72875 -8.60515 -8.53144 -6.84646 -6.02632 -3.44341 0.78948 0.89607 2.46250 2.92802 3.25920 3.29442 3.45586 3.50040 3.58308 3.94820 4.11453 4.25011 4.40076 4.49913 4.64793 4.78328 4.81343 4.85240 4.98120 5.07346 5.16746 5.28394 5.32207 5.35698 5.43192 5.47357 5.55061 5.62952 5.73553 5.75073 5.82263 5.89847 5.94276 6.00545 6.09173 6.16431 6.22964 6.28725 6.29628 6.39047 6.55237 6.57242 6.66271 6.70135 6.88010 7.52061 8.02385 8.08980 8.35055 8.95397 9.68080 10.08521 11.12953 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014251 B = 0.003172 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.352312 B = 8826.104515 C = 9421.344620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.609 5.609 3 C -0.273 4.273 4 H 0.078 0.922 5 C 0.038 3.962 6 N -0.898 5.898 7 Si 0.875 3.125 8 H -0.284 1.284 9 H -0.300 1.300 10 H -0.270 1.270 11 C 0.151 3.849 12 C -0.113 4.113 13 H 0.092 0.908 14 C -0.117 4.117 15 C 0.098 3.902 16 N -0.609 5.609 17 C 0.540 3.460 18 O -0.537 6.537 19 C -0.059 4.059 20 H 0.120 0.880 21 C -0.057 4.057 22 C -0.127 4.127 23 C -0.072 4.072 24 C -0.146 4.146 25 C 0.101 3.899 26 F -0.134 7.134 27 C -0.115 4.115 28 C -0.096 4.096 29 C 0.106 3.894 30 H 0.007 0.993 31 H 0.033 0.967 32 H 0.039 0.961 33 H 0.264 0.736 34 H 0.056 0.944 35 H 0.041 0.959 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.115 0.885 41 H 0.103 0.897 42 H 0.131 0.869 43 H 0.139 0.861 44 H 0.136 0.864 45 H 0.077 0.923 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.756 -17.324 -15.550 23.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.332 5.332 3 C -0.401 4.401 4 H 0.096 0.904 5 C -0.163 4.163 6 N -0.538 5.538 7 Si 0.705 3.295 8 H -0.212 1.212 9 H -0.228 1.228 10 H -0.194 1.194 11 C 0.024 3.976 12 C -0.135 4.135 13 H 0.110 0.890 14 C -0.155 4.155 15 C -0.025 4.025 16 N -0.342 5.342 17 C 0.328 3.672 18 O -0.414 6.414 19 C -0.080 4.080 20 H 0.138 0.862 21 C -0.093 4.093 22 C -0.127 4.127 23 C -0.090 4.090 24 C -0.165 4.165 25 C 0.082 3.918 26 F -0.113 7.113 27 C -0.134 4.134 28 C -0.097 4.097 29 C -0.016 4.016 30 H 0.025 0.975 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.060 0.940 36 H 0.091 0.909 37 H 0.103 0.897 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.133 0.867 41 H 0.121 0.879 42 H 0.149 0.851 43 H 0.157 0.843 44 H 0.153 0.847 45 H 0.095 0.905 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.045 -17.416 -15.321 23.546 hybrid contribution 0.174 -0.073 0.636 0.663 sum -3.871 -17.489 -14.685 23.162 Atomic orbital electron populations 1.21146 0.84591 0.98756 0.97756 1.43978 1.00709 1.01817 1.86724 1.18768 1.06030 0.90816 1.24508 0.90430 1.25466 0.96811 0.96397 0.97638 1.69876 1.08465 1.36032 1.39459 0.86958 0.78002 0.80172 0.84381 1.21194 1.22834 1.19437 1.21057 0.96601 0.87955 0.91992 1.23081 0.94834 0.94699 1.00895 0.88977 1.22644 0.98229 0.97968 0.96648 1.22178 0.84791 0.96610 0.98922 1.48516 1.23076 1.41073 1.21516 1.19659 0.83659 0.78773 0.85149 1.90701 1.23133 1.58403 1.69194 1.21325 1.02455 0.94000 0.90189 0.86213 1.21756 1.00137 0.95156 0.92291 1.22391 0.97198 0.97810 0.95291 1.20348 0.98810 0.95889 0.93936 1.20989 0.99969 0.93761 1.01744 1.17317 0.99160 0.82223 0.93103 1.91526 1.93727 1.43181 1.82865 1.20132 1.01920 0.96751 0.94608 1.20951 0.98645 0.93703 0.96388 1.22418 1.01081 0.94404 0.83704 0.97530 0.94843 0.94207 0.92652 0.92612 0.94025 0.90922 0.89704 0.91687 0.91623 0.86668 0.87909 0.85147 0.84282 0.84654 0.90476 0.91512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.29 10.35 59.84 0.62 2.91 16 2 N -0.61 -13.76 2.39 -181.12 -0.43 -14.19 16 3 C -0.27 -7.43 9.92 -15.06 -0.15 -7.58 16 4 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 5 C 0.04 1.07 5.29 -17.43 -0.09 0.98 16 6 N -0.90 -27.15 13.97 55.49 0.78 -26.37 16 7 Si 0.87 21.96 25.08 -169.99 -4.26 17.69 16 8 H -0.28 -6.92 6.68 56.52 0.38 -6.54 16 9 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 10 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 11 C 0.15 3.05 4.02 -4.04 -0.02 3.03 16 12 C -0.11 -1.97 3.29 -88.47 -0.29 -2.26 16 13 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 14 C -0.12 -1.58 4.99 -24.89 -0.12 -1.70 16 15 C 0.10 1.13 6.47 -3.06 -0.02 1.11 16 16 N -0.61 -8.64 3.33 -170.52 -0.57 -9.21 16 17 C 0.54 7.76 7.35 -10.98 -0.08 7.68 16 18 O -0.54 -9.55 15.92 5.56 0.09 -9.46 16 19 C -0.06 -0.61 3.35 -96.57 -0.32 -0.93 16 20 H 0.12 0.93 8.11 -51.93 -0.42 0.51 16 21 C -0.06 -0.51 7.91 -27.58 -0.22 -0.73 16 22 C -0.13 -1.30 7.32 -107.55 -0.79 -2.08 16 23 C -0.07 -0.65 10.04 -39.42 -0.40 -1.05 16 24 C -0.15 -1.39 10.01 -39.61 -0.40 -1.79 16 25 C 0.10 1.16 7.31 -39.44 -0.29 0.87 16 26 F -0.13 -1.65 17.27 2.25 0.04 -1.62 16 27 C -0.12 -1.33 9.85 -39.53 -0.39 -1.72 16 28 C -0.10 -1.08 6.94 -104.56 -0.73 -1.80 16 29 C 0.11 1.72 6.37 -2.53 -0.02 1.70 16 30 H 0.01 0.12 8.14 -51.93 -0.42 -0.30 16 31 H 0.03 0.51 6.11 -51.93 -0.32 0.19 16 32 H 0.04 0.73 8.06 -51.93 -0.42 0.31 16 33 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 34 H 0.06 1.28 3.35 -51.93 -0.17 1.10 16 35 H 0.04 0.75 8.04 -51.93 -0.42 0.33 16 36 H 0.07 0.91 7.16 -51.93 -0.37 0.53 16 37 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.72 6.74 -51.93 -0.35 0.37 16 40 H 0.12 1.21 7.02 -51.93 -0.36 0.84 16 41 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 43 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 44 H 0.14 1.46 6.96 -52.49 -0.37 1.10 16 45 H 0.08 1.38 8.04 -51.93 -0.42 0.97 16 46 H 0.07 1.01 8.04 -51.93 -0.42 0.59 16 LS Contribution 370.46 15.07 5.58 5.58 Total: -1.00 -32.68 370.46 -9.05 -41.73 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -6.58 Total: -0.79 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -3.69 Total: -3.37 kcal Atomic # 7 Polarization: -49.54 SS G_CDS: -0.23 Total: -49.77 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.09 Total: -9.46 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.26 Total: 17.69 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.68 -9.05 -41.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317848601.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.352 kcal (2) G-P(sol) polarization free energy of solvation -32.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds