Wall clock time and date at job start Tue Mar 31 2020 16:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.36942 * 120.00075 * 2 1 4 4 H 1.08001 * 119.99444 * 322.17700 * 3 2 1 5 5 C 1.38806 * 119.99920 * 142.17192 * 3 2 1 6 6 N 1.31621 * 119.99779 * 157.20539 * 5 3 2 7 7 Si 1.86797 * 120.00292 * 337.21123 * 5 3 2 8 8 H 1.48507 * 109.47040 * 95.81231 * 7 5 3 9 9 H 1.48500 * 109.47148 * 215.80879 * 7 5 3 10 10 H 1.48498 * 109.47231 * 335.81411 * 7 5 3 11 11 C 1.46502 * 120.00195 * 180.02562 * 2 1 3 12 12 C 1.53004 * 109.46996 * 90.00019 * 11 2 1 13 13 H 1.08999 * 110.88833 * 57.43040 * 12 11 2 14 14 C 1.55158 * 111.00159 * 293.54496 * 12 11 2 15 15 C 1.54328 * 102.93990 * 206.42251 * 14 12 11 16 16 N 1.47017 * 107.27001 * 22.19960 * 15 14 12 17 17 C 1.34782 * 125.64769 * 181.01349 * 16 15 14 18 18 O 1.21282 * 119.99868 * 180.02562 * 17 16 15 19 19 C 1.50700 * 119.99784 * 0.02562 * 17 16 15 20 20 H 1.08995 * 112.50818 * 309.67655 * 19 17 16 21 21 C 1.52882 * 113.16325 * 179.77431 * 19 17 16 22 22 C 1.51441 * 84.73675 * 244.77561 * 21 19 17 23 23 C 1.38971 * 145.49692 * 179.97438 * 22 21 19 24 24 C 1.37938 * 120.35484 * 179.97438 * 23 22 21 25 25 C 1.38468 * 120.15269 * 0.02562 * 24 23 22 26 26 F 1.35091 * 120.15238 * 179.97438 * 25 24 23 27 27 C 1.38399 * 119.69403 * 359.97438 * 25 24 23 28 28 C 1.38205 * 120.10305 * 0.02568 * 27 25 24 29 29 C 1.47425 * 108.70382 * 1.05243 * 16 15 14 30 30 H 1.09005 * 109.47705 * 272.88854 * 1 2 3 31 31 H 1.09004 * 109.47383 * 152.88614 * 1 2 3 32 32 H 1.08998 * 109.47423 * 32.88859 * 1 2 3 33 33 H 0.96998 * 120.00304 * 180.02562 * 6 5 3 34 34 H 1.08993 * 109.47320 * 209.99778 * 11 2 1 35 35 H 1.09004 * 109.46667 * 330.00269 * 11 2 1 36 36 H 1.08998 * 110.72223 * 324.78858 * 14 12 11 37 37 H 1.09007 * 110.71746 * 88.06652 * 14 12 11 38 38 H 1.09003 * 109.88076 * 141.61361 * 15 14 12 39 39 H 1.08996 * 109.88394 * 262.62135 * 15 14 12 40 40 H 1.09003 * 113.98912 * 358.71970 * 21 19 17 41 41 H 1.09000 * 113.98855 * 130.83630 * 21 19 17 42 42 H 1.07997 * 119.82231 * 359.96856 * 23 22 21 43 43 H 1.08000 * 119.92313 * 180.02562 * 24 23 22 44 44 H 1.08001 * 119.95195 * 179.97438 * 27 25 24 45 45 H 1.09000 * 110.36634 * 217.03221 * 29 16 15 46 46 H 1.09004 * 110.36159 * 94.71721 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 1.7797 2.0230 -0.5736 5 6 3.3189 1.3122 0.7372 6 7 4.2035 2.2323 0.4157 7 14 3.6372 0.1763 2.1856 8 1 4.4785 -0.9650 1.7440 9 1 4.3421 0.9254 3.2566 10 1 2.3443 -0.3347 2.7074 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7097 -1.4433 13 1 3.0020 -0.9449 -1.9921 14 6 1.1224 -2.0615 -2.1606 15 6 1.5676 -3.0732 -3.2376 16 7 2.8441 -3.6510 -2.7925 17 6 3.5710 -4.5636 -3.4674 18 8 4.6138 -4.9724 -3.0023 19 6 3.0879 -5.0760 -4.7997 20 1 2.0514 -5.4117 -4.7667 21 6 4.0332 -6.0995 -5.4291 22 6 4.2237 -5.0530 -6.5071 23 6 4.8660 -4.7407 -7.6993 24 6 4.6517 -3.5215 -8.3078 25 6 3.7939 -2.5986 -7.7335 26 9 3.5845 -1.4044 -8.3292 27 6 3.1521 -2.9054 -6.5463 28 6 3.3675 -4.1272 -5.9374 29 6 3.1970 -3.0674 -1.4855 30 1 -0.3635 0.0518 1.0264 31 1 -0.3634 -0.9147 -0.4684 32 1 -0.3634 0.8629 -0.5580 33 1 5.0208 2.3204 0.9306 34 1 3.1498 -1.1386 0.5132 35 1 1.6083 -2.0286 0.5129 36 1 0.4196 -2.5217 -1.4661 37 1 0.6865 -1.1748 -2.6212 38 1 0.8199 -3.8599 -3.3388 39 1 1.7012 -2.5640 -4.1920 40 1 4.9288 -6.2967 -4.8398 41 1 3.5376 -7.0066 -5.7748 42 1 5.5365 -5.4563 -8.1516 43 1 5.1542 -3.2862 -9.2344 44 1 2.4825 -2.1885 -6.0945 45 1 4.2737 -2.9120 -1.4177 46 1 2.8546 -3.7133 -0.6769 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317848601.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:47:32 Heat of formation + Delta-G solvation = -2.236276 kcal Electronic energy + Delta-G solvation = -28612.070681 eV Core-core repulsion = 24610.630154 eV Total energy + Delta-G solvation = -4001.440527 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 3.76 seconds Orbital eigenvalues (eV) -49.97982 -42.22696 -40.50839 -38.98371 -37.22307 -36.05792 -33.97056 -32.79943 -31.89919 -30.57620 -28.85484 -28.13091 -27.45799 -25.88709 -24.26998 -23.33983 -22.94676 -21.84822 -21.48493 -20.10369 -18.85914 -18.68485 -18.13310 -17.69672 -17.37102 -16.87260 -16.85557 -16.58541 -16.23940 -15.98892 -15.36921 -15.29348 -14.94090 -14.81898 -14.67879 -14.50674 -14.36926 -14.10629 -13.78727 -13.62631 -13.42352 -13.31439 -12.97953 -12.87190 -12.76337 -12.67178 -12.50974 -12.42800 -12.40609 -11.94347 -11.82548 -11.67018 -11.58175 -11.30500 -11.10205 -10.63863 -10.03677 -9.73466 -9.52904 -8.74540 -8.22331 -5.59252 -0.00118 0.11712 1.28820 1.38896 1.40789 1.49627 1.87567 2.40135 2.47081 2.76702 2.99990 3.20066 3.32250 3.36971 3.48015 3.53965 3.67393 3.88119 3.91307 4.02336 4.17212 4.25263 4.29662 4.36089 4.44314 4.48029 4.54822 4.61981 4.72170 4.76739 4.80550 4.82875 4.87835 4.92783 4.99977 5.01892 5.07144 5.11998 5.15858 5.18742 5.21405 5.26259 5.43479 5.52362 5.80632 5.93281 6.15938 6.44448 6.98406 7.00298 7.63708 8.04535 8.97661 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014251 B = 0.003172 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.352312 B = 8826.104515 C = 9421.344620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.620 5.620 3 C -0.258 4.258 4 H 0.041 0.959 5 C -0.020 4.020 6 N -0.949 5.949 7 Si 0.939 3.061 8 H -0.277 1.277 9 H -0.310 1.310 10 H -0.254 1.254 11 C 0.146 3.854 12 C -0.109 4.109 13 H 0.048 0.952 14 C -0.108 4.108 15 C 0.100 3.900 16 N -0.611 5.611 17 C 0.534 3.466 18 O -0.580 6.580 19 C -0.051 4.051 20 H 0.155 0.845 21 C -0.048 4.048 22 C -0.132 4.132 23 C -0.072 4.072 24 C -0.143 4.143 25 C 0.077 3.923 26 F -0.146 7.146 27 C -0.129 4.129 28 C -0.114 4.114 29 C 0.111 3.889 30 H 0.011 0.989 31 H 0.075 0.925 32 H 0.035 0.965 33 H 0.261 0.739 34 H 0.026 0.974 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.081 0.919 38 H 0.106 0.894 39 H 0.070 0.930 40 H 0.099 0.901 41 H 0.140 0.860 42 H 0.160 0.840 43 H 0.161 0.839 44 H 0.134 0.866 45 H 0.046 0.954 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.802 -20.950 -16.327 27.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.344 5.344 3 C -0.388 4.388 4 H 0.059 0.941 5 C -0.216 4.216 6 N -0.594 5.594 7 Si 0.768 3.232 8 H -0.205 1.205 9 H -0.239 1.239 10 H -0.178 1.178 11 C 0.021 3.979 12 C -0.131 4.131 13 H 0.067 0.933 14 C -0.146 4.146 15 C -0.021 4.021 16 N -0.343 5.343 17 C 0.323 3.677 18 O -0.460 6.460 19 C -0.071 4.071 20 H 0.173 0.827 21 C -0.085 4.085 22 C -0.132 4.132 23 C -0.090 4.090 24 C -0.161 4.161 25 C 0.057 3.943 26 F -0.125 7.125 27 C -0.148 4.148 28 C -0.115 4.115 29 C -0.012 4.012 30 H 0.029 0.971 31 H 0.093 0.907 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.044 0.956 35 H 0.094 0.906 36 H 0.115 0.885 37 H 0.099 0.901 38 H 0.124 0.876 39 H 0.088 0.912 40 H 0.117 0.883 41 H 0.158 0.842 42 H 0.178 0.822 43 H 0.179 0.821 44 H 0.151 0.849 45 H 0.064 0.936 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.151 -21.071 -16.114 27.230 hybrid contribution 0.785 1.092 0.780 1.555 sum -5.367 -19.978 -15.333 25.750 Atomic orbital electron populations 1.21284 0.81870 1.00784 0.98373 1.44100 1.02421 1.01031 1.86894 1.18685 1.05767 0.91708 1.22641 0.94148 1.26070 0.96983 0.98393 1.00185 1.70009 1.09342 1.39019 1.40995 0.85915 0.78400 0.78309 0.80594 1.20463 1.23893 1.17757 1.21121 0.95513 0.87615 0.93664 1.22766 0.97185 0.94126 0.99041 0.93341 1.22614 0.96180 0.98600 0.97161 1.22327 0.84347 0.97302 0.98169 1.48607 1.24010 1.40923 1.20799 1.20415 0.82967 0.78147 0.86148 1.90681 1.24950 1.59888 1.70475 1.21418 1.04575 0.93927 0.87186 0.82723 1.21819 0.99476 0.96026 0.91130 1.22715 0.96721 0.98022 0.95733 1.20697 0.98640 0.96095 0.93545 1.21300 0.99081 0.93431 1.02337 1.17614 1.00457 0.82454 0.93727 1.91491 1.93957 1.43945 1.83080 1.20234 1.02387 0.97193 0.94995 1.21085 0.99538 0.93834 0.97023 1.22210 0.99132 0.94184 0.85704 0.97108 0.90664 0.94657 0.92979 0.95614 0.90588 0.88537 0.90061 0.87590 0.91192 0.88298 0.84182 0.82236 0.82134 0.84862 0.93562 0.89781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.21 10.35 127.77 1.32 5.53 16 2 N -0.62 -27.48 2.39 -726.94 -1.74 -29.22 16 3 C -0.26 -14.42 9.92 84.03 0.83 -13.59 16 4 H 0.04 2.52 8.06 -2.91 -0.02 2.49 16 5 C -0.02 -1.16 5.29 84.86 0.45 -0.71 16 6 N -0.95 -60.09 13.97 21.65 0.30 -59.79 16 7 Si 0.94 46.35 25.08 68.60 1.72 48.07 16 8 H -0.28 -13.22 6.68 99.48 0.66 -12.55 16 9 H -0.31 -15.64 7.11 99.48 0.71 -14.93 16 10 H -0.25 -11.72 7.11 99.48 0.71 -11.01 16 11 C 0.15 5.71 4.02 86.38 0.35 6.06 16 12 C -0.11 -3.73 3.29 -9.40 -0.03 -3.76 16 13 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 14 C -0.11 -2.58 4.99 31.78 0.16 -2.42 16 15 C 0.10 1.99 6.47 86.73 0.56 2.55 16 16 N -0.61 -16.25 3.33 -811.80 -2.70 -18.95 16 17 C 0.53 14.52 7.35 87.66 0.64 15.17 16 18 O -0.58 -20.47 15.92 -3.03 -0.05 -20.52 16 19 C -0.05 -0.91 3.35 -14.65 -0.05 -0.95 16 20 H 0.16 1.65 8.11 -2.39 -0.02 1.63 16 21 C -0.05 -0.72 7.91 30.04 0.24 -0.49 16 22 C -0.13 -2.38 7.32 -21.76 -0.16 -2.54 16 23 C -0.07 -1.13 10.04 22.37 0.22 -0.91 16 24 C -0.14 -2.50 10.01 22.25 0.22 -2.28 16 25 C 0.08 1.72 7.31 22.36 0.16 1.88 16 26 F -0.15 -3.63 17.27 44.97 0.78 -2.86 16 27 C -0.13 -2.91 9.85 22.30 0.22 -2.69 16 28 C -0.11 -2.35 6.94 -19.82 -0.14 -2.48 16 29 C 0.11 3.50 6.37 86.85 0.55 4.06 16 30 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 31 H 0.07 1.98 6.11 -2.38 -0.01 1.96 16 32 H 0.03 1.25 8.06 -2.39 -0.02 1.23 16 33 H 0.26 15.78 8.31 -92.71 -0.77 15.00 16 34 H 0.03 1.17 3.35 -2.39 -0.01 1.16 16 35 H 0.08 2.45 8.04 -2.38 -0.02 2.43 16 36 H 0.10 1.90 7.16 -2.39 -0.02 1.88 16 37 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 38 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.07 1.37 6.74 -2.39 -0.02 1.35 16 40 H 0.10 1.91 7.02 -2.39 -0.02 1.89 16 41 H 0.14 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 43 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 44 H 0.13 2.88 6.96 -2.91 -0.02 2.86 16 45 H 0.05 1.72 8.04 -2.39 -0.02 1.70 16 46 H 0.08 2.36 8.04 -2.38 -0.02 2.34 16 Total: -1.00 -76.00 370.46 4.83 -71.17 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: 0.95 Total: 9.68 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: 5.56 Total: 2.42 kcal Atomic # 7 Polarization: -103.83 SS G_CDS: -4.14 Total: -107.96 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: -0.05 Total: -20.52 kcal Atomic # 9 Polarization: -3.63 SS G_CDS: 0.78 Total: -2.86 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 1.72 Total: 48.07 kcal Total: -76.00 4.83 -71.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317848601.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.933 kcal (2) G-P(sol) polarization free energy of solvation -75.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.76 seconds