Wall clock time and date at job start Tue Mar 31 2020 16:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36942 * 119.99705 * 2 1 4 4 H 1.07997 * 119.99662 * 202.83802 * 3 2 1 5 5 C 1.38812 * 119.99871 * 22.85168 * 3 2 1 6 6 N 1.31614 * 120.00517 * 13.22853 * 5 3 2 7 7 Si 1.86799 * 119.99664 * 193.24016 * 5 3 2 8 8 H 1.48500 * 109.47487 * 359.97438 * 7 5 3 9 9 H 1.48494 * 109.47327 * 119.99638 * 7 5 3 10 10 H 1.48499 * 109.46962 * 239.99591 * 7 5 3 11 11 C 1.46497 * 120.00268 * 179.97438 * 2 1 3 12 12 C 1.53000 * 109.47089 * 90.00105 * 11 2 1 13 13 H 1.08998 * 110.88814 * 308.88480 * 12 11 2 14 14 C 1.55163 * 111.03643 * 72.78242 * 12 11 2 15 15 C 1.54337 * 103.01780 * 153.39572 * 14 12 11 16 16 N 1.47018 * 107.26811 * 338.14349 * 15 14 12 17 17 C 1.34780 * 125.65128 * 178.84454 * 16 15 14 18 18 O 1.21271 * 120.00429 * 179.69268 * 17 16 15 19 19 C 1.50703 * 119.99577 * 359.69738 * 17 16 15 20 20 H 1.08998 * 112.54981 * 50.35915 * 19 17 16 21 21 C 1.52878 * 113.16361 * 180.22384 * 19 17 16 22 22 C 1.51445 * 84.73713 * 115.22601 * 21 19 17 23 23 C 1.38968 * 145.49410 * 180.02562 * 22 21 19 24 24 C 1.37933 * 120.34884 * 179.97438 * 23 22 21 25 25 C 1.38460 * 120.15751 * 359.97397 * 24 23 22 26 26 F 1.35102 * 120.15608 * 179.97438 * 25 24 23 27 27 C 1.38402 * 119.69297 * 0.21308 * 25 24 23 28 28 C 1.38205 * 120.10146 * 359.59701 * 27 25 24 29 29 C 1.47423 * 108.70204 * 358.58566 * 16 15 14 30 30 H 1.08999 * 109.47080 * 275.12266 * 1 2 3 31 31 H 1.08999 * 109.47345 * 35.12517 * 1 2 3 32 32 H 1.09001 * 109.47231 * 155.12577 * 1 2 3 33 33 H 0.97001 * 120.00285 * 179.97438 * 6 5 3 34 34 H 1.09000 * 109.46885 * 330.00346 * 11 2 1 35 35 H 1.08998 * 109.47128 * 210.00278 * 11 2 1 36 36 H 1.08995 * 110.72495 * 271.95226 * 14 12 11 37 37 H 1.09001 * 110.71561 * 35.05399 * 14 12 11 38 38 H 1.09000 * 109.99080 * 218.66344 * 15 14 12 39 39 H 1.08999 * 109.77765 * 97.50223 * 15 14 12 40 40 H 1.09006 * 113.99177 * 229.16615 * 21 19 17 41 41 H 1.08997 * 113.99294 * 1.27795 * 21 19 17 42 42 H 1.07991 * 119.82348 * 359.95622 * 23 22 21 43 43 H 1.08002 * 119.92235 * 179.97438 * 24 23 22 44 44 H 1.08000 * 119.94606 * 179.65054 * 27 25 24 45 45 H 1.09005 * 110.36439 * 143.19390 * 29 16 15 46 46 H 1.08995 * 110.36817 * 265.51304 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1661 1.2226 -0.3630 5 6 1.5372 2.3409 0.4669 6 7 0.4114 2.2613 1.1440 7 14 2.3108 4.0082 0.1337 8 1 3.5641 3.8265 -0.6418 9 1 1.3639 4.8467 -0.6444 10 1 2.6197 4.6770 1.4231 11 6 2.1975 -1.2687 0.0006 12 6 2.4526 -1.7110 -1.4417 13 1 1.5295 -1.6978 -2.0212 14 6 3.5413 -0.8303 -2.1101 15 6 4.1384 -1.7683 -3.1805 16 7 3.8370 -3.1473 -2.7694 17 6 4.1704 -4.2610 -3.4514 18 8 3.8740 -5.3521 -3.0130 19 6 4.9116 -4.1502 -4.7589 20 1 5.7910 -3.5102 -4.6879 21 6 5.2049 -5.5064 -5.4007 22 6 4.2815 -5.0285 -6.5018 23 6 3.6904 -5.3457 -7.7188 24 6 2.8489 -4.4467 -8.3402 25 6 2.5864 -3.2200 -7.7541 26 9 1.7625 -2.3393 -8.3630 27 6 3.1759 -2.8983 -6.5440 28 6 4.0159 -3.8013 -5.9203 29 6 3.1152 -3.1105 -1.4845 30 1 -0.3633 0.0918 1.0236 31 1 -0.3634 0.8405 -0.5913 32 1 -0.3634 -0.9323 -0.4323 33 1 -0.0163 3.0683 1.4705 34 1 1.6084 -2.0281 0.5147 35 1 3.1499 -1.1381 0.5144 36 1 3.0951 0.0506 -2.5716 37 1 4.3018 -0.5407 -1.3849 38 1 5.2175 -1.6266 -3.2400 39 1 3.6815 -1.5617 -4.1483 40 1 6.2409 -5.6331 -5.7151 41 1 4.8198 -6.3560 -4.8369 42 1 3.8913 -6.3010 -8.1807 43 1 2.3935 -4.7002 -9.2862 44 1 2.9785 -1.9403 -6.0859 45 1 2.3550 -3.8912 -1.4540 46 1 3.8121 -3.2258 -0.6544 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317848606.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:47:59 Heat of formation + Delta-G solvation = 11.574610 kcal Electronic energy + Delta-G solvation = -28317.918489 eV Core-core repulsion = 24317.076847 eV Total energy + Delta-G solvation = -4000.841642 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 2.95 seconds Orbital eigenvalues (eV) -49.13022 -41.37473 -39.42080 -37.63796 -35.41282 -35.24154 -32.32867 -31.20188 -30.53301 -29.17439 -27.88424 -26.36729 -25.79894 -24.76841 -23.20130 -22.47209 -21.39746 -20.96899 -19.70869 -19.03523 -17.83959 -17.27915 -16.93119 -16.73810 -15.91058 -15.83063 -15.62760 -15.47362 -14.95499 -14.54030 -14.22659 -13.94863 -13.62916 -13.51312 -13.37787 -13.20805 -12.98438 -12.78871 -12.46553 -12.18923 -12.12003 -12.06373 -11.85179 -11.70650 -11.36258 -11.10233 -10.91453 -10.85319 -10.69684 -10.43082 -10.34097 -10.18665 -10.02885 -9.84796 -9.80260 -9.26783 -8.76340 -8.62254 -8.54419 -6.75041 -5.73242 -3.20067 0.75573 0.86158 2.44098 2.92552 3.22836 3.35520 3.42460 3.44383 3.55715 3.91953 4.09202 4.22058 4.39896 4.48005 4.61651 4.84755 4.87593 4.95413 4.99182 5.13195 5.20919 5.29591 5.38469 5.41018 5.46230 5.54423 5.59781 5.70702 5.73340 5.79679 5.85593 5.86410 5.94182 6.10725 6.20136 6.26699 6.30225 6.48513 6.51502 6.53963 6.65217 6.75950 6.90561 7.36868 7.51206 7.72762 7.79873 8.06838 8.38614 9.22500 9.86539 10.35904 11.31563 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014476 B = 0.002866 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.750233 B = 9766.032737 C =10724.609627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.600 5.600 3 C -0.252 4.252 4 H 0.071 0.929 5 C 0.001 3.999 6 N -0.907 5.907 7 Si 0.901 3.099 8 H -0.278 1.278 9 H -0.290 1.290 10 H -0.291 1.291 11 C 0.162 3.838 12 C -0.116 4.116 13 H 0.076 0.924 14 C -0.113 4.113 15 C 0.095 3.905 16 N -0.609 5.609 17 C 0.541 3.459 18 O -0.540 6.540 19 C -0.060 4.060 20 H 0.121 0.879 21 C -0.056 4.056 22 C -0.127 4.127 23 C -0.072 4.072 24 C -0.146 4.146 25 C 0.100 3.900 26 F -0.135 7.135 27 C -0.116 4.116 28 C -0.095 4.095 29 C 0.109 3.891 30 H 0.031 0.969 31 H 0.040 0.960 32 H -0.003 1.003 33 H 0.251 0.749 34 H 0.039 0.961 35 H 0.050 0.950 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.103 0.897 41 H 0.115 0.885 42 H 0.131 0.869 43 H 0.139 0.861 44 H 0.136 0.864 45 H 0.073 0.927 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.504 -13.994 -16.718 23.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.322 5.322 3 C -0.382 4.382 4 H 0.088 0.912 5 C -0.198 4.198 6 N -0.552 5.552 7 Si 0.731 3.269 8 H -0.203 1.203 9 H -0.217 1.217 10 H -0.218 1.218 11 C 0.034 3.966 12 C -0.138 4.138 13 H 0.095 0.905 14 C -0.150 4.150 15 C -0.027 4.027 16 N -0.342 5.342 17 C 0.328 3.672 18 O -0.418 6.418 19 C -0.081 4.081 20 H 0.138 0.862 21 C -0.093 4.093 22 C -0.127 4.127 23 C -0.090 4.090 24 C -0.165 4.165 25 C 0.081 3.919 26 F -0.113 7.113 27 C -0.135 4.135 28 C -0.096 4.096 29 C -0.013 4.013 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.016 0.984 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.069 0.931 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.121 0.879 41 H 0.133 0.867 42 H 0.149 0.851 43 H 0.157 0.843 44 H 0.154 0.846 45 H 0.092 0.908 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.199 -14.442 -16.467 23.756 hybrid contribution 0.071 1.458 -0.400 1.514 sum 9.270 -12.983 -16.867 23.216 Atomic orbital electron populations 1.20791 0.82703 0.95335 0.99463 1.43869 1.01763 1.00585 1.85994 1.19225 0.98134 0.85423 1.35411 0.91171 1.25031 0.97918 0.98502 0.98320 1.70078 1.19512 1.26994 1.38590 0.86244 0.78526 0.84605 0.77517 1.20313 1.21696 1.21811 1.20618 0.96394 0.88640 0.90941 1.23191 0.97564 0.91381 1.01712 0.90544 1.22589 0.98189 0.97528 0.96733 1.22259 0.99950 0.81211 0.99330 1.48543 1.56387 1.06026 1.23217 1.19633 0.79577 0.83237 0.84720 1.90687 1.55262 1.26328 1.69485 1.21334 0.97469 0.99024 0.90251 0.86153 1.21758 0.98950 0.96888 0.91734 1.22405 0.98715 0.96442 0.95125 1.20348 0.95593 0.99314 0.93736 1.20983 1.01003 0.92914 1.01605 1.17321 0.93329 0.88556 0.92672 1.91528 1.69644 1.67792 1.82383 1.20143 0.98096 1.00923 0.94313 1.20958 0.97144 0.95148 0.96332 1.22388 0.95497 0.99026 0.84435 0.95098 0.94160 0.98438 0.93841 0.94290 0.93133 0.89391 0.90576 0.91661 0.91835 0.87890 0.86670 0.85140 0.84304 0.84641 0.90847 0.91310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.90 8.98 59.85 0.54 4.44 16 2 N -0.60 -14.30 2.91 -181.12 -0.53 -14.83 16 3 C -0.25 -6.53 9.16 -15.06 -0.14 -6.67 16 4 H 0.07 1.74 7.09 -52.49 -0.37 1.37 16 5 C 0.00 0.01 5.10 -17.43 -0.09 -0.07 16 6 N -0.91 -26.03 10.71 55.49 0.59 -25.43 16 7 Si 0.90 21.23 29.57 -169.99 -5.03 16.20 16 8 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 9 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 C 0.16 3.10 5.17 -4.04 -0.02 3.08 16 12 C -0.12 -1.87 3.26 -88.47 -0.29 -2.16 16 13 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 14 C -0.11 -1.66 5.29 -24.89 -0.13 -1.79 16 15 C 0.10 1.14 6.47 -3.06 -0.02 1.12 16 16 N -0.61 -8.26 3.33 -170.52 -0.57 -8.83 16 17 C 0.54 7.40 7.35 -10.98 -0.08 7.32 16 18 O -0.54 -9.05 15.92 5.56 0.09 -8.97 16 19 C -0.06 -0.61 3.35 -96.57 -0.32 -0.93 16 20 H 0.12 0.95 8.11 -51.93 -0.42 0.52 16 21 C -0.06 -0.49 7.91 -27.58 -0.22 -0.71 16 22 C -0.13 -1.24 7.32 -107.55 -0.79 -2.03 16 23 C -0.07 -0.62 10.04 -39.42 -0.40 -1.01 16 24 C -0.15 -1.32 10.01 -39.61 -0.40 -1.72 16 25 C 0.10 1.10 7.31 -39.44 -0.29 0.81 16 26 F -0.13 -1.59 17.27 2.25 0.04 -1.55 16 27 C -0.12 -1.29 9.85 -39.53 -0.39 -1.68 16 28 C -0.10 -1.03 6.94 -104.56 -0.73 -1.75 16 29 C 0.11 1.58 6.37 -2.53 -0.02 1.57 16 30 H 0.03 0.81 7.34 -51.93 -0.38 0.43 16 31 H 0.04 1.04 7.34 -51.93 -0.38 0.66 16 32 H 0.00 -0.06 8.03 -51.93 -0.42 -0.48 16 33 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 34 H 0.04 0.72 8.07 -51.93 -0.42 0.30 16 35 H 0.05 0.96 7.87 -51.93 -0.41 0.55 16 36 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 37 H 0.08 1.15 7.75 -51.93 -0.40 0.74 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.71 6.76 -51.93 -0.35 0.36 16 40 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.12 1.14 7.02 -51.93 -0.36 0.78 16 42 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 43 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 44 H 0.14 1.43 6.98 -52.49 -0.37 1.06 16 45 H 0.07 1.12 8.04 -51.93 -0.42 0.70 16 46 H 0.07 0.96 8.04 -51.93 -0.42 0.55 16 LS Contribution 376.34 15.07 5.67 5.67 Total: -1.00 -31.19 376.34 -10.29 -41.48 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -6.79 Total: -1.57 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -3.77 Total: -2.18 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: -0.50 Total: -49.09 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.09 Total: -8.97 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.20 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.19 -10.29 -41.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317848606.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.052 kcal (2) G-P(sol) polarization free energy of solvation -31.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.95 seconds